ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal26a01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 963 bits (486), Expect = 0.0 Identities = 521/526 (99%), Gaps = 5/526 (0%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcggacttag-gtaggtaaa-catcagatattaaaagtggc 58 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct: 1653 gcaatcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggc 1594 Query: 59 atgcttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttc 117 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1593 atgcttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttc 1534 Query: 118 ttggcattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctccttt 176 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1533 ttggcattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctccttt 1474 Query: 177 acctcctcctatgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaa 235 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1473 acctcctcctatgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaa 1414 Query: 236 ggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1413 ggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 1354 Query: 296 gtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1353 gtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 1294 Query: 356 tagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagtt 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1293 tagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagtt 1234 Query: 416 caccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatc 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1233 caccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatc 1174 Query: 476 gtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgt 521 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1173 gtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgt 1128
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 761 bits (384), Expect = 0.0 Identities = 495/528 (93%), Gaps = 8/528 (1%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaa-catcagatattaaaa 53 ||||||||||||||||||||||| ||||||||| | |||| |||||||||||||| Sbjct: 724 gcaatcgcttggatgcgatgcggtacttaggtacaaaggataaaacatcagatattaaat 665 Query: 54 gtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgta 113 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 664 -tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaa 606 Query: 114 gttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcc 173 |||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| || Sbjct: 605 gttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccc 546 Query: 174 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtag 233 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 545 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtag 486 Query: 234 aaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 293 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 aaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 426 Query: 294 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 366 Query: 354 tctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgag 413 |||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||| Sbjct: 365 tctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtcccgcgag 306 Query: 414 ttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca 473 ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 305 ttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcgcacctcg 246 Query: 474 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgt 521 |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 245 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgt 198
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 761 bits (384), Expect = 0.0 Identities = 495/528 (93%), Gaps = 8/528 (1%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaa-catcagatattaaaa 53 ||||||||||||||||||||||| ||||||||| | |||| |||||||||||||| Sbjct: 1574 gcaatcgcttggatgcgatgcggtacttaggtacaaaggataaaacatcagatattaaat 1515 Query: 54 gtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgta 113 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 1514 -tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaa 1456 Query: 114 gttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcc 173 |||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| || Sbjct: 1455 gttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccc 1396 Query: 174 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtag 233 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1395 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtag 1336 Query: 234 aaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 293 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1335 aaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 1276 Query: 294 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1275 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 1216 Query: 354 tctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgag 413 |||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||| Sbjct: 1215 tctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtcccgcgag 1156 Query: 414 ttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca 473 ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 1155 ttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcgcacctcg 1096 Query: 474 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgt 521 |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1095 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgt 1048
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Minus Query: 177 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 237 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 297 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 357 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 417 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 477 tcgtacacccgagcacgcagagcaccgaaaaagtc 511 ||||||||||||||||||||||||||||||||||| Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 345 bits (174), Expect = 9e-92 Identities = 181/182 (99%), Gaps = 1/182 (0%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcggacttaggtaggtaaa-catcagatattaaaagtggca 59 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 7704 gcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggca 7645 Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7644 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 7585 Query: 120 ggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7584 ggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 7525 Query: 180 tc 181 || Sbjct: 7524 tc 7523 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 303 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 362 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 363 ttctcgactgtcatctttggctgctcgaa 391 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 452 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 511 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 512 aatgga 517 ||||| Sbjct: 3752 gatgga 3747
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 611 bits (308), Expect = e-171 Identities = 428/467 (91%), Gaps = 2/467 (0%) Strand = Plus / Minus Query: 51 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 110 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468 Query: 111 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 170 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408 Query: 171 tcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccg 230 ||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||| Sbjct: 1407 tcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttctaaccg 1350 Query: 231 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 290 |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct: 1349 tagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggctcatg 1290 Query: 291 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 350 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 1289 taagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtggccg 1230 Query: 351 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 410 ||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||||||| Sbjct: 1229 tactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtcccgc 1170 Query: 411 gagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacc 470 |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||| Sbjct: 1169 gagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcgcacc 1110 Query: 471 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 517 ||| ||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1109 tcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatgga 1063
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 585 bits (295), Expect = e-164 Identities = 295/295 (100%) Strand = Plus / Minus Query: 227 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 287 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 347 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 407 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 467 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgt 521 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgt 873 Score = 341 bits (172), Expect = 1e-90 Identities = 179/180 (99%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 1 gcaatcgcttggatgcgatgcggacttaggtaggtaaa-catcagatattaaaagtggca 59 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1344 gcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggca 1285 Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 1225 Query: 120 ggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1224 ggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 521 bits (263), Expect = e-145 Identities = 296/307 (96%) Strand = Plus / Minus Query: 205 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 264 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 265 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 325 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 385 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 444 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 445 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 504 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 505 aaaagtc 511 ||||||| Sbjct: 8 aaaagtc 2
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 387 bits (195), Expect = e-104 Identities = 267/291 (91%) Strand = Plus / Minus Query: 227 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 287 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 346 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 347 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 406 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 407 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 466 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 467 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 517 |||||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatgga 1073 Score = 176 bits (89), Expect = 5e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 51 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 110 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 111 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 170 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 171 tcctttacc 179 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 120 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 176 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 177 acctcctcct 186 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 226 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 285 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 286 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 345 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 346 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 406 cccgcgagttcaccagcctcttgccaatgttctc 439 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 516 gattg 520 ||||| Sbjct: 1020 gattg 1016
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 120 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 176 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 177 acctcctcct 186 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 226 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 285 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 286 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 345 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 346 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 406 cccgcgagttcaccagcctcttgccaatgttctc 439 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 516 gattg 520 ||||| Sbjct: 1058 gattg 1054
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 120 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 176 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 177 acctcctcct 186 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 226 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 285 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 286 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 345 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 346 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 406 cccgcgagttcaccagcctcttgccaatgttctc 439 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 516 gattg 520 ||||| Sbjct: 1057 gattg 1053
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 120 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 176 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 177 acctcctcct 186 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 226 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 285 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 286 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 345 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 346 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 406 cccgcgagttcaccagcctcttgccaatgttctc 439 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 516 gattg 520 ||||| Sbjct: 841 gattg 837
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 120 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 176 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 177 acctcctcct 186 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 226 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 285 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 286 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 345 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 346 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 406 cccgcgagttcaccagcctcttgccaatgttctc 439 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 516 gattg 520 ||||| Sbjct: 1062 gattg 1058
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 223 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 282 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 283 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 342 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 343 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 402 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 403 cgtcccgcgagttcaccagcctcttgccaatgttctc 439 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 78 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 137 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 138 accttccggcacggg 152 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 505 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 411 gagttcaccagcctcttgccaatgttctc 439 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 223 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 282 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 283 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 342 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 343 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 402 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 403 cgtcccgcgagttcaccagcctcttgccaatgttctc 439 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 78 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 137 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 138 accttccggcacggg 152 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 505 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 411 gagttcaccagcctcttgccaatgttctc 439 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 226 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 285 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 286 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 345 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 346 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 406 cccgcgagttcaccagcctcttgccaatgttctc 439 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 516 gattg 520 ||||| Sbjct: 1026 gattg 1022
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 228 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 287 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 288 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 347 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 348 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 407 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 408 cgcgagttcaccagcctcttgccaatgttctc 439 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 516 gattg 520 ||||| Sbjct: 1021 gattg 1017
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 223 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 282 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 283 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 342 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 343 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 402 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 403 cgtcccgcgagttcaccagcctcttgccaatgttctc 439 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 78 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 137 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 138 accttccggcacggg 152 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 505 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 411 gagttcaccagcctcttgccaatgttctc 439 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 223 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 282 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 283 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 342 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 343 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 402 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 403 cgtcccgcgagttcaccagcctcttgccaatgttctc 439 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 78 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 137 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 138 accttccggcacggg 152 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 505 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 411 gagttcaccagcctcttgccaatgttctc 439 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 228 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 287 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 288 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 347 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 348 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 407 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 408 cgcgagttcaccagcctcttgccaatgttctc 439 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 516 gattg 520 ||||| Sbjct: 1056 gattg 1052
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 224 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 283 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 284 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 343 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 344 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 403 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 404 gtcccgcgagttcaccagcctcttgcc 430 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 70 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 129 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 130 tcggtgcaaccttc 143 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 458 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 517 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714 Query: 518 ttg 520 ||| Sbjct: 713 ttg 711
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 226 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 285 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 286 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 345 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 346 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 406 cccgcgagttcaccagcctcttgccaatgttctc 439 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 516 gattg 520 ||||| Sbjct: 275 gattg 271
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 226 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 285 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 286 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 345 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 346 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 406 cccgcgagttcaccagcctcttgccaatgttctc 439 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 120 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 176 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 177 acctcctcct 186 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 456 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 515 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 516 gattg 520 ||||| Sbjct: 1069 gattg 1065
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 66 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 125 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 126 ttggtcggtgcaaccttccggcacgggca 154 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 231 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 290 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 291 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 350 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 351 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 410 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 411 gagttcaccagcctcttgcc 430 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 70 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 129 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 130 tcggtgcaaccttc 143 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 458 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 517 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908 Query: 518 ttg 520 ||| Sbjct: 907 ttg 905
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 117 bits (59), Expect = 4e-23 Identities = 176/215 (81%) Strand = Plus / Minus Query: 303 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 362 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 363 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 422 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 423 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 482 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 483 acccgagcacgcagagcaccgaaaaagtcaatgga 517 ||||| || ||||| || ||||| ||||| ||||| Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatgga 1028
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 103 bits (52), Expect = 6e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 224 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 283 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 284 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 343 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 344 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 403 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 404 gtcccgcgagttcaccagcctctt 427 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 70 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 129 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 130 tcggtgcaaccttc 143 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 458 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 517 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015 Query: 518 ttg 520 ||| Sbjct: 1014 ttg 1012
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 3e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 231 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 290 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 291 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 350 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 351 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 410 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 411 gagttcaccagcctctt 427 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 70 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 129 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 130 tcggtgcaaccttc 143 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 458 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 517 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878 Query: 518 ttg 520 ||| Sbjct: 877 ttg 875
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 232 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 291 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 292 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 351 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 352 actctagcagcttctcgactgtcatctttggctgctcgaa 391 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 232 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 291 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 292 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 351 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 352 actctagcagcttctcgactgtcatctttggctgctcgaa 391 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 232 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 291 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 292 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 351 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 352 actctagcagcttctcgactgtcatctttggctgctcgaa 391 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 303 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 362 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 363 ttctcgactgtcatctttggctgctcgaa 391 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 452 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 511 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 512 aatgga 517 ||||| Sbjct: 1183 gatgga 1178
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 8e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 249 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 308 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 309 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 364 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 60 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 119 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 120 ggcattttggtcggtgcaaccttccggcacgggca 154 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 260 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 319 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 320 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 379 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 380 tggctgctcgaa 391 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 494 cagagcaccgaaaaagtcaatggattg 520 ||||||||||||||||||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattg 1087
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 474 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 517 ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 2680
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 474 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 517 ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 990
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.45 Identities = 43/50 (86%) Strand = Plus / Minus Query: 252 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 301 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 taaacatcagatattaaaagtg 56 |||||||||||||||||||||| Sbjct: 3040441 taaacatcagatattaaaagtg 3040420
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 catcacccagagctgcctggct 286 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 taaacatcagatattaaaagtg 56 |||||||||||||||||||||| Sbjct: 3040386 taaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 taaacatcagatattaaaagtg 56 |||||||||||||||||||||| Sbjct: 114402 taaacatcagatattaaaagtg 114423
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 atgcagcaagagatggtgggt 207 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 303 agctgcacacgcttgacattgtcctgctc 331 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cctttacctcctcctatgca 191 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 catcacccagagctgcctggctca 288 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cctttacctcctcctatgca 191 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 7.0 Identities = 68/84 (80%) Strand = Plus / Minus Query: 261 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 320 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 321 ttgtcctgctcctggacgagcatg 344 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cctttacctcctcctatgca 191 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gtcagcaagctgcacacgct 315 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 tcagatattaaaagtggcat 60 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 tcagatattaaaagtggcat 60 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 tcagatattaaaagtggcat 60 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 catcacccagagctgcctggctca 288 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ttgacattgtcctgctcctg 334 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 catcacccagagctgcctggctca 288 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 ggtgtaaaggcagctgccgtcgtcgctc 96 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cctttacctcctcctatgca 191 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 catcacccagagctgcctggctca 288 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 catcacccagagctgcctggctca 288 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 catcacccagagctgcctggctca 288 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tggcatgcttaaaaggtgta 74 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ttgacattgtcctgctcctg 334 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 catcacccagagctgcctggctca 288 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttgctgtgctcctttacctcctc 184 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 cctttacctcctcctatgca 191 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 atcagatattaaaagtggcatgct 63 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,443,719 Number of Sequences: 3902068 Number of extensions: 3443719 Number of successful extensions: 63326 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 63021 Number of HSP's gapped (non-prelim): 253 length of query: 521 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 498 effective length of database: 17,143,297,704 effective search space: 8537362256592 effective search space used: 8537362256592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
