>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal
           proliferator-activated receptor A-interacting complex
           320 kDa protein) (PPAR-alpha-interacting complex protein
           320 kDa)
          Length = 2885

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 32  SCSLTTHRSNSQLELQHHHKVLGHVSTGNLI*ILSNLC--HTSALSIANTQLSNLAGSLH 205
           SCS+    SNSQ    H+    GHVS  +L+   + L   HT      N  LS+ AGS  
Sbjct: 259 SCSV----SNSQQFPSHYSFSSGHVSPSSLLQSSAGLAPGHT------NQALSDFAGSNS 308

Query: 206 RNPHR 220
            +PHR
Sbjct: 309 FSPHR 313

>PE2R_RABIT (P80508) Prostaglandin-E(2) 9-reductase (EC 1.1.1.189)|
           (20-alpha-hydroxysteroid dehydrogenase) (EC 1.1.1.149)
           (20-alpha-HSD)
          Length = 323

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 307 LGSHREVEWRHRHPPVLLE 363
           LGSHRE EW  +  PVLLE
Sbjct: 219 LGSHREPEWVDQSAPVLLE 237

>NVL_HUMAN (O15381) Nuclear valosin-containing protein-like (Nuclear VCP-like|
           protein) (NVLp)
          Length = 856

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +2

Query: 95  LGHVSTGNLI*ILSNLCHTSALSIANTQLSNLAGSLHRNPHRQESPLPQCKTNGESGSEP 274
           L H++ G +   L  LC  +A+   N  L  L     +NP  ++ P    +     G+EP
Sbjct: 462 LAHLTPGFVGADLMALCREAAMCAVNRVLMKLQEQQKKNPEMEDLPSKGVQEE-RLGTEP 520

Query: 275 LMEAKDDM 298
             E +D++
Sbjct: 521 TSETQDEL 528

>POLS_EEVVM (P36331) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1254

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 146 HTSALSIANTQLSNLAGSLHRNPHRQESPLPQCKTNGESGSEPLMEAK 289
           H     + +T LS    S+H  P   +S L +C+  G   SE +  AK
Sbjct: 501 HLPGSEVDSTLLSTSGSSVHVTPPAGQSVLVECECGGTKISETINSAK 548


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,226,408
Number of Sequences: 219361
Number of extensions: 1239965
Number of successful extensions: 3650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3648
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)