ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7j20 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 213 bits (541), Expect = 5e-55 Identities = 109/144 (75%), Positives = 119/144 (82%) Frame = -1 Query: 666 QYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFR 487 QYRADAQ+MEEWARSQNGN LVEFSS+DGEIE+ILKDISERAQGKG+FSYSRFFAVGLFR Sbjct: 144 QYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFR 203 Query: 486 LLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXXXXXXXXXXXXXXX 307 LLEL+NATEPT+LDKLCAALNINK+SVDRDLDVYRN+LSKLVQA Sbjct: 204 LLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKRE 263 Query: 306 XXXETPKPNEAVAKFDGSTYPLKH 235 ETPK NEAV KFDGS ++H Sbjct: 264 ERSETPKSNEAVTKFDGSLNSMRH 287
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 169 bits (427), Expect = 9e-42 Identities = 88/139 (63%), Positives = 104/139 (74%) Frame = -1 Query: 666 QYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFR 487 QYR DAQ+MEEWARSQ LV+FSS++G+IE++LKDI+ RA K FSYSRFFAVGLFR Sbjct: 150 QYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFR 209 Query: 486 LLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXXXXXXXXXXXXXXX 307 LLEL++AT+PTVLDKLCA+LNINKKSVDRDLDVYRNLLSKLVQA Sbjct: 210 LLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQG 269 Query: 306 XXXETPKPNEAVAKFDGST 250 ++ K NE ++K G T Sbjct: 270 ERAQSQKANETISKCLGDT 288
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 166 bits (421), Expect = 4e-41 Identities = 80/104 (76%), Positives = 94/104 (90%) Frame = -1 Query: 666 QYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFR 487 QYRADAQ++EEWAR+QN N LV+FSS++GEIE+I KDI++RA K F YSR FAVGLFR Sbjct: 151 QYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFR 210 Query: 486 LLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 355 LLEL+N T+PT+L+KLCAALN+NKKSVDRDLDVYRNLLSKLVQA Sbjct: 211 LLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQA 254
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 60.5 bits (145), Expect = 4e-09 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 13/117 (11%) Frame = -1 Query: 666 QYRADAQRMEEWARSQNGNLLVEFSSR------DGEIESILKDISERAQGKGNFSYSRFF 505 +YR DA+R++ A+S N LV + S+ D ++++ L+ I+ + NF YSR F Sbjct: 90 RYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIANNS----NFKYSRLF 145 Query: 504 AVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 355 A+GLF LLE SN L + A L+++ +DL++YR+ L K+ QA Sbjct: 146 AIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRSNLDKMTQA 202
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 59.7 bits (143), Expect = 8e-09 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 13/117 (11%) Frame = -1 Query: 666 QYRADAQRMEEWARSQNGNLLVEFSSR------DGEIESILKDISERAQGKGNFSYSRFF 505 +YR DA+R++ A+S N LV + S+ D ++++ L+ I+ NF YSR F Sbjct: 90 RYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIASNP----NFKYSRLF 145 Query: 504 AVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 355 A+GLF LLE SN L + A L+++ + +DL++YR+ L K+ QA Sbjct: 146 AIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRSNLDKMTQA 202
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 50.8 bits (120), Expect = 4e-06 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 10/114 (8%) Frame = -1 Query: 666 QYRADAQRMEEWARSQNGNLLVEFSSRD---GEIESILKDISERAQGKGNFSYSRFFAVG 496 QYR DA + E R + + ++ + G +++ + G+ F YSR FA+G Sbjct: 90 QYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAPELVRSSFQAIAGRSEFKYSRLFAIG 149 Query: 495 LFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSKLVQA 355 LF LLE + +P L A+ ++ + +DLD+YR+ L K+ QA Sbjct: 150 LFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEKMEQA 203
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 50.8 bits (120), Expect = 4e-06 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 10/114 (8%) Frame = -1 Query: 666 QYRADAQRMEEWARSQNGNLLVEFSSRD---GEIESILKDISERAQGKGNFSYSRFFAVG 496 QYR DA + E R + + ++ + G +++ + G+ F YSR FA+G Sbjct: 90 QYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAPELVRSSFQAIAGRSEFKYSRLFAIG 149 Query: 495 LFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSKLVQA 355 LF LLE + +P L A+ ++ + +DLD+YR+ L K+ QA Sbjct: 150 LFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEKMEQA 203
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 42.0 bits (97), Expect = 0.002 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 7/107 (6%) Frame = -1 Query: 654 DAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLLEL 475 D + ++ W + Q G E++ K + A G F YSR AVGL LL Sbjct: 106 DLEEVQGWIQQQG----------KGAPEALAKALRNTA-GSTTFHYSRLMAVGLLSLLAS 154 Query: 474 SNATEPT-------VLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 355 + E + + +L ++ +K V++DL++Y++ L K+ QA Sbjct: 155 AQGDESSDPEKLSQIAHELSESVGFSKARVEKDLNLYKSNLEKMAQA 201
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 38.5 bits (88), Expect = 0.018 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Frame = -1 Query: 600 EFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLL-----ELSNATE--PTVLDK 442 E +S D + + L I +R + F YSR FA+GL+ LL E+ + E L + Sbjct: 117 EQASGDNLLLNTLTGIHQRHK----FKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTR 172 Query: 441 LCAALNINKKSVDRDLDVYRNLLSKLVQ 358 L L+++ V +DLD+YR+ L K+ Q Sbjct: 173 LSELLDLSLDKVVKDLDLYRSNLEKVDQ 200
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 37.7 bits (86), Expect = 0.031 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 5/109 (4%) Frame = -1 Query: 666 QYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFR 487 Q + DA +++ +L E +S G+ + L ++ + YSR AVGL+ Sbjct: 90 QLKEDAASWQQYQGRPLSQILDELNS--GQPSAPLNSLNHTGK------YSRLHAVGLYA 141 Query: 486 LLELSNATEPTV-----LDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 355 L+ A E T+ LD+L + + + V RDL++YR+ L K+ QA Sbjct: 142 FLQ-ELAGEVTIHLNETLDQLAPVIPLPIEKVKRDLELYRSNLDKINQA 189
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 37.0 bits (84), Expect = 0.053 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Frame = -1 Query: 564 LKDISERAQGKGN---FSYSRFFAVGLFRLLE-------LSNATEPTVLDKLCAALNINK 415 LK + + G N F YSR F++GL +LE +S L ++C L ++ Sbjct: 125 LKAMGDTLAGIANAERFKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDY 184 Query: 414 KSVDRDLDVYRNLLSKL 364 V RDLD + ++L ++ Sbjct: 185 NRVKRDLDFFHSVLERI 201
>HMCS1_RAT (P17425) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 35.0 bits (79), Expect = 0.20 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Frame = -1 Query: 624 SQNGNLLVEFSSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPT 454 +QNGN+ SS G + S+L S ++ GK G FSY A L+ L +AT + Sbjct: 339 NQNGNMYT--SSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGS 396 Query: 453 VLDKLCAALNINKKSVD 403 LDK+ A+L K +D Sbjct: 397 ALDKITASLCDLKSRLD 413
>HMCS1_PONPY (Q5R7Z9) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 35.0 bits (79), Expect = 0.20 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Frame = -1 Query: 624 SQNGNLLVEFSSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPT 454 +QNGN+ SS G + S+L S ++ GK G FSY A L+ L +AT + Sbjct: 339 NQNGNMYT--SSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGS 396 Query: 453 VLDKLCAALNINKKSVD 403 LDK+ A+L K +D Sbjct: 397 ALDKITASLCDLKSRLD 413
>HMCS1_MOUSE (Q8JZK9) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 35.0 bits (79), Expect = 0.20 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Frame = -1 Query: 624 SQNGNLLVEFSSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPT 454 +QNGN+ SS G + S+L S ++ GK G FSY A L+ L +AT + Sbjct: 339 NQNGNMYT--SSVYGSLASVLAQYSPQQLAGKRVGVFSYGSGLAATLYSLKVTQDATPGS 396 Query: 453 VLDKLCAALNINKKSVD 403 LDK+ A+L K +D Sbjct: 397 ALDKITASLCDLKSRLD 413
>HMCS1_HUMAN (Q01581) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 35.0 bits (79), Expect = 0.20 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Frame = -1 Query: 624 SQNGNLLVEFSSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPT 454 +QNGN+ SS G + S+L S ++ GK G FSY A L+ L +AT + Sbjct: 339 NQNGNMYT--SSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGS 396 Query: 453 VLDKLCAALNINKKSVD 403 LDK+ A+L K +D Sbjct: 397 ALDKITASLCDLKSRLD 413
>HMCS1_CRIGR (P13704) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 34.7 bits (78), Expect = 0.26 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Frame = -1 Query: 624 SQNGNLLVEFSSRDGEIESILKDIS-ERAQGK--GNFSYSRFFAVGLFRLLELSNATEPT 454 +QNGN+ SS G + S+L S ++ GK G FSY A L+ L +AT + Sbjct: 339 NQNGNMYT--SSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGS 396 Query: 453 VLDKLCAALNINKKSVD 403 LDK+ A+L K +D Sbjct: 397 ALDKVTASLCDLKSRLD 413
>THF1_PROMA (Q7VC23) Protein thf1| Length = 214 Score = 34.3 bits (77), Expect = 0.35 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Frame = -1 Query: 579 EIESILKDISERAQGKGNFSYSRFFAVGLFRLLELSN-----ATEPTVLDKLCAALNINK 415 EI+ + I+ Q + YSR A+G++ L+ N + ++ + AL +K Sbjct: 117 EIKKSVGGIALSNQSGKDKYYSRLHAIGIYELISNINEDKKEGDDKEIISECVEALGFSK 176 Query: 414 KSVDRDLDVYRNLLSKL 364 V++D++ Y+N + K+ Sbjct: 177 DRVEKDINQYKNSMEKI 193
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 33.1 bits (74), Expect = 0.77 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Frame = -1 Query: 564 LKDISERAQGKGNFSYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKS 409 LK I ER + ++YSR AVGL+ E+ S EP L+ + + L + + Sbjct: 126 LKAILERMT-QPPYAYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTER 184 Query: 408 VDRDLDVYRNLLSKLVQA 355 V +DL++YR+ L ++ QA Sbjct: 185 VRKDLELYRSSLDRMKQA 202
>HMCS1_CHICK (P23228) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 522 Score = 32.0 bits (71), Expect = 1.7 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Frame = -1 Query: 624 SQNGNLLVEFSSRDGEIESILKDISER---AQGKGNFSYSRFFAVGLFRLLELSNATEPT 454 +QNGN+ S G + S+L S Q FSY FA L+ + +AT + Sbjct: 340 NQNGNMYTP--SVYGCLASLLAQYSPEHLAGQRISEFSYGSGFAATLYSIRVTQDATPGS 397 Query: 453 VLDKLCAALNINKKSVD 403 LDK+ A+L+ K +D Sbjct: 398 ALDKITASLSDLKARLD 414
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 31.2 bits (69), Expect = 2.9 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Frame = -1 Query: 525 FSYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLS 370 ++YSR AVGL+ E S EP L+ + L + + V +DL++YR+ L Sbjct: 138 YAYSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLD 197 Query: 369 KLVQA 355 +L QA Sbjct: 198 RLKQA 202
>GFAP_HUMAN (P14136) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 432 Score = 30.4 bits (67), Expect = 5.0 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -3 Query: 466 DGANRTGQALRCSKHQ*K--KRG*RP*RLPQLTVEIGSSQGTS*GIRREGKEEESREIGD 293 D A R + LR +KH+ +R +L LT ++ S +GT+ + R+ +E+E R + + Sbjct: 266 DAAARNAELLRQAKHEANDYRR-----QLQSLTCDLESLRGTNESLERQMREQEERHVRE 320 Query: 292 A 290 A Sbjct: 321 A 321
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Frame = -1 Query: 594 SSRDGEIESILKDISERAQGKGNFSYSRFFAVGLFRLLE--LSNATEPTVLD------KL 439 +++ ++++ ++ + G+G+ YSR A+G+ RL E +A +P D +L Sbjct: 101 AAKTESVDAMDSHLAGQKLGEGSH-YSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKEL 159 Query: 438 CAALNINKKSVDRDLDVY 385 ALN + V++DL ++ Sbjct: 160 STALNFPAERVEKDLSLF 177
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 195 QILTVIH-LDSVENYRGHLWLLLAWCSTR 112 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 195 QILTVIH-LDSVENYRGHLWLLLAWCSTR 112 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 195 QILTVIH-LDSVENYRGHLWLLLAWCSTR 112 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>ITSN2_HUMAN (Q9NZM3) Intersectin-2 (SH3 domain-containing protein 1B) (SH3P18)| (SH3P18-like WASP-associated protein) Length = 1696 Score = 30.0 bits (66), Expect = 6.5 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 6/104 (5%) Frame = -1 Query: 654 DAQRMEEWARSQNGNLLVEFSSRDGEI---ESILKDIS---ERAQGKGNFSYSRFFAVGL 493 + QR EW R + LL + + EI S K++ E GK R V Sbjct: 454 ERQRRLEWERIRRQELLNQKNREQEEIVRLNSKKKNLHLELEALNGKHQQISGRLQDV-- 511 Query: 492 FRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLV 361 RL + + TE VLDK C + K + ++L Y+N L LV Sbjct: 512 -RLKKQTQKTELEVLDKQCDLEIMEIKQLQQELQEYQNKLIYLV 554
>NU5C_SACOF (Q6ENQ0) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 738 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Frame = -1 Query: 612 NLLVEFSSRDGEIESILKDISERAQGKG--NFSYSRFFAVGLFRLLELSNATEPTVLD 445 N LV+ + + ++ + K I + +G +F Y+R F +G+ RL EL++ + V+D Sbjct: 637 NSLVKKNPKKSFLDEVKKKIYSWSYNRGYIDFFYTRVFILGIRRLAELTHFFDKGVID 694
>NU5C_SACHY (Q6L3E3) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 738 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Frame = -1 Query: 612 NLLVEFSSRDGEIESILKDISERAQGKG--NFSYSRFFAVGLFRLLELSNATEPTVLD 445 N LV+ + + ++ + K I + +G +F Y+R F +G+ RL EL++ + V+D Sbjct: 637 NSLVKKNPKKSFLDEVKKKIYSWSYNRGYIDFFYTRVFILGIRRLAELTHFFDKGVID 694
>NU5C_SORBI (Q33066) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) (Fragment) Length = 702 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Frame = -1 Query: 612 NLLVEFSSRDGEIESILKDISERAQGKG--NFSYSRFFAVGLFRLLELSNATEPTVLD 445 N LV+ + + ++ + K I + +G +F Y+R F +G+ RL EL++ + V+D Sbjct: 629 NSLVKKNPKKSFLDEVKKKIYSWSYNRGYIDFFYTRVFILGIRRLAELTHFFDKGVID 686 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,265,516 Number of Sequences: 219361 Number of extensions: 1729927 Number of successful extensions: 4802 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4790 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
