ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal26b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3 32 1.3
2LKH1_SCHPO (Q10156) Dual specificity protein kinase lkh1 (EC 2.7... 30 6.6
3SURE_HAHCH (Q2SKW4) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleosid... 30 8.7

>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 309 AILATDCVCVCVCLFAKKKDCCCVIHVFLFHVCV 208
           +IL++ CVCVCVC+      C CV+     +VCV
Sbjct: 367 SILSSVCVCVCVCVCMYV--CMCVMESACVYVCV 398



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>LKH1_SCHPO (Q10156) Dual specificity protein kinase lkh1 (EC 2.7.12.1)|
          Length = 575

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -1

Query: 604 LNPPRMVDRTTHLRPSLLPAEQHGYAPVHSTNVVPVRFCGVFSVARLPHLLNQMHPHRLI 425
           L PP +    +H  P  LP+    + P+    V+P           LP L  Q+HP+RL 
Sbjct: 38  LRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIP----------NLPKL--QVHPNRLP 85

Query: 424 RPAGEH 407
            P   H
Sbjct: 86  HPIHNH 91



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>SURE_HAHCH (Q2SKW4) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 249

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 505 VPVRFCGVFSVARLPHLLNQMHPHRLIRPAGEHYFWIA 392
           VP+       + RL H L    PH ++ P G   +WIA
Sbjct: 164 VPLEDIRGIQLTRLGHRLKGGEPHEIVDPRGRKRYWIA 201


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,841,903
Number of Sequences: 219361
Number of extensions: 2205321
Number of successful extensions: 5162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5130
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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