ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25j01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO8A_RABIT (P98136) Complement component C8 alpha chain precurso... 34 0.30
2CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor 30 7.5
3MODB_AZOVI (P37731) Molybdenum transport system permease protein... 29 9.8

>CO8A_RABIT (P98136) Complement component C8 alpha chain precursor (Complement|
           component 8 alpha subunit)
          Length = 585

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
 Frame = -3

Query: 187 CMHARTIESNMCI*CTYVIY*HR-VYMVRSFGG--------DTANCFVPFACIKPAATGQ 35
           C  +   E   C  C    Y HR +     FGG        D A+C+ P AC++PA  GQ
Sbjct: 39  CQLSSWSEWTDCFPCQDTKYRHRSLLQPNKFGGTICSGDIWDRASCYSPTACLRPAQCGQ 98

Query: 34  CIMC 23
              C
Sbjct: 99  DFQC 102



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>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 479 PRSWKGEAGACRASDDNQA 423
           P+ WKG+AG CR ++ ++A
Sbjct: 473 PKGWKGDAGECRCTEGDEA 491



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>MODB_AZOVI (P37731) Molybdenum transport system permease protein modB|
          Length = 226

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 491 AIGGLVYGNKVVEPAVAGWVHLVELGQHGPHG 586
           AIG +V    V+ P V G+  LV +G HGP G
Sbjct: 46  AIGAVVALPLVLPPTVLGFYLLVTMGPHGPIG 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,652,873
Number of Sequences: 219361
Number of extensions: 1378954
Number of successful extensions: 3443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3442
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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