ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25f23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACON_SCHPO (O13966) Aconitate hydratase, mitochondrial precursor... 30 1.6
2PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase) 30 2.1
3I18BP_MOUSE (Q9Z0M9) Interleukin-18-binding protein precursor (I... 30 2.1
4SCAM4_HUMAN (Q969E2) Secretory carrier-associated membrane prote... 28 4.7
5ADRO_HUMAN (P22570) NADPH:adrenodoxin oxidoreductase, mitochondr... 28 6.2
6Y1728_HAEIN (O05087) Hypothetical protein HI1728 28 8.1

>ACON_SCHPO (O13966) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)|
           (Citrate hydro-lyase) (Aconitase)
          Length = 778

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 224 PVNSDIYKR-TYIKISSDRCECNAMGVRTRYCPVLDAGWPDVNLP 93
           PVN DI +  +Y+K+  DR  C     +      + AG P+V +P
Sbjct: 73  PVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVP 117



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>PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase)|
          Length = 426

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 172 DVNAMPWECVPVIAQYWMPDGPM*ICHKQ 86
           D  A+PW  +P I +   PDGP+ I H +
Sbjct: 154 DAPAVPWSTLPEIFRELSPDGPLTIFHPE 182



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>I18BP_MOUSE (Q9Z0M9) Interleukin-18-binding protein precursor (IL-18BP)|
           (Interferon gamma-inducing factor-binding protein)
          Length = 191

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 182 SSDRCECNAMGVRTRYCPVLDAGWPDVNLP*AIEPFFLHHFLTRNCTA 39
           S D C   +  V T+  P LD  WP+  +P       L+  LT +CTA
Sbjct: 41  SKDPCSSWSPAVPTKQYPALDVIWPEKEVP-------LNGTLTLSCTA 81



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>SCAM4_HUMAN (Q969E2) Secretory carrier-associated membrane protein 4 (Secretory|
           carrier membrane protein 4)
          Length = 229

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = +3

Query: 27  YASHSSTIPRQKMVKKKRFYCLWQIHIGPSGIQYWAITGTHSHGIAFTSIG-RYLDICTF 203
           Y + S  IP +  V  KR Y LW  +    G+   A       G + T+ G  ++ +  F
Sbjct: 22  YQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWIGGGSGTNFGLAFVWLLLF 81

Query: 204 VYVGVNRWGRXTAPMFR 254
              G   W R     FR
Sbjct: 82  TPCGYVCWFRPVYKAFR 98



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>ADRO_HUMAN (P22570) NADPH:adrenodoxin oxidoreductase, mitochondrial precursor|
           (EC 1.18.1.2) (Adrenodoxin reductase) (AR) (Ferredoxin
           reductase) (Ferredoxin--NADP(+) reductase)
          Length = 491

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 119 AGWPDVNLP*A-IEPFFLHHFLTRNCTAM*CII 24
           + WP   LP A   P F HHF T+  T   C++
Sbjct: 12  SAWPRTRLPPAGSTPSFCHHFSTQEKTPQICVV 44



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>Y1728_HAEIN (O05087) Hypothetical protein HI1728|
          Length = 397

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 117 GIQYWAITGTHSHGIAFTSIGRYLDICTFVYVGVNRW 227
           G+  WA + T   G A+TS+     +C  +    NRW
Sbjct: 274 GVVIWAASVTSVIGAAYTSVSFLTTLCPTIERNRNRW 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,957,354
Number of Sequences: 219361
Number of extensions: 791704
Number of successful extensions: 2259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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