ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25i22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetati... 32 0.71
2LEPA_SHEON (Q8EH83) GTP-binding protein lepA 32 0.93
3LEPA_PHOPR (Q6LMS0) GTP-binding protein lepA 31 1.6
4CSD_VIBCH (Q9KPQ7) Probable cysteine desulfurase (EC 2.8.1.7) 31 1.6
5LEPA_VIBPA (Q87LN7) GTP-binding protein lepA 30 3.5
6LEPA_BDEBA (P60930) GTP-binding protein lepA 29 7.8

>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein B)
          Length = 254

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 129 IKWRCHGAGYRRTRSQCSTGWWHRST 206
           + W CHGAGY+R   +  TG+  RS+
Sbjct: 14  VAWPCHGAGYQRFPLRMKTGYGERSS 39



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>LEPA_SHEON (Q8EH83) GTP-binding protein lepA|
          Length = 596

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -3

Query: 435 IAKDNNSDPVTGYVRISHQVYN-----VKEEYERLRDAVNKL 325
           +AK+    P+ G+ ++  QVY        +EYE  RDA+NKL
Sbjct: 276 LAKNGADKPLPGFKKVKPQVYAGVFPISTDEYENFRDALNKL 317



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>LEPA_PHOPR (Q6LMS0) GTP-binding protein lepA|
          Length = 597

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -3

Query: 432 AKDNNSDPVTGYVRISHQVYN-----VKEEYERLRDAVNKL 325
           AKD +  P+ G+ ++  QVY        ++YE  RDA+ KL
Sbjct: 277 AKDGSETPLPGFKKVKPQVYAGLFPISSDDYENFRDALGKL 317



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>CSD_VIBCH (Q9KPQ7) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 404

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = -3

Query: 408 VTGYVRISHQVYNVKEEYERLRDAVNKLV 322
           V G VRIS  VYN  EE ERL  A++K V
Sbjct: 373 VKGTVRISFGVYNSAEEVERLIAAIHKAV 401



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>LEPA_VIBPA (Q87LN7) GTP-binding protein lepA|
          Length = 597

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -3

Query: 435 IAKDNNSDPVTGYVRISHQVYN-----VKEEYERLRDAVNKL 325
           +AK+ +  P+ G+ ++  QVY        ++YE  RDA+ KL
Sbjct: 276 LAKNGSDKPLPGFKKVKPQVYAGLFPVSSDDYENFRDALGKL 317



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>LEPA_BDEBA (P60930) GTP-binding protein lepA|
          Length = 599

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -3

Query: 432 AKDNNSDPVTGYVRISHQVYN-----VKEEYERLRDAVNKL 325
           AK   + P+ G+ RI   V+      V  EYE L+DA++KL
Sbjct: 279 AKHPATQPLAGFQRIKPMVFAGIFPVVASEYENLKDALDKL 319


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,687,086
Number of Sequences: 219361
Number of extensions: 1360876
Number of successful extensions: 3747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3746
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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