| Clone Name | rbaal25h20 |
|---|---|
| Clone Library Name | barley_pub |
>IMPE2_DROME (P29681) 20-hydroxyecdysone protein precursor (20-HE)| Length = 466 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Frame = -1 Query: 528 NLGQSMLENIQVIESAFQQDRSQ----PGPMENFSNNILGGKGQVTATA 394 NLG + + QQ S PGP++ F NN+ GG TA A Sbjct: 309 NLGNQFQNTLSSLTGQQQQAVSTTPRPPGPIQQFVNNVFGGNNNATAAA 357
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 30.8 bits (68), Expect = 2.6 Identities = 22/89 (24%), Positives = 30/89 (33%) Frame = -3 Query: 526 SWTKHAREYPGDRVSVSARSQPARPDGELLEQHPGWQRTGDRDGCSDRAPQDQQLAQRDV 347 +W PG S+P + + +H W +R D AP+ Sbjct: 863 AWPSSPERAPGREGPYGRESEPQQREHAPPREHVPWDADPERAKAGD-APRRH------- 914 Query: 346 SPSM*GVTTHRPSVHAQPRSTSANRWPGD 260 THRP +PR A R PGD Sbjct: 915 --------THRPVAEGEPRRHRARRRPGD 935
>INSM1_HUMAN (Q01101) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 510 Score = 29.6 bits (65), Expect = 5.9 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +3 Query: 372 SCG-ARSEQPSRSPVLCHPGCCSRSSPSGRAGCDLAETLTRSPG 500 SCG AR+E P+ SPV PG P+ RA LA L +PG Sbjct: 35 SCGGARAEPPAPSPV---PGPLPPPPPAERAHAALAAALACAPG 75
>TERE_ALCSP (P18782) Tellurium resistance protein terE| Length = 191 Score = 29.3 bits (64), Expect = 7.7 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -3 Query: 454 PDGELLEQHPGWQRTGDRDGCSDRAPQDQQLAQRDVSPSM*GVTTHRPSVHAQ 296 PDG + QH G RTG+ DG ++ D DV + VT H Q Sbjct: 69 PDGAV--QHQGDNRTGEGDGDDEQVKIDLTKVAADVKKLVFAVTIHEADSRKQ 119
>OPRK_CAVPO (P41144) Kappa-type opioid receptor (KOR-1)| Length = 380 Score = 29.3 bits (64), Expect = 7.7 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%) Frame = -3 Query: 472 RSQPARPDGELLEQH-----------PGWQRTGDRDGCSDRAPQDQQLAQRDVSPSM 335 R PA+P EL ++ PGW + DG PQD+QL +SP++ Sbjct: 5 RQGPAQPASELPARNACLLPNGSAWLPGW---AEPDGNGSAGPQDEQLEPAHISPAI 58
>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)| (CDC42-binding protein kinase gamma) (Myotonic dystrophy kinase-related CDC42-binding kinase gamma) (Myotonic dystrophy protein kinase-like alpha) (MRCK gamma) (DMPK-like gamma Length = 1551 Score = 28.9 bits (63), Expect = 10.0 Identities = 19/61 (31%), Positives = 24/61 (39%) Frame = +2 Query: 275 IG*GRAGLGMDRRPVCGYTLH*RAYXXXXXXXXXXXXVRAAVAVTCPLPPRMLFEKFSIG 454 +G GR GLG D CGY H A+ A CP+PP +L + Sbjct: 899 LGLGRQGLGCD---TCGYFCH---------------SACASQAPPCPVPPELLRTALGVH 940 Query: 455 P 457 P Sbjct: 941 P 941
>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) Length = 1692 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -1 Query: 324 PHTGRLSMPNPALPQPIDGLVITGSEVPR---PSCSPVLLR 211 PH+G L P+P P P L + PR P +PV +R Sbjct: 1086 PHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIR 1126
>FLII_BACSU (P23445) Flagellum-specific ATP synthase (EC 3.6.3.14)| Length = 440 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = +2 Query: 47 PTDVNYCPVVVAATPRLIDRSSL---GTYVQCLN*LHDGLEWNDP 172 PT Y P V A PRL++R+ GT L DG + N+P Sbjct: 277 PTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVDGDDMNEP 321
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 28.9 bits (63), Expect = 10.0 Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Frame = -3 Query: 508 REYPGDRVSVSARSQPARPDGELLE-------QHPGWQRTGDRDGCSDRAPQDQQLAQRD 350 R +PG R P + EL + +H W +R D AP+ Sbjct: 814 RAWPGSPERAPGREGPYGRESELQQREHAPPREHAPWDADTERAKAGD-APRRH------ 866 Query: 349 VSPSM*GVTTHRPSVHAQPRSTSANRWPGD 260 THRP +PR A R PGD Sbjct: 867 ---------THRPVAEGEPRRHRARRRPGD 887
>SEN2_CHICK (Q5ZIN2) tRNA-splicing endonuclease subunit Sen2 (EC 3.1.27.9)| (tRNA-intron endonuclease Sen2) Length = 461 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +3 Query: 420 HPGCCSRSSPSGRAGCDLAETLTRSPGYSRACFVQDS*MCP 542 H GC ++ +P R C++A++ R+P Y ++S +CP Sbjct: 224 HCGCKAKGAPD-RESCNMAKSRERAPEYVLVQEEEESSLCP 263
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -1 Query: 324 PHTGRLSMPNPALPQPIDGLVITGSEVPR---PSCSPVLLR 211 PH+G L P+P P P L + PR P +PV +R Sbjct: 893 PHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIR 933
>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor| Length = 4010 Score = 28.9 bits (63), Expect = 10.0 Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 11/120 (9%) Frame = +3 Query: 165 MIPMEPICTHGAAQRSAGAPVNRMAEAPRFLLSPGHRLAEVERGWAWTDGLCVVTPYIEG 344 ++ +E C R+ + AE + S + V G W +G C + E Sbjct: 330 LVHLEGKCCPECISRNGYCIYEQKAET---MSSSAREIKHVPDGEKWEEGPCKLCECREA 386 Query: 345 -LTSR*ASC*SCGARSEQ--------PSRSPVLCHPGC--CSRSSPSGRAGCDLAETLTR 491 +T SC C + P +PV CHP C CS S CDL + T+ Sbjct: 387 QVTCYEPSCPPCPVATLALVVKGQCCPDCTPVHCHPDCLTCSHSPDH----CDLCQDPTK 442 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,460,178 Number of Sequences: 219361 Number of extensions: 1939949 Number of successful extensions: 5372 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5091 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5365 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)