ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25f20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009602.1| Triticum aestivum clone wre1n.pk0080.f8:fis, full... 759 0.0
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
3dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
4dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
5dbj|AK106976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
6gb|AC069540.6| Homo sapiens chromosome 10 clone RP11-344L13, com... 44 0.49
7ref|NM_112728.2| Arabidopsis thaliana calcium ion binding AT3G18... 42 1.9
8ref|XM_533013.2| PREDICTED: Canis familiaris similar to Transcri... 42 1.9
9gb|AE004159.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 42 1.9
10gb|AY091287.1| Arabidopsis thaliana unknown protein (At3g18430) ... 42 1.9
11gb|AY063789.1| Arabidopsis thaliana unknown protein (At3g18430) ... 42 1.9
12gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, comp... 42 1.9
13emb|BX825707.1|CNS0A51F Arabidopsis thaliana Full-length cDNA Co... 42 1.9
14gb|AY087152.1| Arabidopsis thaliana clone 32274 mRNA, complete s... 42 1.9
15dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.9
16emb|AL132800.4|CNS01DTM Human chromosome 14 DNA sequence BAC R-8... 42 1.9
17gb|AC161474.4| Pan troglodytes BAC clone CH251-488B17 from chrom... 40 7.7
18ref|XM_612660.2| PREDICTED: Bos taurus similar to Transcription ... 40 7.7
19gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, com... 40 7.7
20gb|AC146002.2| Pan troglodytes BAC clone RP43-153B17 from 7, com... 40 7.7
21gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complet... 40 7.7
22emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chr... 40 7.7
23gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, comp... 40 7.7
24gb|AC011353.5| Homo sapiens chromosome 5 clone CTC-328A6, comple... 40 7.7
25gb|U39674.1| Caenorhabditis elegans cosmid C06E2, complete sequence 40 7.7
26gb|AC083813.29| Homo sapiens 12q BAC RP11-304C10 (Roswell Park C... 40 7.7
27gb|AC009708.11| Homo sapiens chromosome 8, clone RP11-318G5, com... 40 7.7
28gb|DQ027001.1| Homo sapiens ribonucleotide reductase M2 B (TP53 ... 40 7.7
29gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complet... 40 7.7
30dbj|AP004925.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 7.7
31gb|AC156638.2| Mus musculus BAC clone RP24-255L24 from chromosom... 40 7.7
32dbj|AP002907.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.7
33emb|AL670680.6| Mouse DNA sequence from clone RP23-314D24 on chr... 40 7.7 
>gb|BT009602.1| Triticum aestivum clone wre1n.pk0080.f8:fis, full insert mRNA
           sequence
          Length = 899

 Score =  759 bits (383), Expect = 0.0
 Identities = 518/563 (92%), Gaps = 11/563 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctacatcgncactgcattaattaatcctctcaaaaacagnaagnnnnnnntgatta 60
           |||||||||| | |||||||||||||||||| ||| ||||||| |||        || ||
Sbjct: 813 cactctacattgacactgcattaattaatcccctcgaaaacagaaagaaaaaag-gacta 755

                                                                       
Query: 61  aactggcactgcatgcattcgggcatgcatgtggacaggtacacaagnaactcaaaacaa 120
           ||||||||||||||    ||||||||| ||| ||||||||||||||| ||||||||||| 
Sbjct: 754 aactggcactgcat----tcgggcatgtatgcggacaggtacacaag-aactcaaaacag 700

                                                                       
Query: 121 tgagctcccattccattctgtcgcacgttctactggctatggacacttgttttcatcaga 180
           ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| | ||
Sbjct: 699 tgagctcccattctattctgtcgcacgctctattggctatggacacttgttttcagctga 640

                                                                       
Query: 181 catgactgagagcttgctgcatcctcatctgctgaaatctgcattctcccttcactagtc 240
           ||     ||||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 639 ca-----gagagcttgctgcatccccatctgctgaaatctgcatccgcccttcactagtc 585

                                                                       
Query: 241 gatgggcacttccacctccattttcaggccagggtggtcgatgatcgtcacaaaatcttc 300
           ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||
Sbjct: 584 gatgggcacttccacctccatcttcaggccagtgtggccgatgatcgtcacaaaatcttc 525

                                                                       
Query: 301 taatgatagagtggaatcccgtgtgtacccagcttcttccaacacctttgttagtacttg 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 524 taatgatagagtggaatcccgtgtatacccagcttcttccaacacctttgttagtacttg 465

                                                                       
Query: 361 ctctctttgttgctctgacatggatgagcccgttaggtcccgtaaaacctctaccaggtc 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctctctttgtttctctgacatggatgagcccgttaggtcccgtaaaacctctaccaggtc 405

                                                                       
Query: 421 cttgaagcttactttccccttgccatcaatgtcatacaccttaaacatcaactcaatctt 480
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 404 cttgaagcttactttccccttgccatcaatgtcatacaccttaaatatgaactcaatctt 345

                                                                       
Query: 481 ttgctgaaagctggcccttgtgctgaaggtagagagaaacgaaacaaattccttgaagtt 540
           |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 344 ttgctgaaggctggcccttgcgctgaaggtagagagaaaagaaacaaattccttgaagtt 285

                                  
Query: 541 caatccatcaaccatacgtagca 563
           |||||||||||||||||||||||
Sbjct: 284 caatccatcaaccatacgtagca 262
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                            
Query: 361      ctctctttgttgctctgacatggatgagcccgttaggtcccgtaaaacctctaccaggtc 420
                ||||||||||| ||||| |||| |||| || ||| ||||||| |||||||||||||||||
Sbjct: 34226789 ctctctttgttcctctgtcatgaatgaccctgtttggtcccgcaaaacctctaccaggtc 34226848

                                                          
Query: 421      cttgaagcttactttccccttgccatcaatgtcatacacctt 462
                 |||||| |||| |||||||||||||||||||||||||||||
Sbjct: 34226849 tttgaaggttaccttccccttgccatcaatgtcatacacctt 34226890



 Score =  109 bits (55), Expect = 1e-20
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                            
Query: 471      actcaatcttttgctgaaagctggcccttgtgctgaaggtagagagaaacgaaacaaatt 530
                |||||||||||||||||| ||||||| |||  |||||||||||||| || |||||||| |
Sbjct: 34227017 actcaatcttttgctgaacgctggcctttgcactgaaggtagagaggaaggaaacaaaat 34227076

                                                   
Query: 531      ccttgaagttcaatccatcaaccatacgtagcaac 565
                ||||||||||||  |||||||||||||| ||||||
Sbjct: 34227077 ccttgaagttcagcccatcaaccatacgcagcaac 34227111



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 233      cactagtcgatgggcacttccacctccattttcaggccagg 273
                |||||||| || ||||||||||||||||| || ||||||||
Sbjct: 34225791 cactagtcaataggcacttccacctccatctttaggccagg 34225831



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                            
Query: 292      aaaatcttctaatgatagagtggaatcccgtgtgtacccagcttcttccaacacctttgt 351
                ||||||||| || || || ||| |||||| |||||| |||||||||||||  || |||||
Sbjct: 34226004 aaaatcttccaaagaaagcgtgcaatcccttgtgtatccagcttcttccagtacatttgt 34226063

                       
Query: 352      tagtact 358
                || ||||
Sbjct: 34226064 tattact 34226070
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>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0032L17
          Length = 165808

 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                          
Query: 361    ctctctttgttgctctgacatggatgagcccgttaggtcccgtaaaacctctaccaggtc 420
              ||||||||||| ||||| |||| |||| || ||| ||||||| |||||||||||||||||
Sbjct: 154303 ctctctttgttcctctgtcatgaatgaccctgtttggtcccgcaaaacctctaccaggtc 154362

                                                        
Query: 421    cttgaagcttactttccccttgccatcaatgtcatacacctt 462
               |||||| |||| |||||||||||||||||||||||||||||
Sbjct: 154363 tttgaaggttaccttccccttgccatcaatgtcatacacctt 154404



 Score =  109 bits (55), Expect = 1e-20
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                          
Query: 471    actcaatcttttgctgaaagctggcccttgtgctgaaggtagagagaaacgaaacaaatt 530
              |||||||||||||||||| ||||||| |||  |||||||||||||| || |||||||| |
Sbjct: 154531 actcaatcttttgctgaacgctggcctttgcactgaaggtagagaggaaggaaacaaaat 154590

                                                 
Query: 531    ccttgaagttcaatccatcaaccatacgtagcaac 565
              ||||||||||||  |||||||||||||| ||||||
Sbjct: 154591 ccttgaagttcagcccatcaaccatacgcagcaac 154625



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 233    cactagtcgatgggcacttccacctccattttcaggccagg 273
              |||||||| || ||||||||||||||||| || ||||||||
Sbjct: 153305 cactagtcaataggcacttccacctccatctttaggccagg 153345



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                          
Query: 292    aaaatcttctaatgatagagtggaatcccgtgtgtacccagcttcttccaacacctttgt 351
              ||||||||| || || || ||| |||||| |||||| |||||||||||||  || |||||
Sbjct: 153518 aaaatcttccaaagaaagcgtgcaatcccttgtgtatccagcttcttccagtacatttgt 153577

                     
Query: 352    tagtact 358
              || ||||
Sbjct: 153578 tattact 153584
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>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0689B12
          Length = 154745

 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                         
Query: 361   ctctctttgttgctctgacatggatgagcccgttaggtcccgtaaaacctctaccaggtc 420
             ||||||||||| ||||| |||| |||| || ||| ||||||| |||||||||||||||||
Sbjct: 62062 ctctctttgttcctctgtcatgaatgaccctgtttggtcccgcaaaacctctaccaggtc 62121

                                                       
Query: 421   cttgaagcttactttccccttgccatcaatgtcatacacctt 462
              |||||| |||| |||||||||||||||||||||||||||||
Sbjct: 62122 tttgaaggttaccttccccttgccatcaatgtcatacacctt 62163



 Score =  109 bits (55), Expect = 1e-20
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                         
Query: 471   actcaatcttttgctgaaagctggcccttgtgctgaaggtagagagaaacgaaacaaatt 530
             |||||||||||||||||| ||||||| |||  |||||||||||||| || |||||||| |
Sbjct: 62290 actcaatcttttgctgaacgctggcctttgcactgaaggtagagaggaaggaaacaaaat 62349

                                                
Query: 531   ccttgaagttcaatccatcaaccatacgtagcaac 565
             ||||||||||||  |||||||||||||| ||||||
Sbjct: 62350 ccttgaagttcagcccatcaaccatacgcagcaac 62384



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 233   cactagtcgatgggcacttccacctccattttcaggccagg 273
             |||||||| || ||||||||||||||||| || ||||||||
Sbjct: 61064 cactagtcaataggcacttccacctccatctttaggccagg 61104



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 292   aaaatcttctaatgatagagtggaatcccgtgtgtacccagcttcttccaacacctttgt 351
             ||||||||| || || || ||| |||||| |||||| |||||||||||||  || |||||
Sbjct: 61277 aaaatcttccaaagaaagcgtgcaatcccttgtgtatccagcttcttccagtacatttgt 61336

                    
Query: 352   tagtact 358
             || ||||
Sbjct: 61337 tattact 61343
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>dbj|AK106976.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H02, full
            insert sequence
          Length = 2604

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                        
Query: 233  cactagtcgatgggcacttccacctccattttcaggccagggtggtcgatgatcgtcaca 292
            |||||||| || ||||||||||||||||| || |||||||| || || || ||| |   |
Sbjct: 2359 cactagtcaataggcacttccacctccatctttaggccaggatgatctataatcctggta 2300

                                                                        
Query: 293  aaatcttctaatgatagagtggaatcccgtgtgtacccagcttcttccaacacctttgtt 352
            |||||||| || || || ||| |||||| |||||| |||||||||||||  || ||||||
Sbjct: 2299 aaatcttccaaagaaagcgtgcaatcccttgtgtatccagcttcttccagtacatttgtt 2240

                                     
Query: 353  agtacttgctctctttgttgctctg 377
            | |||| |||||||||||| |||||
Sbjct: 2239 attactcgctctctttgttcctctg 2215
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>gb|AC069540.6| Homo sapiens chromosome 10 clone RP11-344L13, complete sequence
          Length = 201182

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 119    aatgagctcccattccattctg 140
              ||||||||||||||||||||||
Sbjct: 182679 aatgagctcccattccattctg 182658
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>ref|NM_112728.2| Arabidopsis thaliana calcium ion binding AT3G18430 mRNA, complete
           cds
          Length = 784

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 523 aacaaattccttgaagttcaatccatcaaccat 555
           |||||| ||||| |||||||| |||||||||||
Sbjct: 340 aacaaaatccttaaagttcaaaccatcaaccat 308
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>ref|XM_533013.2| PREDICTED: Canis familiaris similar to Transcription intermediary
            factor 1-gamma (TIF1-gamma) (RET-fused gene 7 protein)
            (Rfg7 protein) (Tripartite motif protein 33) (LOC475804),
            mRNA
          Length = 3750

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 194  ttgctgcatcctcatctgctg 214
            |||||||||||||||||||||
Sbjct: 1632 ttgctgcatcctcatctgctg 1612
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>gb|AE004159.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 67
            of 251 of the complete chromosome
          Length = 13190

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 535  gaagttcaatccatcaaccatacgtagca 563
            |||||||| | ||||||||||||||||||
Sbjct: 7805 gaagttcagtgcatcaaccatacgtagca 7833
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>gb|AY091287.1| Arabidopsis thaliana unknown protein (At3g18430) mRNA, complete cds
          Length = 559

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 523 aacaaattccttgaagttcaatccatcaaccat 555
           |||||| ||||| |||||||| |||||||||||
Sbjct: 240 aacaaaatccttaaagttcaaaccatcaaccat 208
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>gb|AY063789.1| Arabidopsis thaliana unknown protein (At3g18430) mRNA, complete cds
          Length = 730

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 523 aacaaattccttgaagttcaatccatcaaccat 555
           |||||| ||||| |||||||| |||||||||||
Sbjct: 335 aacaaaatccttaaagttcaaaccatcaaccat 303
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>gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, complete sequence
          Length = 191786

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 356    acttgctctctttgttgctct 376
              |||||||||||||||||||||
Sbjct: 126921 acttgctctctttgttgctct 126901
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>emb|BX825707.1|CNS0A51F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL58ZB04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 693

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 523 aacaaattccttgaagttcaatccatcaaccat 555
           |||||| ||||| |||||||| |||||||||||
Sbjct: 305 aacaaaatccttaaagttcaaaccatcaaccat 273
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>gb|AY087152.1| Arabidopsis thaliana clone 32274 mRNA, complete sequence
          Length = 776

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 523 aacaaattccttgaagttcaatccatcaaccat 555
           |||||| ||||| |||||||| |||||||||||
Sbjct: 340 aacaaaatccttaaagttcaaaccatcaaccat 308
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>dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24
          Length = 88989

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 523   aacaaattccttgaagttcaatccatcaaccat 555
             |||||| ||||| |||||||| |||||||||||
Sbjct: 44710 aacaaaatccttaaagttcaaaccatcaaccat 44678
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>emb|AL132800.4|CNS01DTM Human chromosome 14 DNA sequence BAC R-80A15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185251

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   atctgcattctcccttcacta 237
             |||||||||||||||||||||
Sbjct: 35132 atctgcattctcccttcacta 35112
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>gb|AC161474.4| Pan troglodytes BAC clone CH251-488B17 from chromosome 7, complete
              sequence
          Length = 191529

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    gtgtacccagcttcttccaa 342
              ||||||||||||||||||||
Sbjct: 152768 gtgtacccagcttcttccaa 152749
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>ref|XM_612660.2| PREDICTED: Bos taurus similar to Transcription intermediary factor
            1-gamma (TIF1-gamma) (RET-fused gene 7 protein) (Rfg7
            protein) (Tripartite motif protein 33) (LOC533296), mRNA
          Length = 4076

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  tgctgcatcctcatctgctg 214
            ||||||||||||||||||||
Sbjct: 1982 tgctgcatcctcatctgctg 1963
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>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence
          Length = 172617

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   cttgctctctttgttgctct 376
             ||||||||||||||||||||
Sbjct: 41610 cttgctctctttgttgctct 41629
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>gb|AC146002.2| Pan troglodytes BAC clone RP43-153B17 from 7, complete sequence
          Length = 169542

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    gtgtacccagcttcttccaa 342
              ||||||||||||||||||||
Sbjct: 131481 gtgtacccagcttcttccaa 131462
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>gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complete sequence
          Length = 144165

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    gtgtacccagcttcttccaa 342
              ||||||||||||||||||||
Sbjct: 137130 gtgtacccagcttcttccaa 137149
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>emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chromosome 9 Contains two
             novel genes and three putative novel pseudogenes, complete
             sequence
          Length = 189319

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 527   aattccttgaagttcaatcc 546
             ||||||||||||||||||||
Sbjct: 85464 aattccttgaagttcaatcc 85445
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>gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, complete sequence
          Length = 176916

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    cttgctctctttgttgctct 376
              ||||||||||||||||||||
Sbjct: 163809 cttgctctctttgttgctct 163790
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>gb|AC011353.5| Homo sapiens chromosome 5 clone CTC-328A6, complete sequence
          Length = 143527

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   acaatgagctcccattccat 136
             ||||||||||||||||||||
Sbjct: 13626 acaatgagctcccattccat 13645
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>gb|U39674.1| Caenorhabditis elegans cosmid C06E2, complete sequence
          Length = 47743

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   gtggtcgatgatcgtcacaa 293
             ||||||||||||||||||||
Sbjct: 43063 gtggtcgatgatcgtcacaa 43044
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>gb|AC083813.29| Homo sapiens 12q BAC RP11-304C10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 216123

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 209    ctgctgaaatctgcattctcccttcact 236
              |||||||||| |||||||||||| ||||
Sbjct: 116416 ctgctgaaatttgcattctccctccact 116443
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>gb|AC009708.11| Homo sapiens chromosome 8, clone RP11-318G5, complete sequence
          Length = 220215

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   atgtcatacaccttaaacat 468
             ||||||||||||||||||||
Sbjct: 71671 atgtcatacaccttaaacat 71652
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>gb|DQ027001.1| Homo sapiens ribonucleotide reductase M2 B (TP53 inducible) (RRM2B)
             gene, complete cds
          Length = 37983

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   atgtcatacaccttaaacat 468
             ||||||||||||||||||||
Sbjct: 14527 atgtcatacaccttaaacat 14508
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>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence
          Length = 182776

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 209   ctgctgaaatctgcattctcccttcact 236
             |||||||||| |||||||||||| ||||
Sbjct: 38141 ctgctgaaatttgcattctccctccact 38168
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>dbj|AP004925.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13P22, TM0079b,
             complete sequence
          Length = 33290

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   atgggcacttccacctccattttc 265
             |||| |||||||||||||||||||
Sbjct: 18942 atggccacttccacctccattttc 18965
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>gb|AC156638.2| Mus musculus BAC clone RP24-255L24 from chromosome 9, complete sequence
          Length = 162792

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    tgcatgcattcgggcatgcatgtg 93
             |||||||||||| |||||||||||
Sbjct: 39160 tgcatgcattcgtgcatgcatgtg 39183
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>dbj|AP002907.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB431C1
          Length = 98146

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   atgtcatacaccttaaacat 468
             ||||||||||||||||||||
Sbjct: 47927 atgtcatacaccttaaacat 47946
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>emb|AL670680.6| Mouse DNA sequence from clone RP23-314D24 on chromosome 4, complete
              sequence
          Length = 150897

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 172    ttcatcagacatgactgagagcttgctg 199
              |||| |||||||||||| ||||||||||
Sbjct: 142652 ttcagcagacatgactgtgagcttgctg 142625


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,944,697
Number of Sequences: 3902068
Number of extensions: 4944697
Number of successful extensions: 89933
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89844
Number of HSP's gapped (non-prelim): 87
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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