ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal25g17 |
|---|---|
| Clone Library Name | barley_pub |
>FMRA_CALPA (Q01133) Antho-RFamide neuropeptides precursor [Contains:| Antho-RFamide] Length = 334 Score = 31.2 bits (69), Expect = 1.1 Identities = 24/84 (28%), Positives = 37/84 (44%) Frame = +1 Query: 1 RDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCALDEAEESQVL 180 R GRE+ EQG R ED +G +E++ R E +G G D+ Sbjct: 163 RFGREEDQGRFGREEEQGRFGREEDQGRFGREEEQGRFGREEDQGRFGREEDQGR----- 217 Query: 181 GLGEQSELLQRGERDAELLRLGQQ 252 G + E + G+RD + R G++ Sbjct: 218 -FGREEEQGRFGKRDEDQGRFGKR 240
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +1 Query: 58 VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 228 +V +++RG G +E Q ++ G GC + + GL QS++L +RD Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399 Query: 229 ---ELLRLGQQ 252 L++L Q+ Sbjct: 1400 MQDNLIKLQQE 1410
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +1 Query: 58 VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 228 +V +++RG G +E Q ++ G GC + + GL QS++L +RD Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399 Query: 229 ---ELLRLGQQ 252 L++L Q+ Sbjct: 1400 MQHNLIKLQQE 1410
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +1 Query: 58 VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 228 +V +++RG G +E Q ++ G GC + + GL QS++L +RD Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399 Query: 229 ---ELLRLGQQ 252 L++L Q+ Sbjct: 1400 MQDNLIKLQQE 1410
>R4RL2_RAT (Q80WD1) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 30.4 bits (67), Expect = 1.9 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = +1 Query: 40 RYEQGGVVRHEDDR--GYGGDEQRQRQRCEHGRGHCGCALDEAEESQVLGLGEQSELL 207 R QGG EDD GYGG++QR Q C C VL G ++ LL Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQTCP----GAACQAPADSRGPVLSAGLRTPLL 410
>TRI55_RAT (Q5PQN5) Tripartite motif-containing 63 (Muscle-specific RING| finger protein 2) (MuRF2) (MURF-2) (RING finger protein 29) Length = 545 Score = 29.6 bits (65), Expect = 3.2 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = +1 Query: 7 GREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCALDEAEESQVLGL 186 G E +N ++ + ++R D DE + + E G G ++EAE QV Sbjct: 303 GYEIMNNFTVNLNREEKIIREIDFSREEEDEDDEGEVDEEGEGEDAVEVEEAENVQVASS 362 Query: 187 GEQSELLQRGERDAEL 234 GE+ E L++ +EL Sbjct: 363 GEE-ETLEKAAEPSEL 377
>R4RL2_MOUSE (Q7M6Z0) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +1 Query: 40 RYEQGGVVRHEDDR--GYGGDEQRQRQRC 120 R QGG EDD GYGG++QR Q C Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQTC 385
>R4RL2_HUMAN (Q86UN3) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +1 Query: 40 RYEQGGVVRHEDDR--GYGGDEQRQRQRC 120 R QGG EDD GYGG++QR Q C Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQMC 385
>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel| [Contains: Glutamic acid-rich protein (GARP); Cyclic-nucleotide-gated cation channel 4 (CNG channel 4) (CNG-4) (Cyclic nucleotide-gated cation channel modulatory subunit)] Length = 1394 Score = 28.9 bits (63), Expect = 5.5 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +1 Query: 4 DGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCALDEAEESQVLG 183 +GRE+ + ++ E+ G + E++ G DE+ + + E GRG E EE Sbjct: 389 EGREKEEEEG-EKKEEEGREKEEEEGGEKEDEEGREKEEEEGRG------KEEEEG---- 437 Query: 184 LGEQSELLQRGERDAE 231 GE+ E RG+ + E Sbjct: 438 -GEKEEEEGRGKEEVE 452
>ZN306_HUMAN (Q9BRR0) Zinc finger protein 306 (Zinc finger protein 47 homolog)| (Zfp-47) (Zf47) (Zinc finger and SCAN domain-containing protein 13) Length = 538 Score = 28.5 bits (62), Expect = 7.2 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 15/75 (20%) Frame = +1 Query: 49 QGGVVRHEDDRGYG-----GDEQRQRQRC----------EHGRGHCGCALDEAEESQVLG 183 QG + R E +G GDE++ + R EHG+ C D A+ Sbjct: 234 QGNLCRDEKQENHGSLVSLGDEKQTKSRDLPPAEELPEKEHGKISCHLREDIAQIPTCAE 293 Query: 184 LGEQSELLQRGERDA 228 GEQ LQR +++A Sbjct: 294 AGEQEGRLQRKQKNA 308
>RL32_PYRAB (Q9V1V2) 50S ribosomal protein L32e| Length = 130 Score = 28.5 bits (62), Expect = 7.2 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 10/69 (14%) Frame = -1 Query: 399 KNKVNKYDDGWSKQWFGAGIFAEGSEEASVDVFKKLEK-------RKVLSTV---EKAGL 250 K K GWS G+ G EE + K+LEK ++ TV ++ + Sbjct: 55 KGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKLDPKRQAARIAHTVGKKKRIEI 114 Query: 249 LSKAEELGV 223 L +A+ELG+ Sbjct: 115 LKRAQELGI 123
>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein| Length = 1259 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 293 SFLNTSTDASSLPSAKIPAPNHCLDHPSSYLFTLFL 400 S + S+ SS P+ PAP H HPS+ F L L Sbjct: 400 SLNSLSSSRSSTPAKTQPAPPHISHHPSASPFPLSL 435
>TRHY_SHEEP (P22793) Trichohyalin| Length = 1549 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/41 (34%), Positives = 26/41 (63%) Frame = +1 Query: 10 REQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGR 132 RE+R +R +Y + ++R E++R + ++Q QR+ CE R Sbjct: 789 REKRRQERERQYREEELLR-EEERLHRKEQQLQREECEKRR 828
>UBIH_ECOLI (P25534) 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)| Length = 392 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = +1 Query: 130 RGHCGCALDEAEESQVLGLGEQSELLQRGERDAELLR 240 RGH G AE+ Q+ LG+ EL G+R LLR Sbjct: 84 RGHAGFVTLAAEDYQLAALGQVVELHNVGQRLFALLR 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.141 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,251,641 Number of Sequences: 219361 Number of extensions: 590422 Number of successful extensions: 1771 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1702 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1758 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
