ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal26b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAD18_ORYSA (Q6Z4G0) MADS-box transcription factor 18 (OsMADS18)... 57 5e-08
2TRYP_SARBU (P51588) Trypsin precursor (EC 3.4.21.4) 33 0.63
3ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integ... 30 4.1
4SPEE_SHIFL (Q83MF0) Spermidine synthase (EC 2.5.1.16) (Putrescin... 30 4.1
5Y044_UREPA (Q9PRA1) Hypothetical protein UU044 30 4.1
6SPEG_HUMAN (Q15772) Striated muscle preferentially expressed pro... 30 5.3
7HOLB_BUCAP (Q8K9J2) DNA polymerase III delta' subunit (EC 2.7.7.7) 30 6.9
8KHSE_YEAST (P17423) Homoserine kinase (EC 2.7.1.39) (HSK) (HK) 29 9.1
9TNIK_HUMAN (Q9UKE5) TRAF2 and NCK-interacting kinase (EC 2.7.11.1) 29 9.1
10AEPE_BPA18 (Q37976) L-alanyl-D-glutamate peptidase (EC 3.4.-.-) 29 9.1

>MAD18_ORYSA (Q6Z4G0) MADS-box transcription factor 18 (OsMADS18) (MADS-box|
           protein 2) (OsMADS2) (MADS-box protein 28) (OsMADS28)
           (FDRMADS7)
          Length = 249

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 29/59 (49%), Positives = 33/59 (55%)
 Frame = -3

Query: 597 EQLSGAXXXXXXXXXXTAQDSMAPPNIGPYQSRGGGDPEPQPSPAQANNSNLPPWMLRT 421
           E+ +GA          TA D +   N    Q RG G+ E QPSPAQA NS LPPWMLRT
Sbjct: 188 EEQNGATPSTSSPTPVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRT 246



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>TRYP_SARBU (P51588) Trypsin precursor (EC 3.4.21.4)|
          Length = 254

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 70  GWNTKTVSTCKTIPQIH*SLHTKVQPQDRAHRSAKKKGN*NVETRHCSL*CRKSSRQEDP 249
           GW TK   TC ++P+    +   +  Q     +  K G+   +T  C+   +K + Q D 
Sbjct: 149 GWGTKCFLTCVSLPKTLQEVEVDIVDQKACASNEFKYGSQIQDTMVCAYALKKDACQGDS 208

Query: 250 IHPVAKTHGLIGGYT-GSHCRR 312
             P+   + L+G  + GS C R
Sbjct: 209 GGPLVANNQLVGIVSWGSGCAR 230



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>ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integrin alpha-7|
           heavy chain; Integrin alpha-7 light chain]
          Length = 1106

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 534 MAPPNIGPYQSRGGGDPEPQPSPAQANN 451
           +A  + GPY++ G  D +P+PSP  AN+
Sbjct: 206 LAQVDDGPYEAGGEKDQDPRPSPVPANS 233



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>SPEE_SHIFL (Q83MF0) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 287

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 253 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 426
           H  AK   +IGG  G+  R  T H+ + SI       +    GVV  CRQ  P+  A   
Sbjct: 74  HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128

Query: 427 EHPRWQIAV 453
           + PR+Q+ +
Sbjct: 129 DDPRFQLVI 137



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>Y044_UREPA (Q9PRA1) Hypothetical protein UU044|
          Length = 782

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 543 QDSMAPPNIGPYQSRGGGDPEPQPSPAQA-NNSN 445
           ++ + PPN  P +     +P PQP P Q  NNSN
Sbjct: 139 KEELLPPNPPPPKEEPKPEPNPQPQPQQVPNNSN 172



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>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3223

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 540  DSMAPPNIGPYQSRGGGDPEPQPSPAQANNSNLPPWMLRTI 418
            D+  PP   P Q +    PEP+P P +A+    PP  L+T+
Sbjct: 2201 DAPQPPAPQPAQDKA---PEPRPEPVRASKPAPPPQALQTL 2238



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>HOLB_BUCAP (Q8K9J2) DNA polymerase III delta' subunit (EC 2.7.7.7)|
          Length = 328

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 98  VKPYRKSIKAYTRKSNHKIVLIDQRKKKG 184
           +KPY+K I+ + RK  H  +LI  +K  G
Sbjct: 8   IKPYKKIIRLHERKKAHHAILIKTQKGMG 36



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>KHSE_YEAST (P17423) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 356

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = +1

Query: 253 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQPSSVADGAEH 432
           HP   T  ++GG+ GS  R  T        +   +    PSGG   G   P    D   H
Sbjct: 145 HPDNITAAMMGGFCGSFLRDLTPQEVERREIPLAEVLPEPSGGEDTGLVPPLPPTDIGRH 204

Query: 433 PR--WQIAVVCL 462
            +  W  A+ C+
Sbjct: 205 VKYQWNPAIKCI 216



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>TNIK_HUMAN (Q9UKE5) TRAF2 and NCK-interacting kinase (EC 2.7.11.1)|
          Length = 1360

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 457 KQQQSATVDAPHHRQQMKAGDSLIRLHLKATMAPDTRPLW 338
           KQ++   V   H RQ+ +  +     H K  M+P  +P W
Sbjct: 494 KQERDYLVSLQHQRQEQRPVEKKPLYHYKEGMSPSEKPAW 533



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>AEPE_BPA18 (Q37976) L-alanyl-D-glutamate peptidase (EC 3.4.-.-)|
          Length = 281

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 198 NKTLLPIVQEKLKTGRPHSPCSKDTW 275
           N TLL     KLK G+PH+P SK+T+
Sbjct: 189 NTTLLA----KLKAGKPHTPASKNTY 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,139,252
Number of Sequences: 219361
Number of extensions: 2124409
Number of successful extensions: 6833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6811
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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