ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal25m20 |
|---|---|
| Clone Library Name | barley_pub |
>BLC_ECOLI (P0A901) Outer membrane lipoprotein blc precursor| Length = 177 Score = 65.9 bits (159), Expect = 7e-11 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Frame = -2 Query: 499 ATYELMEDGATVHVLNETWS--KGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPIIPV 326 ATY L +DG ++V+N+ ++ +G EG AY A A LKV F+ P + Sbjct: 62 ATYSLRDDGG-LNVINKGYNPDRGMWQQSEGKAYFTG-APTRAALKVSFFGPFY------ 113 Query: 325 VGDYWVLYVDDDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAK 158 G Y V+ +D +Y++ALV P R LWIL R I +EV ++L A EG+DV+K Sbjct: 114 -GGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168
>BLC_ECO57 (P0A902) Outer membrane lipoprotein blc precursor| Length = 177 Score = 65.9 bits (159), Expect = 7e-11 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Frame = -2 Query: 499 ATYELMEDGATVHVLNETWS--KGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPIIPV 326 ATY L +DG ++V+N+ ++ +G EG AY A A LKV F+ P + Sbjct: 62 ATYSLRDDGG-LNVINKGYNPDRGMWQQSEGKAYFTG-APTRAALKVSFFGPFY------ 113 Query: 325 VGDYWVLYVDDDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAK 158 G Y V+ +D +Y++ALV P R LWIL R I +EV ++L A EG+DV+K Sbjct: 114 -GGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168
>BLC_CITFR (Q46036) Outer membrane lipoprotein blc precursor| Length = 177 Score = 65.1 bits (157), Expect = 1e-10 Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 3/118 (2%) Frame = -2 Query: 499 ATYELMEDGATVHVLNETWSKGKRDY--IEGTAY-KADPASDEAKLKVKFYVPPFLPIIP 329 ATY L +DG ++V+N+ ++ + + EG AY DP++ A LKV F+ P + Sbjct: 62 ATYSLRDDGG-INVINKGYNPDREMWQKTEGKAYFTGDPST--AALKVSFFGPFY----- 113 Query: 328 VVGDYWVLYVDDDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKL 155 G Y V+ +D +Y++ALV P R LWIL R I +E+ Q+L A EG++V KL Sbjct: 114 --GGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEMKQQMLAIATREGFEVNKL 169
>BLC_VIBCH (Q08790) Outer membrane lipoprotein blc precursor (Protein vlp)| Length = 171 Score = 59.3 bits (142), Expect = 6e-09 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Frame = -2 Query: 499 ATYELMEDGATVHVLNETWSKGKRDY--IEGTAYKADPASDEAKLKVKFYVPPFLPIIPV 326 A Y + DG + VLN +S+ K ++ EG AY + ++D LKV F+ P + Sbjct: 57 AEYRVRNDGG-ISVLNRGYSEEKGEWKEAEGKAYFVNGSTD-GYLKVSFFGPFY------ 108 Query: 325 VGDYWVLYVD-DDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKL 155 G Y V +D ++Y YA V P + LW+L R +E + ++ +E +KE G+D +L Sbjct: 109 -GSYVVFELDRENYSYAFVSGPNTEYLWLLSRTPTVERGILDKFIEMSKERGFDTNRL 165
>YR877_MIMIV (Q5URA7) Putative lipocalin R877 precursor| Length = 169 Score = 53.9 bits (128), Expect = 3e-07 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Frame = -2 Query: 508 DTRATYELMEDGATVHVLNETWSKGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPIIP 329 ++ A Y+L+E + V N G+ + + GTA PA++ ++ F P L + Sbjct: 53 NSTANYQLLEPNK-IQVTNNCEINGRINSVTGTAI---PAAN-TRIVSGFLTPASLMVNF 107 Query: 328 VVG--DYWVLYVDDDYQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKL 155 G Y V+++D++YQYA+V +LWIL R +I + YNQL+ +GYDV L Sbjct: 108 GYGFSPYNVIFIDENYQYAIVSGGN-DTLWILSRFKNINQSTYNQLVTIVYNQGYDVNNL 166
>APOD_MACFA (Q8SPI0) Apolipoprotein D precursor (Apo-D) (ApoD)| Length = 189 Score = 50.4 bits (119), Expect = 3e-06 Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Frame = -2 Query: 514 GRDTRATYELMEDGATVHVLNETWSKGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPI 335 GR +A Y L E+G + E + G + IEG A + ++ AKL+VKF+ F+P Sbjct: 59 GRCIQANYSLKENGKIKVLNQELRADGTVNQIEGEASPVN-ITEPAKLEVKFFW--FMPS 115 Query: 334 IPVVGDYWVLYVDDDYQYALVGEP-------RRKSLWILCRKTHIEEEVYNQLLEKAKEE 176 P YWVL D + YALV R WIL R H+ E + L Sbjct: 116 AP----YWVLATDYE-NYALVYSCVSIINLFRVDYAWILARNRHLPSETVDFLKNILTSN 170 Query: 175 GYDVAKLHKTPQSDPP 128 DV K+ T Q + P Sbjct: 171 NIDVKKMTVTDQENCP 186
>APOD_HUMAN (P05090) Apolipoprotein D precursor (Apo-D) (ApoD)| Length = 189 Score = 46.2 bits (108), Expect = 6e-05 Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 7/137 (5%) Frame = -2 Query: 517 DGRDTRATYELMEDGATVHVLNETWSKGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLP 338 +GR +A Y LME+G + E + G + IEG A + ++ AKL+VKF F+P Sbjct: 58 NGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVN-LTEPAKLEVKF--SWFMP 114 Query: 337 IIPVVGDYWVLYVDDDYQYALVGEP-------RRKSLWILCRKTHIEEEVYNQLLEKAKE 179 P YW+L D + YALV WIL R ++ E + L Sbjct: 115 SAP----YWILATDYE-NYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTS 169 Query: 178 EGYDVAKLHKTPQSDPP 128 DV K+ T Q + P Sbjct: 170 NNIDVKKMTVTDQVNCP 186
>APOD_RABIT (P37153) Apolipoprotein D precursor (Apo-D) (ApoD)| Length = 189 Score = 45.1 bits (105), Expect = 1e-04 Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 8/137 (5%) Frame = -2 Query: 514 GRDTRATYELMEDGATVHVLN-ETWSKGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLP 338 G +A Y LME+G + VLN E G + IEG A +++ ++ AKL VKF+ +P Sbjct: 60 GNCIQANYSLMENG-NIKVLNQELRPDGTVNQIEGQATQSN-LTEPAKLGVKFF--QLMP 115 Query: 337 IIPVVGDYWVLYVDDDYQYALVGEP-------RRKSLWILCRKTHIEEEVYNQLLEKAKE 179 P YWVL D + YALV +WIL R ++ E L + Sbjct: 116 TAP----YWVLATDYE-NYALVYSCTTIIWLFHMDHVWILGRNRYLPPETVTYLKDILTA 170 Query: 178 EGYDVAKLHKTPQSDPP 128 D+ K+ T Q + P Sbjct: 171 NNIDIEKMTVTDQVNCP 187
>APOD_RAT (P23593) Apolipoprotein D precursor (Apo-D) (ApoD)| Length = 189 Score = 43.9 bits (102), Expect = 3e-04 Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 8/137 (5%) Frame = -2 Query: 514 GRDTRATYELMEDGATVHVLN-ETWSKGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLP 338 G +A Y LME+G + VLN E G + +EG A K S+ AKL+V+F+ +P Sbjct: 59 GNCIQANYSLMENG-NIKVLNKELRPDGTLNQVEGEA-KQSNMSEPAKLEVQFF--SLMP 114 Query: 337 IIPVVGDYWVLYVDDDYQYALVGEPRR-------KSLWILCRKTHIEEEVYNQLLEKAKE 179 P YW+L D + YALV +WIL R ++ E L Sbjct: 115 PAP----YWILATDYE-SYALVYSCTTFFWFFHVDYVWILGRNPYLPPETITYLKYILTS 169 Query: 178 EGYDVAKLHKTPQSDPP 128 D+AK+ Q++ P Sbjct: 170 NDIDIAKITTKDQANCP 186
>LAZA_SCHAM (P49291) Lazarillo protein precursor| Length = 214 Score = 34.3 bits (77), Expect = 0.22 Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Frame = -2 Query: 469 TVHVLNETWSKGKRDYIEGTAYKADPASDEAKLKVKFYVPPFLPIIPVVGDYWVLYVD-D 293 T H +N T G A A + KL V F P P VG+YW+L D D Sbjct: 85 TTHEVNTT---------TGWAEFASELHTDGKLSVHF------PNSPSVGNYWILSTDYD 129 Query: 292 DYQ--YALVGEP----RRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKLHKTPQS 137 +Y ++ V P + WIL R + ++ ++ K D+ K KT QS Sbjct: 130 NYSIVWSCVKRPDSAASTEISWILLRSRNSSNMTLERVEDELKNLQLDLNKYTKTEQS 187
>MATR3_RAT (P43244) Matrin-3 (Nuclear scaffold protein P130/MAT3)| Length = 845 Score = 33.5 bits (75), Expect = 0.38 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2 Query: 280 ALVGEPRRKSLWILCRKTHIE-EEVYNQLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPT 104 A+V +K+LW R ++ E Y +L+ + G D+ K K+ + P+G +P+ Sbjct: 547 AMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPS 606 Query: 103 DSK 95 D K Sbjct: 607 DKK 609
>MATR3_MOUSE (Q8K310) Matrin-3| Length = 846 Score = 33.5 bits (75), Expect = 0.38 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2 Query: 280 ALVGEPRRKSLWILCRKTHIE-EEVYNQLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPT 104 A+V +K+LW R ++ E Y +L+ + G D+ K K+ + P+G +P+ Sbjct: 547 AMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPS 606 Query: 103 DSK 95 D K Sbjct: 607 DKK 609
>MATR3_HUMAN (P43243) Matrin-3| Length = 847 Score = 33.5 bits (75), Expect = 0.38 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2 Query: 280 ALVGEPRRKSLWILCRKTHIE-EEVYNQLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPT 104 A+V +K+LW R ++ E Y +L+ + G D+ K K+ + P+G +P+ Sbjct: 547 AMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPS 606 Query: 103 DSK 95 D K Sbjct: 607 DKK 609
>C94A2_VICSA (P98188) Cytochrome P450 94A2 (EC 1.14.-.-) (P450-dependent fatty| acid omega-hydroxylase) Length = 513 Score = 30.8 bits (68), Expect = 2.5 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -2 Query: 247 WILCRKTHIEEEVYNQLLEKAKEEGYDVAK 158 W+L + +H+E E+ ++ K++ GYD K Sbjct: 327 WLLSKHSHVENEILKEITGKSETVGYDEVK 356
>AT1B4_HUMAN (Q9UN42) X/potassium-transporting ATPase beta-m chain (X,K-ATPase| beta-m subunit) Length = 357 Score = 29.6 bits (65), Expect = 5.5 Identities = 18/71 (25%), Positives = 30/71 (42%) Frame = -2 Query: 289 YQYALVGEPRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYDVAKLHKTPQSDPPPEGDAA 110 Y+Y L ++ + EEE ++ K++EE + K + + EG Sbjct: 17 YRYRLDDPDEANQNYLADEEEEAEEEARVTVVPKSEEEEEEEEKEEEEEEEKEEEEGQGQ 76 Query: 109 PTDSKGAWWFK 77 PT + AWW K Sbjct: 77 PTGN--AWWQK 85
>Y1163_AQUAE (O67227) Hypothetical protein aq_1163| Length = 125 Score = 29.6 bits (65), Expect = 5.5 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = -2 Query: 328 VVGDYWVLYVDDDYQYALVGE---PRRKSLWILCRKTHIEEEVYNQLLEKAKEEGYD 167 V G+ W++YVD +A + E PR ++ W R I E + ++EE YD Sbjct: 61 VQGEGWIVYVDPFNNFADIYEANKPRYRNRWNQERPYDISETRFRVGFFPSREEAYD 117
>C94A1_VICSA (O81117) Cytochrome P450 94A1 (EC 1.14.-.-) (P450-dependent fatty| acid omega-hydroxylase) Length = 514 Score = 29.6 bits (65), Expect = 5.5 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 8/61 (13%) Frame = -2 Query: 247 WILCRKTHIEEEVYNQLLEKA--------KEEGYDVAKLHKTPQSDPPPEGDAAPTDSKG 92 W+L + +EEE+ N+L +K+ KE Y A L ++ + PP P DSK Sbjct: 329 WLLWKNPRVEEEIVNELSKKSELMVYDEVKEMVYTHAALSESMRLYPP-----VPMDSKE 383 Query: 91 A 89 A Sbjct: 384 A 384
>NEBU_HUMAN (P20929) Nebulin| Length = 6669 Score = 29.3 bits (64), Expect = 7.2 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -2 Query: 232 KTHIEEEVYNQLLEKAKEEGYDV 164 K + E +Y Q +E+AK+EGYD+ Sbjct: 3236 KINYSESLYRQAMEEAKKEGYDL 3258
>CGRF1_MOUSE (Q8BMJ7) Cell growth regulator with RING finger domain 1 (Cell| growth regulatory gene 19 protein) Length = 332 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 7/49 (14%) Frame = -2 Query: 226 HIEEEVYN-------QLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPTD 101 HI ++ Y Q L A+ + YD+ +L + + PPP D +P D Sbjct: 198 HIPDKTYKLPCRILYQYLILAQGQFYDLKQLFMSANNSPPPSNDESPED 246
>SYL_CAUCR (Q9A217) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 861 Score = 28.9 bits (63), Expect = 9.3 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = -2 Query: 178 EGYDVAKLHKTPQSDPPPEGDAAPTDS--KGAWWFKSLLW 65 E Y V SD PPE D T+S +G+W F LW Sbjct: 639 EAYGVDSARLFVMSDSPPERDVQWTNSGVEGSWRFTHRLW 678
>DPO3_STRA5 (P63984) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1468 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -2 Query: 202 QLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPTDS 98 QLLEKA +E + K+ + PP + PT + Sbjct: 181 QLLEKANQEAMQALEAQKSLEDSAPPSEEVTPTQN 215
>DPO3_STRA3 (P63983) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1468 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -2 Query: 202 QLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPTDS 98 QLLEKA +E + K+ + PP + PT + Sbjct: 181 QLLEKANQEAMQALEAQKSLEDSAPPSEEVTPTQN 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,640,011 Number of Sequences: 219361 Number of extensions: 838393 Number of successful extensions: 3724 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3721 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
