ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25h20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IMPE2_DROME (P29681) 20-hydroxyecdysone protein precursor (20-HE) 32 1.2
2CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel al... 31 2.6
3INSM1_HUMAN (Q01101) Insulinoma-associated protein 1 (Zinc finge... 30 5.9
4TERE_ALCSP (P18782) Tellurium resistance protein terE 29 7.7
5OPRK_CAVPO (P41144) Kappa-type opioid receptor (KOR-1) 29 7.7
6MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma ... 29 10.0
7PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor t... 29 10.0
8FLII_BACSU (P23445) Flagellum-specific ATP synthase (EC 3.6.3.14) 29 10.0
9CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel ... 29 10.0
10SEN2_CHICK (Q5ZIN2) tRNA-splicing endonuclease subunit Sen2 (EC ... 29 10.0
11PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor typ... 29 10.0
12FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor 29 10.0

>IMPE2_DROME (P29681) 20-hydroxyecdysone protein precursor (20-HE)|
          Length = 466

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -1

Query: 528 NLGQSMLENIQVIESAFQQDRSQ----PGPMENFSNNILGGKGQVTATA 394
           NLG      +  +    QQ  S     PGP++ F NN+ GG    TA A
Sbjct: 309 NLGNQFQNTLSSLTGQQQQAVSTTPRPPGPIQQFVNNVFGGNNNATAAA 357



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>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 22/89 (24%), Positives = 30/89 (33%)
 Frame = -3

Query: 526  SWTKHAREYPGDRVSVSARSQPARPDGELLEQHPGWQRTGDRDGCSDRAPQDQQLAQRDV 347
            +W       PG        S+P + +     +H  W    +R    D AP+         
Sbjct: 863  AWPSSPERAPGREGPYGRESEPQQREHAPPREHVPWDADPERAKAGD-APRRH------- 914

Query: 346  SPSM*GVTTHRPSVHAQPRSTSANRWPGD 260
                    THRP    +PR   A R PGD
Sbjct: 915  --------THRPVAEGEPRRHRARRRPGD 935



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>INSM1_HUMAN (Q01101) Insulinoma-associated protein 1 (Zinc finger protein IA-1)|
          Length = 510

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 372 SCG-ARSEQPSRSPVLCHPGCCSRSSPSGRAGCDLAETLTRSPG 500
           SCG AR+E P+ SPV   PG      P+ RA   LA  L  +PG
Sbjct: 35  SCGGARAEPPAPSPV---PGPLPPPPPAERAHAALAAALACAPG 75



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>TERE_ALCSP (P18782) Tellurium resistance protein terE|
          Length = 191

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 454 PDGELLEQHPGWQRTGDRDGCSDRAPQDQQLAQRDVSPSM*GVTTHRPSVHAQ 296
           PDG +  QH G  RTG+ DG  ++   D      DV   +  VT H      Q
Sbjct: 69  PDGAV--QHQGDNRTGEGDGDDEQVKIDLTKVAADVKKLVFAVTIHEADSRKQ 119



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>OPRK_CAVPO (P41144) Kappa-type opioid receptor (KOR-1)|
          Length = 380

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
 Frame = -3

Query: 472 RSQPARPDGELLEQH-----------PGWQRTGDRDGCSDRAPQDQQLAQRDVSPSM 335
           R  PA+P  EL  ++           PGW    + DG     PQD+QL    +SP++
Sbjct: 5   RQGPAQPASELPARNACLLPNGSAWLPGW---AEPDGNGSAGPQDEQLEPAHISPAI 58



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>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)|
            (CDC42-binding protein kinase gamma) (Myotonic dystrophy
            kinase-related CDC42-binding kinase gamma) (Myotonic
            dystrophy protein kinase-like alpha) (MRCK gamma)
            (DMPK-like gamma
          Length = 1551

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = +2

Query: 275  IG*GRAGLGMDRRPVCGYTLH*RAYXXXXXXXXXXXXVRAAVAVTCPLPPRMLFEKFSIG 454
            +G GR GLG D    CGY  H                  A+ A  CP+PP +L     + 
Sbjct: 899  LGLGRQGLGCD---TCGYFCH---------------SACASQAPPCPVPPELLRTALGVH 940

Query: 455  P 457
            P
Sbjct: 941  P 941



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>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48)
          Length = 1692

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -1

Query: 324  PHTGRLSMPNPALPQPIDGLVITGSEVPR---PSCSPVLLR 211
            PH+G L  P+P  P P   L    +  PR   P  +PV +R
Sbjct: 1086 PHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIR 1126



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>FLII_BACSU (P23445) Flagellum-specific ATP synthase (EC 3.6.3.14)|
          Length = 440

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 47  PTDVNYCPVVVAATPRLIDRSSL---GTYVQCLN*LHDGLEWNDP 172
           PT   Y P V A  PRL++R+     GT       L DG + N+P
Sbjct: 277 PTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVDGDDMNEP 321



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>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
 Frame = -3

Query: 508  REYPGDRVSVSARSQPARPDGELLE-------QHPGWQRTGDRDGCSDRAPQDQQLAQRD 350
            R +PG       R  P   + EL +       +H  W    +R    D AP+        
Sbjct: 814  RAWPGSPERAPGREGPYGRESELQQREHAPPREHAPWDADTERAKAGD-APRRH------ 866

Query: 349  VSPSM*GVTTHRPSVHAQPRSTSANRWPGD 260
                     THRP    +PR   A R PGD
Sbjct: 867  ---------THRPVAEGEPRRHRARRRPGD 887



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>SEN2_CHICK (Q5ZIN2) tRNA-splicing endonuclease subunit Sen2 (EC 3.1.27.9)|
           (tRNA-intron endonuclease Sen2)
          Length = 461

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 420 HPGCCSRSSPSGRAGCDLAETLTRSPGYSRACFVQDS*MCP 542
           H GC ++ +P  R  C++A++  R+P Y      ++S +CP
Sbjct: 224 HCGCKAKGAPD-RESCNMAKSRERAPEYVLVQEEEESSLCP 263



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>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48) (His-domain-containing protein tyrosine
            phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14)
            (PTP-TD14) (Fragment)
          Length = 1499

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -1

Query: 324  PHTGRLSMPNPALPQPIDGLVITGSEVPR---PSCSPVLLR 211
            PH+G L  P+P  P P   L    +  PR   P  +PV +R
Sbjct: 893  PHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIR 933



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>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor|
          Length = 4010

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 11/120 (9%)
 Frame = +3

Query: 165 MIPMEPICTHGAAQRSAGAPVNRMAEAPRFLLSPGHRLAEVERGWAWTDGLCVVTPYIEG 344
           ++ +E  C      R+      + AE    + S    +  V  G  W +G C +    E 
Sbjct: 330 LVHLEGKCCPECISRNGYCIYEQKAET---MSSSAREIKHVPDGEKWEEGPCKLCECREA 386

Query: 345 -LTSR*ASC*SCGARSEQ--------PSRSPVLCHPGC--CSRSSPSGRAGCDLAETLTR 491
            +T    SC  C   +          P  +PV CHP C  CS S       CDL +  T+
Sbjct: 387 QVTCYEPSCPPCPVATLALVVKGQCCPDCTPVHCHPDCLTCSHSPDH----CDLCQDPTK 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,460,178
Number of Sequences: 219361
Number of extensions: 1939949
Number of successful extensions: 5372
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5365
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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