ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal25l12 |
|---|---|
| Clone Library Name | barley_pub |
>AP4S1_HUMAN (Q9Y587) AP-4 complex subunit sigma-1 (Adapter-related protein| complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit) Length = 144 Score = 169 bits (429), Expect = 4e-42 Identities = 72/131 (54%), Positives = 111/131 (84%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 GQTRL++YYEH+ +++R LE E+++ CL+R+++QCSF+E++++K++YR+YA+LF +VGV Sbjct: 12 GQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQYAALFIVVGV 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 ++ ENE+AI EFIH VE +D +F V ELDIMF+L+KVH +L+EMV+NGCIVET++ I Sbjct: 72 NDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARI 131 Query: 218 LAPIQLMEKTS 186 LAP+ +++K S Sbjct: 132 LAPLLILDKMS 142
>AP4S1_MOUSE (Q9WVL1) AP-4 complex subunit sigma-1 (Adapter-related protein| complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit) Length = 144 Score = 166 bits (420), Expect = 4e-41 Identities = 72/131 (54%), Positives = 109/131 (83%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 GQTRL++YYEH+ +++R LE E+ + CL+R+ +QCSF+E++++K++YR+YA+LF +VGV Sbjct: 12 GQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQYAALFVVVGV 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 ++ ENE+AI EFIH VE +D +F V ELDIMF+L+KVH +L+EMV+NGCIVET++ I Sbjct: 72 NDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARI 131 Query: 218 LAPIQLMEKTS 186 LAP+ +++K S Sbjct: 132 LAPLLILDKLS 142
>AP1S2_MOUSE (Q9DB50) AP-1 complex subunit sigma-2 (Adapter-related protein| complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor protein complex AP-1 sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly protein complex Length = 160 Score = 126 bits (317), Expect = 4e-29 Identities = 58/125 (46%), Positives = 91/125 (72%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+ RL ++Y LS E++ + E+V+ LAR + CSF+E R+ K+VY+RYASL+F + Sbjct: 11 GKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAI 70 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 ++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E ++ G + ETSK+N+ Sbjct: 71 EDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNV 130 Query: 218 LAPIQ 204 L I+ Sbjct: 131 LKAIE 135
>AP1S2_HUMAN (P56377) AP-1 complex subunit sigma-2 (Adapter-related protein| complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor protein complex AP-1 sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly protein complex Length = 157 Score = 126 bits (317), Expect = 4e-29 Identities = 58/125 (46%), Positives = 91/125 (72%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+ RL ++Y LS E++ + E+V+ LAR + CSF+E R+ K+VY+RYASL+F + Sbjct: 11 GKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAI 70 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 ++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E ++ G + ETSK+N+ Sbjct: 71 EDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNV 130 Query: 218 LAPIQ 204 L I+ Sbjct: 131 LKAIE 135
>AP2S_NEUCR (Q7SAQ1) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 124 bits (310), Expect = 3e-28 Identities = 66/130 (50%), Positives = 91/130 (70%), Gaps = 1/130 (0%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYRRYASLFFLVG 402 G+TRLA++Y S +E+ L+GEI R R + Q +FVE RN+KVVYRRYA LFF Sbjct: 12 GKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVYRRYAGLFFCAC 71 Query: 401 VDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQN 222 VD ++NELA LE IH VE +D FGNVCELD++F+ KV+ +L+E+ + G I ETSKQ Sbjct: 72 VDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQV 131 Query: 221 ILAPIQLMEK 192 +L ++ ++K Sbjct: 132 VLTRLEHLDK 141
>AP1S1_MOUSE (P61967) AP-1 complex subunit sigma-1A (Adapter-related protein| complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor protein complex AP-1 sigma-1A subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly protein complex Length = 158 Score = 122 bits (305), Expect = 1e-27 Identities = 57/125 (45%), Positives = 89/125 (71%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+ RL ++Y S ER+ + E+++ LAR + CSF+E R+ KVVY+RYASL+F + Sbjct: 12 GKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAI 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 + +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E +M G + +TSK+++ Sbjct: 72 EGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSV 131 Query: 218 LAPIQ 204 L I+ Sbjct: 132 LKAIE 136
>AP1S1_HUMAN (P61966) AP-1 complex subunit sigma-1A (Adapter-related protein| complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor protein complex AP-1 sigma-1A subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly protein complex Length = 158 Score = 122 bits (305), Expect = 1e-27 Identities = 57/125 (45%), Positives = 89/125 (71%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+ RL ++Y S ER+ + E+++ LAR + CSF+E R+ KVVY+RYASL+F + Sbjct: 12 GKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAI 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 + +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E +M G + +TSK+++ Sbjct: 72 EGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSV 131 Query: 218 LAPIQ 204 L I+ Sbjct: 132 LKAIE 136
>AP2S_GIBZE (Q4ICG5) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 121 bits (304), Expect = 1e-27 Identities = 63/130 (48%), Positives = 90/130 (69%), Gaps = 1/130 (0%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYRRYASLFFLVG 402 G+TRLA++Y S +++ L+GE+ R R + Q +FVE RN K+VYRRYA LFF Sbjct: 12 GKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYRRYAGLFFCAC 71 Query: 401 VDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQN 222 VD ++NELA LE IH VE +D FGNVCELD++F+ KV+ +L+E+ + G I ETSKQ Sbjct: 72 VDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQV 131 Query: 221 ILAPIQLMEK 192 +L ++ ++K Sbjct: 132 VLTRLEHLDK 141
>AP1T1_YEAST (P35181) AP-1 complex subunit theta-1 (Theta(1)-adaptin) (Clathrin| coat assembly protein AP19) (Clathrin coat-associated protein AP19) (Golgi adaptor AP-1 19 kDa adaptin) (HA1 19 kDa subunit) (Clathrin assembly protein complex 1 small chain) Length = 156 Score = 118 bits (295), Expect = 1e-26 Identities = 58/130 (44%), Positives = 91/130 (70%), Gaps = 2/130 (1%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+ RL ++Y +S E+ + ++ LAR + C+ +E+ ++KVVY+RYASL+F+VG+ Sbjct: 14 GKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVVYKRYASLYFIVGM 73 Query: 398 DND-ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM-NGCIVETSKQ 225 D +NEL LE IH VETMD +FGNVCELDI+F+ KV+ +L EM+M +G I E+S++ Sbjct: 74 TPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEMIMCDGSIAESSRK 133 Query: 224 NILAPIQLME 195 +L + +M+ Sbjct: 134 EVLHHVTVMD 143
>AP2S_ASPFU (Q4WS49) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 145 Score = 116 bits (290), Expect = 5e-26 Identities = 64/131 (48%), Positives = 91/131 (69%), Gaps = 2/131 (1%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEH-RNYKVVYRRYASLFFLV 405 G+TRLA++Y S +E+ L+GE+ R R + Q +FVE R+ K+VYRRYA LFF V Sbjct: 13 GKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRRYAGLFFCV 72 Query: 404 GVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQ 225 VD +NELA LE IH VE +D+ FGNVCELD++F+ KV+ +L+E+ + G I ETSKQ Sbjct: 73 CVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQ 132 Query: 224 NILAPIQLMEK 192 +L ++ ++K Sbjct: 133 VVLTRLEHLDK 143
>AP1S3_MOUSE (Q7TN05) AP-1 complex subunit sigma-3 (Adapter-related protein| complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex Length = 154 Score = 116 bits (290), Expect = 5e-26 Identities = 53/125 (42%), Positives = 86/125 (68%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+ RL ++Y L ER+ + +I++ L+R + SF++ + K+VY+RYASL+F + Sbjct: 12 GKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKRYASLYFCCAI 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 +N +NEL LE +H VE +D++FGNVCELDI+F+ EK +F+L+E ++ G I ETSK+ Sbjct: 72 ENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKTA 131 Query: 218 LAPIQ 204 + I+ Sbjct: 132 VKAIE 136
>AP1S3_HUMAN (Q96PC3) AP-1 complex subunit sigma-3 (Adapter-related protein| complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex Length = 154 Score = 115 bits (288), Expect = 9e-26 Identities = 56/125 (44%), Positives = 86/125 (68%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+ RL ++Y L ER+ + EIV+ L+R + SFV+ + K+VY+RYASL+F + Sbjct: 12 GKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYASLYFCCAI 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 +N +NEL LE +H VE +D++FGNVCELDI+F+ EK +F+L+E ++ G I ETSK+ Sbjct: 72 ENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKIA 131 Query: 218 LAPIQ 204 + I+ Sbjct: 132 VKAIE 136
>AP2S_EMENI (Q5BFF8) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 145 Score = 114 bits (286), Expect = 2e-25 Identities = 63/131 (48%), Positives = 90/131 (68%), Gaps = 2/131 (1%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEH-RNYKVVYRRYASLFFLV 405 G+TRLA++Y S +E+ L+GE+ R R + Q +FVE R+ K+VYRRYA LFF Sbjct: 13 GKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRRYAGLFFCA 72 Query: 404 GVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQ 225 VD +NELA LE IH VE +D+ FGNVCELD++F+ KV+ +L+E+ + G I ETSKQ Sbjct: 73 CVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQ 132 Query: 224 NILAPIQLMEK 192 +L ++ ++K Sbjct: 133 VVLTRLEHLDK 143
>AP3S2_PONPY (Q5RDP9) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 113 bits (282), Expect = 4e-25 Identities = 53/135 (39%), Positives = 89/135 (65%), Gaps = 6/135 (4%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVVYRRYASL 417 G+ RL ++Y+ + ++ + E L R D C+F+E +YK++YR YA+L Sbjct: 12 GKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATL 71 Query: 416 FFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVE 237 +F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+E+VM G ++E Sbjct: 72 YFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLE 131 Query: 236 TSKQNILAPIQLMEK 192 T+ I+A I+ + Sbjct: 132 TNMNEIVAQIEAQNR 146
>AP3S2_MOUSE (Q8BSZ2) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 113 bits (282), Expect = 4e-25 Identities = 53/135 (39%), Positives = 89/135 (65%), Gaps = 6/135 (4%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVVYRRYASL 417 G+ RL ++Y+ + ++ + E L R D C+F+E +YK++YR YA+L Sbjct: 12 GKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATL 71 Query: 416 FFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVE 237 +F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+E+VM G ++E Sbjct: 72 YFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLE 131 Query: 236 TSKQNILAPIQLMEK 192 T+ I+A I+ + Sbjct: 132 TNMNEIVAQIEAQNR 146
>AP3S2_HUMAN (P59780) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 113 bits (282), Expect = 4e-25 Identities = 53/135 (39%), Positives = 89/135 (65%), Gaps = 6/135 (4%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVVYRRYASL 417 G+ RL ++Y+ + ++ + E L R D C+F+E +YK++YR YA+L Sbjct: 12 GKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATL 71 Query: 416 FFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVE 237 +F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+E+VM G ++E Sbjct: 72 YFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLE 131 Query: 236 TSKQNILAPIQLMEK 192 T+ I+A I+ + Sbjct: 132 TNMNEIVAQIEAQNR 146
>AP2S_SCHPO (Q9Y7L6) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 111 bits (277), Expect = 2e-24 Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 1/130 (0%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYRRYASLFFLVG 402 G+ RL++YY DE+ L+ I + R + Q +F+E N K+VYRRYA L+F Sbjct: 12 GKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYRRYAGLYFCFC 71 Query: 401 VDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQN 222 VD+ +N+LAILE IH VE +D FGNVCELD++F+ KV +L+E+++ G I E++K++ Sbjct: 72 VDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILGGEIGESNKKS 131 Query: 221 ILAPIQLMEK 192 +L I+ +EK Sbjct: 132 VLERIEALEK 141
>AP2S1_MAIZE (O50016) AP-2 complex subunit sigma-1 (Clathrin coat assembly| protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin assembly protein 2 small chain) Length = 132 Score = 110 bits (276), Expect = 2e-24 Identities = 58/120 (48%), Positives = 81/120 (67%), Gaps = 2/120 (1%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+TRLA+YY L E+ +E E+ R + R + +FVE R +KV+YRRYA LFF + V Sbjct: 12 GKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSICV 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKV--HFMLEEMVMNGCIVETSKQ 225 D +NELA LE IHL VE +D F NVCELD++F+ KV + +L+E ++ G + ETSK+ Sbjct: 72 DITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFILAGELQETSKR 131
>AP2S1_RAT (P62744) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin a Length = 142 Score = 109 bits (272), Expect = 6e-24 Identities = 53/128 (41%), Positives = 85/128 (66%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRYA L+F + V Sbjct: 12 GKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICV 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 D ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G I ETS+ + Sbjct: 72 DVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKV 131 Query: 218 LAPIQLME 195 L + +++ Sbjct: 132 LKQLLMLQ 139
>AP2S1_PONPY (Q5R940) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin Length = 142 Score = 109 bits (272), Expect = 6e-24 Identities = 53/128 (41%), Positives = 85/128 (66%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRYA L+F + V Sbjct: 12 GKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICV 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 D ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G I ETS+ + Sbjct: 72 DVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKV 131 Query: 218 LAPIQLME 195 L + +++ Sbjct: 132 LKQLLMLQ 139
>AP2S1_MOUSE (P62743) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin Length = 142 Score = 109 bits (272), Expect = 6e-24 Identities = 53/128 (41%), Positives = 85/128 (66%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRYA L+F + V Sbjct: 12 GKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICV 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 D ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G I ETS+ + Sbjct: 72 DVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKV 131 Query: 218 LAPIQLME 195 L + +++ Sbjct: 132 LKQLLMLQ 139
>AP2S1_HUMAN (P53680) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (HA2 17 kDa subunit) (Clathr Length = 142 Score = 109 bits (272), Expect = 6e-24 Identities = 53/128 (41%), Positives = 85/128 (66%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRYA L+F + V Sbjct: 12 GKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICV 71 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 D ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G I ETS+ + Sbjct: 72 DVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKV 131 Query: 218 LAPIQLME 195 L + +++ Sbjct: 132 LKQLLMLQ 139
>AP3S1_MOUSE (Q9DCR2) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) Length = 193 Score = 105 bits (263), Expect = 7e-23 Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 6/135 (4%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVVYRRYASL 417 G+ RL+++Y+ S D ++ + E R + C+F+E + K++YR YA+L Sbjct: 12 GKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATL 71 Query: 416 FFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVE 237 +F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH +L EMVM G ++E Sbjct: 72 YFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLE 131 Query: 236 TSKQNILAPIQLMEK 192 T+ I+ I K Sbjct: 132 TNMNEIVTQIDAQNK 146
>AP3S1_HUMAN (Q92572) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 193 Score = 105 bits (263), Expect = 7e-23 Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 6/135 (4%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVVYRRYASL 417 G+ RL+++Y+ S D ++ + E R + C+F+E + K++YR YA+L Sbjct: 12 GKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATL 71 Query: 416 FFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVE 237 +F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH +L EMVM G ++E Sbjct: 72 YFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLE 131 Query: 236 TSKQNILAPIQLMEK 192 T+ I+ I K Sbjct: 132 TNMNEIVTQIDAQNK 146
>AP3S_SCHPO (Q09905) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 165 Score = 94.0 bits (232), Expect = 3e-19 Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 5/135 (3%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHR----NYKVVYRRYASLFF 411 G+ RL ++Y + ++ L G+I R C+F+E +++YR+YA+L+F Sbjct: 12 GKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNRIIYRQYATLYF 71 Query: 410 LVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETS 231 + VD E+EL IL+ I + VE +DR F NVCELD++F +++H +L E+V G ++ET+ Sbjct: 72 VFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSGGLVLETN 131 Query: 230 -KQNILAPIQLMEKT 189 + +LA M KT Sbjct: 132 LNEIVLAAQNQMPKT 146
>AP2S_YEAST (Q00381) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) Length = 147 Score = 90.5 bits (223), Expect = 3e-18 Identities = 52/133 (39%), Positives = 85/133 (63%), Gaps = 4/133 (3%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEG--EIVRKCLARTDQ-QCSFVEHRNY-KVVYRRYASLFF 411 G RL ++++ S D +R+ + +I R +R + Q +FVE + K++YRRYA L+F Sbjct: 13 GVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDSTKLIYRRYAGLYF 72 Query: 410 LVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETS 231 ++GVD ++E L IHL VE +D FGNVCELDI+F+ KV+ +++EM + G I E S Sbjct: 73 VMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMDEMFIGGEIQEIS 132 Query: 230 KQNILAPIQLMEK 192 K +L + ++++ Sbjct: 133 KDMLLERLSILDR 145
>AP3S_YEAST (P47064) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 194 Score = 79.7 bits (195), Expect = 5e-15 Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 18/148 (12%) Frame = -3 Query: 575 QTRLAQYYEHLSLDERRALEGEIVRKCLAR-TDQQCSF-----------------VEHRN 450 Q RL ++Y + L +++ L ++ R +D Q SF V + + Sbjct: 13 QPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLSNENNNDEVNNED 72 Query: 449 YKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFML 270 +++Y+ YA+L+F VD+ E+ELAIL+ I VE++DR F V ELD++F+ + + +L Sbjct: 73 IQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELDLIFNWQTLESVL 132 Query: 269 EEMVMNGCIVETSKQNILAPIQLMEKTS 186 EE+V G ++ET+ I+A + + K + Sbjct: 133 EEIVQGGMVIETNVNRIVASVDELNKAA 160
>AP3S_ASHGO (Q75F71) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 185 Score = 79.3 bits (194), Expect = 7e-15 Identities = 44/144 (30%), Positives = 80/144 (55%), Gaps = 14/144 (9%) Frame = -3 Query: 575 QTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVE-------------HRNYKVV 438 Q RL +YY + L +++ L ++ R Q SF+ + + +++ Sbjct: 13 QPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSSGSETINEDIQII 72 Query: 437 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 258 Y+ YA+L+F VD+ E+ELAIL+ I VE +DR F V ELD++F+ + + +LEE++ Sbjct: 73 YKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFNWQTLESVLEEII 132 Query: 257 MNGCIVETSKQNILAPIQLMEKTS 186 G ++ET+ + I+ + + +TS Sbjct: 133 QGGMVIETNVKKIVETVDELNRTS 156
>COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 47.8 bits (112), Expect = 2e-05 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -3 Query: 578 GQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLV 405 G A+YY+ + S+ E++A E I K RTD + + +E VVY+ L+F V Sbjct: 23 GDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSSIDLYFYV 79 Query: 404 GVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNGCIVETSK 228 + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G I+E+ Sbjct: 80 IGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDP 139 Query: 227 QNILAPIQL 201 Q ++ + L Sbjct: 140 QQVVHRVAL 148
>COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 47.8 bits (112), Expect = 2e-05 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -3 Query: 578 GQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLV 405 G A+YY+ + S+ E++A E I K RTD + + +E VVY+ L+F V Sbjct: 23 GDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSSIDLYFYV 79 Query: 404 GVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNGCIVETSK 228 + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G I+E+ Sbjct: 80 IGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDP 139 Query: 227 QNILAPIQL 201 Q ++ + L Sbjct: 140 QQVVHRVAL 148
>COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 47.8 bits (112), Expect = 2e-05 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -3 Query: 578 GQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLV 405 G A+YY+ + S+ E++A E I K RTD + + +E VVY+ L+F V Sbjct: 23 GDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSSIDLYFYV 79 Query: 404 GVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNGCIVETSK 228 + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G I+E+ Sbjct: 80 IGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDP 139 Query: 227 QNILAPIQL 201 Q ++ + L Sbjct: 140 QQVVHRVAL 148
>COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 47.8 bits (112), Expect = 2e-05 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = -3 Query: 578 GQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLV 405 G A+YY+ + S+ E++A E I K RTD + + +E VVY+ L+F V Sbjct: 23 GDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSSIDLYFYV 79 Query: 404 GVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNGCIVETSK 228 + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G I+E+ Sbjct: 80 IGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDP 139 Query: 227 QNILAPIQL 201 Q ++ + L Sbjct: 140 QQVVHRVAL 148
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 44.3 bits (103), Expect = 3e-04 Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 3/127 (2%) Frame = -3 Query: 578 GQTRLAQYYEHL--SLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLV 405 G+ LA+YY+ S+ E+ E + K +RT+ + +F +VY+ LF V Sbjct: 56 GRRLLAKYYDDTFPSMKEQMVFEKNVFNKT-SRTESEIAFFG--GMTIVYKNSIDLFLYV 112 Query: 404 GVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNGCIVETSK 228 + ENEL ++ + L E+++ NV + ++ +++ +L+E+V G I+E+ Sbjct: 113 VGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDP 172 Query: 227 QNILAPI 207 Q ++ + Sbjct: 173 QQVIQKV 179
>AP2M_SCHPO (Q09718) AP-2 complex subunit mu (Probable clathrin coat assembly| protein AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) Length = 446 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/122 (21%), Positives = 61/122 (50%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G T + + + H D ++++ L TD + V + +Y ++ L+ + Sbjct: 12 GDTLICKTFRH---DLKKSVTEIFRVAILTNTDYRHPIVSIGSSTYIYTKHEDLYVVAIT 68 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNI 219 + N + +LEF+ L++ + +FG + E + ++ + +L+EM+ G I++T++ + Sbjct: 69 KGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYG-IIQTTEPDA 127 Query: 218 LA 213 LA Sbjct: 128 LA 129
>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 205 Score = 42.0 bits (97), Expect = 0.001 Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Frame = -3 Query: 578 GQTRLAQYYEHL--SLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLV 405 G+ LA+YY+ S+ E+ E + K +RT+ + +F+ +VY+ +F V Sbjct: 51 GRRLLAKYYDDTFPSVKEQMVFEKNVFNKT-SRTESEIAFLG--GMTIVYKSSIDIFLYV 107 Query: 404 GVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNGCIVETSK 228 + ENEL ++ + L +++ NV + ++ +++ +L+E V G I+E+ Sbjct: 108 VGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVDGGVILESDP 167 Query: 227 QNILAPI 207 Q ++ + Sbjct: 168 QQVIQKV 174
>AP3M2_RAT (P53678) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa subu Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = -3 Query: 458 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 279 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 278 FMLEEMVMNGCIVETSKQNIL 216 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M2_MOUSE (Q8R2R9) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = -3 Query: 458 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 279 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 278 FMLEEMVMNGCIVETSKQNIL 216 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M2_HUMAN (P53677) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = -3 Query: 458 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 279 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 278 FMLEEMVMNGCIVETSKQNIL 216 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M1_RAT (P53676) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) (Clathrin coat assembly protein AP47 homolog 1) (Clathrin coat-associated protein AP47 homolog 1) (Golgi ada Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = -3 Query: 419 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 240 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 239 ETSKQNIL 216 T + NIL Sbjct: 124 AT-ESNIL 130
>AP3M1_MOUSE (Q9JKC8) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = -3 Query: 419 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 240 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 239 ETSKQNIL 216 T + NIL Sbjct: 124 AT-ESNIL 130
>AP3M1_HUMAN (Q9Y2T2) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = -3 Query: 419 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 240 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 239 ETSKQNIL 216 T + NIL Sbjct: 124 AT-ESNIL 130
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 39.3 bits (90), Expect = 0.008 Identities = 26/79 (32%), Positives = 43/79 (54%) Frame = -3 Query: 452 NYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFM 273 +Y V R+ F V + + L ++EF+H + ET+ +FG E I ++ V+ + Sbjct: 54 HYLVSTHRHGISFVAV-IQAEVPPLFVIEFLHRVAETLQDYFGECSEASIKDNVVIVYEL 112 Query: 272 LEEMVMNGCIVETSKQNIL 216 LEEM+ NG + T + NIL Sbjct: 113 LEEMLDNGFPLAT-ESNIL 130
>RSC8_YEAST (P43609) Chromatin structure remodeling complex protein RSC8| (Remodel the structure of chromatin complex subunit 8) (SWI3 homolog) Length = 557 Score = 32.7 bits (73), Expect = 0.77 Identities = 15/56 (26%), Positives = 30/56 (53%) Frame = -3 Query: 392 DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQ 225 +E++ I E + L +E ++ F +C+L+ +EK+ ++ E M + SKQ Sbjct: 423 EESQAIIQELVKLTMEKLESKFTKLCDLETQLEMEKLKYVKESEKMLNDRLSLSKQ 478
>COPD_YEAST (P43621) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| Length = 545 Score = 31.6 bits (70), Expect = 1.7 Identities = 20/110 (18%), Positives = 53/110 (48%) Frame = -3 Query: 578 GQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGV 399 G+ L++ ++ LS D L + ++ +FVE ++ + VYR + + + ++ Sbjct: 12 GKPLLSRQFKDLSKDRVLELLSNF-QNLVSEISSDHTFVEDKHVRYVYRPFDNYYIILIT 70 Query: 398 DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 249 + N + L ++L +T++ + + + +I + ++ +E+V G Sbjct: 71 NRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSMG 120
>COPD_CHICK (Q5ZL57) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 510 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 494 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 315 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 314 ELDIMFHLEKVHFMLEEMVMNG 249 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_RAT (Q66H80) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 494 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 315 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 314 ELDIMFHLEKVHFMLEEMVMNG 249 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_PONPY (Q5RA77) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 494 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 315 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 314 ELDIMFHLEKVHFMLEEMVMNG 249 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_MOUSE (Q5XJY5) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 494 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 315 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 314 ELDIMFHLEKVHFMLEEMVMNG 249 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_HUMAN (P48444) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 494 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 315 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 314 ELDIMFHLEKVHFMLEEMVMNG 249 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_BOVIN (P53619) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -3 Query: 494 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 315 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 314 ELDIMFHLEKVHFMLEEMVMNG 249 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>VPS54_DROME (Q9VLC0) Vacuolar protein sorting protein 54 (Protein scattered)| Length = 940 Score = 30.4 bits (67), Expect = 3.8 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Frame = +1 Query: 211 GANMFCLLVSTMQPFITISSSMKCTFSRWNMMSSSHTLP-----KWRSMVSTRRCMNSR 372 GA LLV QP+ +S+S+ + S+H LP R++V RC NSR Sbjct: 696 GAGNPVLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRCFNSR 754
>YJBB_SHIFL (P0AF44) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -3 Query: 419 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 291 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YJBB_ECOLI (P0AF43) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -3 Query: 419 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 291 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YJBB_ECO57 (Q8X5Z7) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -3 Query: 419 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 291 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +1 Query: 262 ISSSMKCTFSRWNMMSSSHTLPKWRSMVSTRRCMNS---RMANSFSSLSTPT 408 I+ SM S M SSS +W S+ ST ++S +++S+SSLS+P+ Sbjct: 117 ITPSMSIFSSTSPMSSSSSITSEWSSLTSTTPTLSSSATSLSSSWSSLSSPS 168
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 29.3 bits (64), Expect = 8.5 Identities = 20/90 (22%), Positives = 38/90 (42%) Frame = -3 Query: 518 EGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETM 339 + ++ CL + F++H + VV + N AI F+H LVE + Sbjct: 42 QSNLIPPCLNHNGLEYLFIQHNDLYVV---------AIVTSLSANAAAIFTFLHKLVEVL 92 Query: 338 DRHFGNVCELDIMFHLEKVHFMLEEMVMNG 249 + V E I + ++ +L+E++ G Sbjct: 93 SDYLKTVEEESIRDNFVIIYELLDEVMDYG 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,932,903 Number of Sequences: 219361 Number of extensions: 1293761 Number of successful extensions: 3913 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 3775 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3898 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
