>ref|XM_473883.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1602

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 166  tgactccaacagccctgacttccacatgctgcc 198
            |||||||||| ||||| ||||||||||||||||
Sbjct: 1588 tgactccaactgccctaacttccacatgctgcc 1556

>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
             complete sequence
          Length = 133279

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 166   tgactccaacagccctgacttccacatgctgcc 198
             |||||||||| ||||| ||||||||||||||||
Sbjct: 74778 tgactccaactgccctaacttccacatgctgcc 74746

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 166      tgactccaacagccctgacttccacatgctgcc 198
                |||||||||| ||||| ||||||||||||||||
Sbjct: 31253176 tgactccaactgccctaacttccacatgctgcc 31253144

>dbj|AK069739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027J22, full
            insert sequence
          Length = 2334

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 166  tgactccaacagccctgacttccacatgctgcc 198
            |||||||||| ||||| ||||||||||||||||
Sbjct: 2022 tgactccaactgccctaacttccacatgctgcc 1990

>gb|AC127586.4| Mus musculus BAC clone RP24-142A16 from chromosome 7, complete sequence
          Length = 164692

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 27    atttacaagcagtacaccatatt 49
             |||||||||||||||||||||||
Sbjct: 38251 atttacaagcagtacaccatatt 38273

>gb|AC159005.3| Mus musculus BAC clone RP23-67F4 from chromosome 7, complete sequence
          Length = 230018

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 27     atttacaagcagtacaccatatt 49
              |||||||||||||||||||||||
Sbjct: 165634 atttacaagcagtacaccatatt 165656

>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12,
              complete sequence
          Length = 166936

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 124    tacttaagtactgcaataggccccgtagctagc 156
              |||||| ||||||||| |||| |||||||||||
Sbjct: 119342 tacttacgtactgcaaaaggcaccgtagctagc 119310

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 233     ctgcgcctcgtccagcaggcc 253
               |||||||||||||||||||||
Sbjct: 2864566 ctgcgcctcgtccagcaggcc 2864546

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 124     tacttaagtactgcaataggccccgtagctagc 156
               |||||| ||||||||| |||| |||||||||||
Sbjct: 6994084 tacttacgtactgcaaaaggcaccgtagctagc 6994052

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 322     cgtcgccgtcagtgtgggaga 342
               |||||||||||||||||||||
Sbjct: 9562655 cgtcgccgtcagtgtgggaga 9562675

>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0693E08
          Length = 157969

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   cgtcgccgtcagtgtgggaga 342
             |||||||||||||||||||||
Sbjct: 26873 cgtcgccgtcagtgtgggaga 26893

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 124     tacttaagtactgcaataggccccgtagctagc 156
               |||||| ||||||||| |||| |||||||||||
Sbjct: 7060551 tacttacgtactgcaaaaggcaccgtagctagc 7060519

>ref|XM_536814.2| PREDICTED: Canis familiaris similar to RGD, leucine-rich repeat,
            tropomodulin and proline-rich containing protein
            (LOC479683), mRNA
          Length = 4128

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 230  ggcctgcgcctcgtccagcaggcc 253
            |||||||||| |||||||||||||
Sbjct: 1788 ggcctgcgccacgtccagcaggcc 1765

>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ggcctgcgcctcgtccagca 249
             ||||||||||||||||||||
Sbjct: 65854 ggcctgcgcctcgtccagca 65873

>emb|AL590626.9| Mouse DNA sequence from clone RP23-143O13 on chromosome 13 Contains the
              3' end of a novel gene and a CpG island, complete sequence
          Length = 179282

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ggatatttacaagcagtaca 42
              ||||||||||||||||||||
Sbjct: 114839 ggatatttacaagcagtaca 114858

>gb|AE012112.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 20 of
            460 of the complete genome
          Length = 12215

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  gcctcgtccagcaggccatc 256
            ||||||||||||||||||||
Sbjct: 9941 gcctcgtccagcaggccatc 9922

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gcctcgtccagcaggccatc 256
              ||||||||||||||||||||
Sbjct: 219396 gcctcgtccagcaggccatc 219377

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 178     ccctgacttccacatgctgc 197
               ||||||||||||||||||||
Sbjct: 1036218 ccctgacttccacatgctgc 1036237

>gb|AC154549.2| Mus musculus BAC clone RP23-443L15 from chromosome 17, complete
             sequence
          Length = 191523

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   actccaacagccctgacttc 187
             ||||||||||||||||||||
Sbjct: 86722 actccaacagccctgacttc 86703

>gb|AC008736.6|AC008736 Homo sapiens chromosome 19 clone CTD-2538C1, complete sequence
          Length = 191925

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   gagatgcagacagcgcacca 287
             ||||||||||||||||||||
Sbjct: 64974 gagatgcagacagcgcacca 64993

>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     aagcagtacaccatatttac 52
              ||||||||||||||||||||
Sbjct: 876701 aagcagtacaccatatttac 876720

>gb|AC154676.2| Mus musculus BAC clone RP23-146O19 from 17, complete sequence
          Length = 180352

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   actccaacagccctgacttc 187
             ||||||||||||||||||||
Sbjct: 18368 actccaacagccctgacttc 18349

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     ggcctgcgcctcgtccagca 249
               ||||||||||||||||||||
Sbjct: 3194557 ggcctgcgcctcgtccagca 3194576

>emb|AM114763.1| Platynereis dumerilii mRNA for crooked neck protein (crn gene)
          Length = 2340

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  atttacaagcagtacaccat 46
           ||||||||||||||||||||
Sbjct: 865 atttacaagcagtacaccat 884


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,248,938
Number of Sequences: 3902068
Number of extensions: 2248938
Number of successful extensions: 40966
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40764
Number of HSP's gapped (non-prelim): 202
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)