ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal25o09 |
|---|---|
| Clone Library Name | barley_pub |
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 206 bits (524), Expect = 3e-53 Identities = 102/111 (91%), Positives = 106/111 (95%), Gaps = 2/111 (1%) Frame = -1 Query: 500 GPSEFSVAVTIFGGRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVS 321 GPSEFSVAVTIFGGRGHAATWGKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVS Sbjct: 285 GPSEFSVAVTIFGGRGHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVS 344 Query: 320 AGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 174 AGSPRSVFHCF ENVESGHPLVKEGKLANLLAWRAEE+SLEE GA+LCE Sbjct: 345 AGSPRSVFHCF--ENVESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 149 bits (375), Expect = 5e-36 Identities = 73/103 (70%), Positives = 84/103 (81%) Frame = -1 Query: 500 GPSEFSVAVTIFGGRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVS 321 GPSEFSVAVTIFGG GHA TW K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ Sbjct: 292 GPSEFSVAVTIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVA 351 Query: 320 AGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEE 192 GSP+SV HCFE EN+ + P VKEGKL NLL W ED+LEE Sbjct: 352 VGSPKSVLHCFEAENMVNPAP-VKEGKLGNLLPW--GEDALEE 391
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 148 bits (374), Expect = 7e-36 Identities = 74/106 (69%), Positives = 84/106 (79%), Gaps = 1/106 (0%) Frame = -1 Query: 500 GPSEFSVAVTIFGGRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVS 321 GPSEFSVAVTIFGGRGHA TWGK L AE YDCNN+VEQELP GG+L+YQSF A E+ Sbjct: 292 GPSEFSVAVTIFGGRGHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV-- 349 Query: 320 AGSPRSVFHCFEGENVESG-HPLVKEGKLANLLAWRAEEDSLEEGA 186 A SP+SVFHCF+GENVES P+ K+ KLANLL W E D++EE A Sbjct: 350 ATSPKSVFHCFDGENVESAPPPMKKDYKLANLLCWEEEADAMEEKA 395
>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 42.4 bits (98), Expect = 7e-04 Identities = 27/76 (35%), Positives = 37/76 (48%) Frame = -1 Query: 497 PSEFSVAVTIFGGRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSA 318 P+EFSVAV + + G LD + Y C+ Q L G ++YQ F A Sbjct: 282 PTEFSVAVHV-DNASKSFEQGCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDC 336 Query: 317 GSPRSVFHCFEGENVE 270 GSPRS C++ E+ E Sbjct: 337 GSPRSTLKCWKDEDEE 352
>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 40.0 bits (92), Expect = 0.004 Identities = 26/76 (34%), Positives = 35/76 (46%) Frame = -1 Query: 497 PSEFSVAVTIFGGRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSA 318 P+EFSVAV + + G LD + Y C Q L G ++YQ F Sbjct: 282 PTEFSVAVHV-DNASKSFEQGCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YC 336 Query: 317 GSPRSVFHCFEGENVE 270 GSPRS C++ E+ E Sbjct: 337 GSPRSTLKCWKDEDEE 352
>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 37.7 bits (86), Expect = 0.017 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 6/80 (7%) Frame = -1 Query: 497 PSEFSVAVTIFGGRGHAATWGKKLDA------EAYDCNNIVEQELPCGGVLIYQSFTANE 336 P+EFSVA+ H + G+KLD+ + Y C + L GG ++Y FT+ Sbjct: 284 PAEFSVAL-------HCDSIGEKLDSVFELDVKGYACGERSYEALGKGGSIMYCGFTSTG 336 Query: 335 EVAVSAGSPRSVFHCFEGEN 276 S GSPRS C EN Sbjct: 337 ----SCGSPRSTLLCCWSEN 352
>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 37.4 bits (85), Expect = 0.023 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 6/80 (7%) Frame = -1 Query: 497 PSEFSVAVTIFGGRGHAATWGKKLDA------EAYDCNNIVEQELPCGGVLIYQSFTANE 336 P+EFSVA+ H + G+KLD+ + Y C + L GG ++Y FT+ Sbjct: 284 PAEFSVAL-------HCDSIGEKLDSVFKLDVKGYACGERSYEGLNKGGSIMYCGFTSTG 336 Query: 335 EVAVSAGSPRSVFHCFEGEN 276 S GSPRS C EN Sbjct: 337 ----SCGSPRSTLLCCWSEN 352
>RPIA_BORPE (Q7VWC1) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 226 Score = 31.2 bits (69), Expect = 1.6 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 11/81 (13%) Frame = +3 Query: 279 LALEAVEDGPGRPGG-----------DSNLFIRGKALVDEDAPAGELLLHDVVAVVCLGV 425 +A AV G R GG + N+ + L DAP E ++D+ VV G+ Sbjct: 143 MARNAVARGLSRLGGQPALREGFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGL 202 Query: 426 ELLAPGGGVAAATEDGDRHRE 488 LA AT+DG R E Sbjct: 203 FALAGADVALLATQDGIRRLE 223
>RPIA_BORPA (Q7W9Q5) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 226 Score = 31.2 bits (69), Expect = 1.6 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 11/81 (13%) Frame = +3 Query: 279 LALEAVEDGPGRPGG-----------DSNLFIRGKALVDEDAPAGELLLHDVVAVVCLGV 425 +A AV G R GG + N+ + L DAP E ++D+ VV G+ Sbjct: 143 MARNAVARGLSRLGGQPALREGFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGL 202 Query: 426 ELLAPGGGVAAATEDGDRHRE 488 LA AT+DG R E Sbjct: 203 FALAGADVALLATQDGIRRLE 223
>RPIA_BORBR (Q7WH03) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 226 Score = 31.2 bits (69), Expect = 1.6 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 11/81 (13%) Frame = +3 Query: 279 LALEAVEDGPGRPGG-----------DSNLFIRGKALVDEDAPAGELLLHDVVAVVCLGV 425 +A AV G R GG + N+ + L DAP E ++D+ VV G+ Sbjct: 143 MARNAVARGLSRLGGQPALREGFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGL 202 Query: 426 ELLAPGGGVAAATEDGDRHRE 488 LA AT+DG R E Sbjct: 203 FALAGADVALLATQDGIRRLE 223
>PKN1_CHLCV (Q822R1) Serine/threonine-protein kinase pkn1 (EC 2.7.11.1)| Length = 618 Score = 30.4 bits (67), Expect = 2.8 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Frame = -1 Query: 482 VAVTIFGGRGHAATWGKKLDAEA----YDCNNIVEQELPCG 372 V VT +G G+A+ GK+L EA C + + PCG Sbjct: 471 VGVTWYGASGYASWVGKRLPTEAEWEIASCGGVTQLRYPCG 511
>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog| Length = 713 Score = 28.9 bits (63), Expect = 8.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -1 Query: 323 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 183 +AGSP S G P+ + N+ +W A +DS+ EGAV Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297
>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)| (BSU1-like protein 3) Length = 715 Score = 28.9 bits (63), Expect = 8.1 Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Frame = +3 Query: 171 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 335 S A H A PP G+ F D+R L A +AV G P P G +L Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360 Query: 336 FI--RGKALVDEDAPAGELLLHDVVAVVCLGVELLAPGG 446 + A+ + PAG L H V LL P G Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV------THLLKPRG 393
>DPYS_HUMAN (Q14117) Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase)| (DHP) Length = 519 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +3 Query: 327 SNLFIRGKALVDED-APAGELLLHDVVAVVCLGVELLAPGGGVA 455 S L IRG +V++D + ++L+ D V V LG +LL PGG A Sbjct: 5 SRLLIRGGRVVNDDFSEVADVLVEDGV-VRALGHDLLPPGGAPA 47 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.125 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,579,647 Number of Sequences: 219361 Number of extensions: 1162376 Number of successful extensions: 3463 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3376 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3459 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
