ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7k03 |
|---|---|
| Clone Library Name | barley_pub |
>LEU2_SALTI (Q8Z9I2) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 465 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Frame = +3 Query: 105 YIKMDAEPPVFTTPNT--YVYANRHWLWLITCPSVFPRLLLHH-IIAARGQERRERIHRS 275 Y K+ VF PN +Y +RH + +T P F L HH + G+ H Sbjct: 5 YEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGLRAHHRPVRQPGKTFATMDHNV 64 Query: 276 RKHPFQTRASGEAAR 320 ASGE AR Sbjct: 65 STQTKDINASGEMAR 79
>LEU21_SALTY (P15717) 3-isopropylmalate dehydratase large subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 465 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Frame = +3 Query: 105 YIKMDAEPPVFTTPNT--YVYANRHWLWLITCPSVFPRLLLHH-IIAARGQERRERIHRS 275 Y K+ VF PN +Y +RH + +T P F L HH + G+ H Sbjct: 5 YEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGLRAHHRPVRQPGKTFATMDHNV 64 Query: 276 RKHPFQTRASGEAAR 320 ASGE AR Sbjct: 65 STQTKDINASGEMAR 79
>LEU2_SALPA (Q5PDG3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 466 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Frame = +3 Query: 105 YIKMDAEPPVFTTPNT--YVYANRHWLWLITCPSVFPRLLLHH-IIAARGQERRERIHRS 275 Y K+ VF PN +Y +RH + +T P F L HH + G+ H Sbjct: 6 YEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGLRAHHRPVRQPGKTFATMDHNV 65 Query: 276 RKHPFQTRASGEAAR 320 ASGE AR Sbjct: 66 STQTKDINASGEMAR 80
>LEU21_SALCH (Q57TE8) 3-isopropylmalate dehydratase large subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 466 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Frame = +3 Query: 105 YIKMDAEPPVFTTPNT--YVYANRHWLWLITCPSVFPRLLLHH-IIAARGQERRERIHRS 275 Y K+ VF PN +Y +RH + +T P F L HH + G+ H Sbjct: 6 YEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGLRAHHRPVRQPGKTFATMDHNV 65 Query: 276 RKHPFQTRASGEAAR 320 ASGE AR Sbjct: 66 STQTKDINASGEMAR 80
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 234 AARGQERRERIHRSRKHPFQTRASG 308 + R RER+H+SR+HP +R G Sbjct: 76 SGRSSRDRERMHKSREHPQASRCIG 100
>PAPD5_HUMAN (Q8NDF8) PAP associated domain-containing protein 5 (EC 2.7.7.-)| (Topoisomerase-related function protein 4-2) (TRF4-2) Length = 572 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = +1 Query: 238 HAVKSEERGFIDLE-----NILSKPGHQARRHGGSAA 333 HA+ +E+R F+ LE N +PG ARR G SA+ Sbjct: 12 HALPAEQRDFLPLETTNNNNNHHQPGAWARRAGSSAS 48
>SIP1_YEAST (P32578) Protein SIP1| Length = 863 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 1 IEHXNGHQLLACSTRTKLSLGGGDDDFT 84 I H N + + +TR K + GG +DDFT Sbjct: 357 ISHANNNGNIENNTRNKGNAGGSNDDFT 384
>VGLN_BEFV (P32596) Nonstructural glycoprotein GNS precursor| Length = 586 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = +2 Query: 104 LHQDGCRAACIYNSEHIRIRKSTLALAHHLSLRLPTVAASSYHSCTRSRAKREDSSISKT 283 LH G A ++N I+I++S + L LP SC RSR + +++++K Sbjct: 243 LHYCGKPAIKLFNGAIIKIKESPIVLG------LP--------SCNRSRIEMPETNLAKK 288 Query: 284 SFPNPG 301 + N G Sbjct: 289 RYSNVG 294
>HCAT_ECOLI (Q47142) Probable 3-phenylpropionic acid transporter| Length = 379 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +2 Query: 56 PWVVVMMILHGPVY*LLHQDGCR-AACIYNSEHIRIRKSTLALAHHLSLRLPTVAA 220 PW++V+ ILH + + H R A SE IR++ A+A S+ + TV A Sbjct: 291 PWLIVVQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFA 346
>HXA1_MOUSE (P09022) Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein| ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399) Length = 331 Score = 25.0 bits (53), Expect(2) = 7.2 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = -1 Query: 79 NHHHHHPGTVLF 44 +HHHHHP T + Sbjct: 65 HHHHHHPQTATY 76 Score = 21.2 bits (43), Expect(2) = 7.2 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = -1 Query: 130 GGSASILM**LVNRSM*NHHHHH 62 GG L+ V S +HHHHH Sbjct: 43 GGDDRFLVGRGVQISSPHHHHHH 65
>YEGE_ECOLI (P38097) Hypothetical protein yegE| Length = 1105 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +3 Query: 108 IKMDAEPPVFTTPNTYVYANRHWL--WLITCPSVFPRLLLHHIIAARGQERRERIH 269 + M A+P + TP TY+ ++ WL LI P+ ++++ A R H Sbjct: 248 LMMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETH 303
>TSN32_MOUSE (Q9JHH2) Tetraspanin-32 (Protein Phemx) (AML1-regulated| transmembrane protein 1) Length = 256 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +1 Query: 97 LATTSRWMQSRLYLQLRTHTYTQIDTGSGSSLVPPSSHG 213 LA T M +L H+Y +D SL PP SHG Sbjct: 206 LALTVYAMMLCAFLWFAIHSYHGLDRKGRYSLTPPRSHG 244
>DCP1B_PONPY (Q5R413) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 609 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -3 Query: 338 PRAAEPPCRLA*CPGLERMFSRS--MNPLSSLLTACSYDMMKQQPWEDGGTSDEPE 177 PR PP CP ++++ RS ++PLS ++ + +P E+G T E Sbjct: 276 PRRHSPPIEKQLCPAIQKLMVRSADLHPLS--------ELPENRPCENGSTHSAGE 323
>DCP1B_HUMAN (Q8IZD4) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 618 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -3 Query: 338 PRAAEPPCRLA*CPGLERMFSRS--MNPLSSLLTACSYDMMKQQPWEDGGTSDEPE 177 PR PP CP ++++ RS ++PLS ++ + +P E+G T E Sbjct: 280 PRRHSPPIEKQLCPAIQKLMVRSADLHPLS--------ELPENRPCENGSTHSAGE 327
>TBAN_PHYPO (P04105) Tubulin alpha-1B chain (Tubulin alpha-N chain)| Length = 449 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +1 Query: 55 SLGGGDDDFTWTGLLATTSRWMQSRLYLQLRTHTYTQIDTGSGSSLVPP 201 S+GGGDD F ++ + + +YL L +I TG+ L P Sbjct: 41 SVGGGDDAFNTFFSETSSGKHVPRAIYLDLEPTVIDEIRTGTYRQLFHP 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,795,012 Number of Sequences: 219361 Number of extensions: 1010891 Number of successful extensions: 3657 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3566 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
