ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25j23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BBS2_RAT (Q99MH9) Bardet-Biedl syndrome 2 protein homolog 30 1.8
2MYO7A_MOUSE (P97479) Myosin-7A (Myosin VIIa) 29 3.9
3ADA10_XENLA (Q8JIY1) ADAM 10 precursor (EC 3.4.24.81) (A disinte... 29 3.9

>BBS2_RAT (Q99MH9) Bardet-Biedl syndrome 2 protein homolog|
          Length = 721

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 57  ERLARGRMHVVHPGTAHIVSSVDTYVHMSVDMPMHVH 167
           E +  G  HVVHP T ++ SS+   +    D+P+ +H
Sbjct: 420 EGIFAGESHVVHPSTHNLSSSIRVPITPPKDVPVDLH 456



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>MYO7A_MOUSE (P97479) Myosin-7A (Myosin VIIa)|
          Length = 2215

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 60  RLARGRMHVVHPGTAHIVSSVDTYVHMSVDMPMHVHAYVRE 182
           RL R R H+++  T  I+ +V+ Y  +S+  P H+  Y  +
Sbjct: 85  RLIRYRDHLIYTYTGSILVAVNPYQLLSIYSPEHIRQYTNK 125



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>ADA10_XENLA (Q8JIY1) ADAM 10 precursor (EC 3.4.24.81) (A disintegrin and|
           metalloproteinase domain 10) (Kuzbanian protein homolog)
           (xKuz)
          Length = 749

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 29  TGSVILRRRGATSEGTHACCSSGDSPHRFFSRYVRTHERGYADACPRVRA 178
           +G VILR++ A     + C     + H F+ RY  T E   A     V+A
Sbjct: 204 SGPVILRKKRAAQAEKNTCQLFIQTDHLFYKRYGETREAVIAQISSHVKA 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,839,352
Number of Sequences: 219361
Number of extensions: 1034341
Number of successful extensions: 2525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2522
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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