ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal25g10 |
|---|---|
| Clone Library Name | barley_pub |
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 199 bits (505), Expect = 5e-51 Identities = 95/95 (100%), Positives = 95/95 (100%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN Sbjct: 230 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 289 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ 249 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ Sbjct: 290 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ 324
>CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 321 Score = 120 bits (300), Expect = 3e-27 Identities = 59/93 (63%), Positives = 66/93 (70%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK L+SL +S F+EDWV+IG PAK KVQ E F DQCT EKEAVNVSL N Sbjct: 217 GIKGLMSLPADGSESTAFIEDWVKIGLPAKAKVQGEHVDKCFADQCTACEKEAVNVSLGN 276 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 255 LLTYPFV+EG+ TL L GGHYDFV+G FE W Sbjct: 277 LLTYPFVREGLVKKTLALKGGHYDFVNGGFELW 309
>CAH2_ARATH (P42737) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) Length = 259 Score = 117 bits (293), Expect = 2e-26 Identities = 57/94 (60%), Positives = 67/94 (71%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK L+S ++S F+EDWV+I PAK KV E S F+DQC E+EAVNVSL N Sbjct: 155 GIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCEREAVNVSLAN 214 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWE 252 LLTYPFV+EGV GTL L GG+YDFV+G FE WE Sbjct: 215 LLTYPFVREGVVKGTLALKGGYYDFVNGSFELWE 248
>CAHX_FLABR (P46511) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 114 bits (285), Expect = 2e-25 Identities = 54/93 (58%), Positives = 64/93 (68%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK L++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVSL N Sbjct: 226 GIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGN 285 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 255 LLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 286 LLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 329 Score = 114 bits (285), Expect = 2e-25 Identities = 54/93 (58%), Positives = 64/93 (68%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK L++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVSL N Sbjct: 225 GIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGN 284 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 255 LLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 285 LLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 317
>CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 113 bits (283), Expect = 3e-25 Identities = 54/93 (58%), Positives = 64/93 (68%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK L++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVSL N Sbjct: 226 GIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGN 285 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 255 LLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 286 LLTYPFVRDGLRNKTLALKGGHYDFVNGTFELW 318
>CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase| 1) Length = 330 Score = 113 bits (282), Expect = 4e-25 Identities = 54/93 (58%), Positives = 63/93 (67%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK L++ D S F+EDWV++ PAK KV E DDQC EKEAVNVSL N Sbjct: 226 GIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVQCEKEAVNVSLGN 285 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 255 LLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 286 LLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAHC_ARATH (P27140) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 347 Score = 112 bits (280), Expect = 6e-25 Identities = 54/93 (58%), Positives = 65/93 (69%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK L+S ++S F+EDWV+I PAK KV +E F+DQC E+EAVNVSL N Sbjct: 232 GIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLAN 291 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 255 LLTYPFV+EG+ GTL L GG+YDFV G FE W Sbjct: 292 LLTYPFVREGLVKGTLALKGGYYDFVKGAFELW 324
>CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) (Fragment) Length = 190 Score = 111 bits (277), Expect = 1e-24 Identities = 50/93 (53%), Positives = 64/93 (68%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK L+S+ D + F+E WV++G PAK KV+ C ++ F D CT EKEAVNVSL N Sbjct: 86 GIKGLMSIPDDGTPASDFIEQWVKLGLPAKSKVKANCNNLEFADLCTKCEKEAVNVSLGN 145 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 255 LLTYPFV++ + N L L G HYDFV+G F+ W Sbjct: 146 LLTYPFVRDALVNKKLSLKGAHYDFVNGAFDLW 178
>CAHC_PEA (P17067) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) [Contains: Carbonic anhydrase, 27 kDa isoform; Carbonic anhydrase, 25 kDa isoform] Length = 328 Score = 110 bits (276), Expect = 2e-24 Identities = 54/93 (58%), Positives = 63/93 (67%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK LLS S F+E+WV+IG PAK KV+ + PF + CT EKEAVN SL N Sbjct: 224 GIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGN 283 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 255 LLTYPFV+EG+ N TL L GG+YDFV G FE W Sbjct: 284 LLTYPFVREGLVNKTLALKGGYYDFVKGSFELW 316
>CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 319 Score = 110 bits (274), Expect = 3e-24 Identities = 53/93 (56%), Positives = 64/93 (68%) Frame = -1 Query: 533 GIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQN 354 GIK L+S D + F+EDWV+I PAK KV E + F +QCT EKEAVNVSL N Sbjct: 215 GIKGLMSFPDAGPTTTDFIEDWVKICLPAKHKVLAEHGNATFAEQCTHCEKEAVNVSLGN 274 Query: 353 LLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 255 LLTYPFV++G+ TL L GG+YDFV+G FE W Sbjct: 275 LLTYPFVRDGLVKKTLALQGGYYDFVNGSFELW 307
>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)| Length = 272 Score = 42.4 bits (98), Expect = 8e-04 Identities = 26/88 (29%), Positives = 42/88 (47%) Frame = -1 Query: 530 IKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNL 351 +K LL L +D V DW++ ++ V + DD +L E V ++NL Sbjct: 104 MKGLLKLNQLQED-MPLVYDWLQHAQATRRLVLDNYSGYETDDLVEILVAENVLTQIENL 162 Query: 350 LTYPFVKEGVTNGTLKLVGGHYDFVSGK 267 TYP V+ + G L++ G Y+ SG+ Sbjct: 163 KTYPIVRSRLFQGKLQIFGWIYEVESGE 190
>CYNT_HELPJ (Q9ZN54) Carbonic anhydrase (EC 4.2.1.1)| Length = 221 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = -1 Query: 482 FVEDWVRIGFPAKKKVQTECA-SMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTL 306 ++ +W++ P K++++ S F + + E+ + L NLL+Y F++E V N L Sbjct: 122 YIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQERVINNEL 181 Query: 305 KLVGGHYDFVSGK 267 K+ G HY +G+ Sbjct: 182 KIFGWHYIIETGR 194
>CYNT_HELPY (O24855) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 221 Score = 38.9 bits (89), Expect = 0.009 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -1 Query: 482 FVEDWVRIGFPAKKKVQTECA-SMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTL 306 ++ +W++ P K++++ S F + + E+ + L NLL+Y F++E + L Sbjct: 122 YIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNEL 181 Query: 305 KLVGGHYDFVSGK 267 K+ G HY +G+ Sbjct: 182 KIFGWHYIIETGR 194
>ACCD_PICAB (O47039) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 319 Score = 34.7 bits (78), Expect = 0.17 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = +3 Query: 168 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 347 AL+ + D+ L+YV + S TGG + F + GD ++ G ++D+ +G Sbjct: 220 ALYIPQKDNRLLYVSILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKIVIDQTLG 276 Query: 348 QEVLE 362 Q+V+E Sbjct: 277 QKVIE 281
>ACCD_PINTH (P52769) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 321 Score = 34.3 bits (77), Expect = 0.22 Identities = 17/65 (26%), Positives = 34/65 (52%) Frame = +3 Query: 168 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 347 AL+ H+ + L+Y+ + S TGG + F + GD ++ G ++++ +G Sbjct: 220 ALYIHQKEKKLLYISILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKRVIEQTLG 276 Query: 348 QEVLE 362 Q+V+E Sbjct: 277 QKVIE 281
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 30.0 bits (66), Expect = 4.2 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = +1 Query: 295 PTSLRVPLVTPSLTNG*VKRFWRDTLTA----SFSRTVHWSSKGMEAHSVCT 438 P L++P +T ++ +++W + LTA S +RT +W SK + H + T Sbjct: 390 PEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPT 441
>CYNT_ECOLI (P0ABE9) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 30.0 bits (66), Expect = 4.2 Identities = 21/81 (25%), Positives = 33/81 (40%) Frame = -1 Query: 494 DSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTN 315 D V W+R A+ + S + + +E V L NL T+P V+ + Sbjct: 114 DHMPAVSHWLRYADSARVVNEARPHS-DLPSKAAAMVRENVIAQLANLQTHPSVRLALEE 172 Query: 314 GTLKLVGGHYDFVSGKFETWE 252 G + L G YD SG ++ Sbjct: 173 GRIALHGWVYDIESGSIAAFD 193
>CYNT_ECO57 (P0ABF0) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 30.0 bits (66), Expect = 4.2 Identities = 21/81 (25%), Positives = 33/81 (40%) Frame = -1 Query: 494 DSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTN 315 D V W+R A+ + S + + +E V L NL T+P V+ + Sbjct: 114 DHMPAVSHWLRYADSARVVNEARPHS-DLPSKAAAMVRENVIAQLANLQTHPSVRLALEE 172 Query: 314 GTLKLVGGHYDFVSGKFETWE 252 G + L G YD SG ++ Sbjct: 173 GRIALHGWVYDIESGSIAAFD 193
>EF2_METKA (Q8TXJ4) Elongation factor 2 (EF-2) [Contains: Mka fusA intein]| Length = 1257 Score = 30.0 bits (66), Expect = 4.2 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 20/98 (20%) Frame = +3 Query: 174 HSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHT-------LL 332 H+ ++ +++ +L G ++ ELAGD++V+ DE+E G T ++ Sbjct: 545 HNFAAEGFVVHNTTLSDQLLAGAGMISE--ELAGDQLVLDFDEMEQERGITIDAANVSMV 602 Query: 333 DERVGQEVL------EGHVD-------GLLLQDGALVI 407 E G+E L GHVD + DGA+V+ Sbjct: 603 HEYEGEEYLINLIDTPGHVDFSGDVTRAMRAVDGAIVV 640
>PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 426 Score = 30.0 bits (66), Expect = 4.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 183 DVNAMPWECVPVIVQYWMPDGPM*ICHKQ 97 D A+PW +P I + PDGP+ I H + Sbjct: 154 DAPAVPWSTLPEIFRELSPDGPLTIFHPE 182
>CPXM2_HUMAN (Q8N436) Carboxypeptidase-like protein X2 precursor| Length = 756 Score = 29.6 bits (65), Expect = 5.5 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = +1 Query: 46 HSSTIPRQXNGEEKKVLLLMANSHRAIRHPVLDNNGYALPWHCIHID 186 H S +P + + +++ M HR I+ V D++G +P I ++ Sbjct: 618 HESQLPEEWENNRESLIVFMEQVHRGIKGLVRDSHGKGIPNAIISVE 664
>LPQT_MYCTU (P96384) Putative lipoprotein lpqT precursor| Length = 226 Score = 29.3 bits (64), Expect = 7.2 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -1 Query: 302 LVGGHYDFVSGKFETWEQ*IFPTG*LRHIQTYIYQDIVRSM 180 ++ G YD + TW + +FPTG Q Y+ Q + S+ Sbjct: 163 MIQGSYDLHGRRLHTWNRIVFPTGAPPAKQRYLVQLTITSL 203
>LPSBP_PERAM (P26305) Hemolymph lipopolysaccharide-binding protein precursor| (LPS-binding protein) (LPS-BP) Length = 256 Score = 29.3 bits (64), Expect = 7.2 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -1 Query: 392 VLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFET 258 ++ E + LQNL + EG TN +G H FV G+F T Sbjct: 157 IINSEDESKVLQNLFSKVTKTEGATNNDYIFIGIHDRFVEGEFIT 201
>ACCD_CHLVU (P56293) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 411 Score = 29.3 bits (64), Expect = 7.2 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +3 Query: 168 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 347 ALH H++ L+Y+ + S TGG + F + GD + L G G ++++ + Sbjct: 192 ALHIHQNCAKLLYISVLTSPTTGG---VTASFAMLGDLLFAEPKALIGFAGRRVIEQTLQ 248 Query: 348 QEV 356 +++ Sbjct: 249 EQL 251
>IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein precursor| (IRBP) (Interstitial retinol-binding protein) Length = 1247 Score = 28.9 bits (63), Expect = 9.3 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 7/43 (16%) Frame = +3 Query: 303 LEGSVGHTLLDERVGQEVLE-------GHVDGLLLQDGALVIE 410 LEG+VG+ +D GQEVL HV G L+ ALV++ Sbjct: 126 LEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMGTSALVLD 168
>RPOZ_VIBPA (Q87TB0) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 90 Score = 28.9 bits (63), Expect = 9.3 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +3 Query: 180 HRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADEL-EGSVGHTLLDERVGQEV 356 +R D +LI R TGG+D L+P E V+A E+ EG + +LD R QE Sbjct: 15 NRFDLVLIAARRARQMQTGGKDALVP--EENDKPTVIALREIEEGLITKEVLDARERQEQ 72 Query: 357 LE 362 E Sbjct: 73 QE 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,750,313 Number of Sequences: 219361 Number of extensions: 1505691 Number of successful extensions: 4956 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4796 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4954 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
