ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HA22I_ARATH (Q8LE10) HVA22-like protein i (AtHVA22i) 62 1e-09
2HA22J_ARATH (Q8GXE9) HVA22-like protein j (AtHVA22j) 59 7e-09
3HA22H_ARATH (Q8LEM6) HVA22-like protein h (AtHVA22h) 56 6e-08
4HA22G_ARATH (Q9LR09) Putative HVA22-like protein g (AtHVA22g) 54 4e-07
5ESR2_ANGJA (O13012) Estrogen receptor beta (ER-beta) 36 0.081
6REEP3_MOUSE (Q99KK1) Receptor expression-enhancing protein 3 30 5.8
7VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous... 29 9.9
8YOP1_EMENI (Q5BB01) Protein yop1 29 9.9

>HA22I_ARATH (Q8LE10) HVA22-like protein i (AtHVA22i)|
          Length = 296

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 28/69 (40%), Positives = 41/69 (59%)
 Frame = -1

Query: 545 LWYPQTRGSDIVYENFVRPLVMQYEPNIEERLRYLRANAGDLIVFYLKNFTDRGYELFLR 366
           LWYP+TRG+  VYE+F RP + Q+E +I+  L  LR  AGD+ V Y +     G    L 
Sbjct: 78  LWYPKTRGTTYVYESFFRPYLSQHENDIDHSLLELRTRAGDMAVIYWQRVASYGQTRILE 137

Query: 365 VLDFAQSQA 339
           +L +  +Q+
Sbjct: 138 ILQYVAAQS 146



to top

>HA22J_ARATH (Q8GXE9) HVA22-like protein j (AtHVA22j)|
          Length = 258

 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 24/69 (34%), Positives = 40/69 (57%)
 Frame = -1

Query: 545 LWYPQTRGSDIVYENFVRPLVMQYEPNIEERLRYLRANAGDLIVFYLKNFTDRGYELFLR 366
           LWYP+T+G+  VYE  ++P + Q+E  I+ ++  LRA A D  +FY  NF   G    ++
Sbjct: 78  LWYPKTKGTRHVYETLLKPYMAQHETEIDRKIMELRARAWDFFIFYFNNFAQAGQSTLIQ 137

Query: 365 VLDFAQSQA 339
              +  +Q+
Sbjct: 138 GFQYVLAQS 146



to top

>HA22H_ARATH (Q8LEM6) HVA22-like protein h (AtHVA22h)|
          Length = 315

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 26/69 (37%), Positives = 39/69 (56%)
 Frame = -1

Query: 545 LWYPQTRGSDIVYENFVRPLVMQYEPNIEERLRYLRANAGDLIVFYLKNFTDRGYELFLR 366
           LW+P+TRG+  VY++F +P V ++E  I+  L  LR  AGDL V Y +     G    + 
Sbjct: 78  LWFPKTRGTTYVYDSFFQPYVAKHENEIDRSLIELRTKAGDLAVIYCRKAVSYGQTRIVE 137

Query: 365 VLDFAQSQA 339
           +L F   Q+
Sbjct: 138 ILHFVALQS 146



to top

>HA22G_ARATH (Q9LR09) Putative HVA22-like protein g (AtHVA22g)|
          Length = 166

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 21/69 (30%), Positives = 41/69 (59%)
 Frame = -1

Query: 545 LWYPQTRGSDIVYENFVRPLVMQYEPNIEERLRYLRANAGDLIVFYLKNFTDRGYELFLR 366
           LW+P+T+G+  VY++F RP + ++E  I+  L  ++  A D+ + YL+   ++G   F  
Sbjct: 67  LWFPKTKGTTYVYDSFFRPYIAKHENEIDRNLVKVKTRAKDMAMIYLQKAINQGQTKFFE 126

Query: 365 VLDFAQSQA 339
           +L +   Q+
Sbjct: 127 ILQYITEQS 135



to top

>ESR2_ANGJA (O13012) Estrogen receptor beta (ER-beta)|
          Length = 573

 Score = 35.8 bits (81), Expect = 0.081
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -3

Query: 510 VRELRAAAGDAVRAQHRGEAAVPAGQRRRPHRLLPQELHRQGIRALPP 367
           +REL A  G   R Q RGE  VP  Q  +   L P++L  + I A PP
Sbjct: 259 IREL-AGTGGGARTQRRGEGVVPQTQEAQSSALTPEQLINRIIEAEPP 305



to top

>REEP3_MOUSE (Q99KK1) Receptor expression-enhancing protein 3|
          Length = 254

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 536 PQTRGSDIVYENFVRPLVMQYEPNIEERLRYLRANAGDLIVFYLKNFTDRGYE 378
           P TRG+ ++Y  F+ PL+   E  I++               Y+    +RGYE
Sbjct: 79  PYTRGASLIYRKFLHPLLSSKEREIDD---------------YIVQAKERGYE 116



to top

>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 435 QRRRPHRLLPQELHRQGIRALP 370
           Q   PH LLPQ+ H+Q +  LP
Sbjct: 303 QHHHPHLLLPQQHHQQAVAPLP 324



to top

>YOP1_EMENI (Q5BB01) Protein yop1|
          Length = 169

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -1

Query: 545 LWY--PQTRGSDIVYENFVRPLVMQY 474
           LW   PQT G+ IV+++ V+PLV +Y
Sbjct: 123 LWLALPQTNGAQIVFKSLVQPLVGRY 148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,539,938
Number of Sequences: 219361
Number of extensions: 1243883
Number of successful extensions: 3215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3215
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top