ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THIM_SHIFL (Q83KH2) Hydroxyethylthiazole kinase (EC 2.7.1.50) (4... 30 2.0
2THIM_ECOLI (P76423) Hydroxyethylthiazole kinase (EC 2.7.1.50) (4... 29 2.6
3THIM_ECO57 (Q8X7G3) Hydroxyethylthiazole kinase (EC 2.7.1.50) (4... 29 2.6
4PGM2_MOUSE (Q7TSV4) Phosphoglucomutase-2 (EC 5.4.2.2) (Glucose p... 28 7.6
5RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore... 27 10.0
6ASP1_ORYSA (Q6YNY7) Aspartic proteinase Asp1 precursor (EC 3.4.2... 27 10.0
7SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor 27 10.0

>THIM_SHIFL (Q83KH2) Hydroxyethylthiazole kinase (EC 2.7.1.50)|
           (4-methyl-5-beta-hydroxyethylthiazole kinase) (Thz
           kinase) (TH kinase)
          Length = 262

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 20/78 (25%), Positives = 30/78 (38%)
 Frame = +3

Query: 6   PXLHWTTNIMYKSKVNNTKQLLGEYPQVGHRPKXXXXXXXXXXXNLYPLQTISHLTHQKM 185
           P +H  TN + ++   NT   LG  P +    +            L  + T++    Q M
Sbjct: 23  PLVHCMTNDVVQTFTANTLLALGASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAM 82

Query: 186 HGWVSAAKSPEIMWTSIP 239
              V  AKS +  WT  P
Sbjct: 83  RAAVEQAKSSQTRWTLDP 100



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>THIM_ECOLI (P76423) Hydroxyethylthiazole kinase (EC 2.7.1.50)|
           (4-methyl-5-beta-hydroxyethylthiazole kinase) (Thz
           kinase) (TH kinase)
          Length = 262

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/78 (25%), Positives = 30/78 (38%)
 Frame = +3

Query: 6   PXLHWTTNIMYKSKVNNTKQLLGEYPQVGHRPKXXXXXXXXXXXNLYPLQTISHLTHQKM 185
           P +H  TN + ++   NT   LG  P +    +            L  + T++    Q M
Sbjct: 23  PLVHCMTNDVVQTFTANTLLALGASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAM 82

Query: 186 HGWVSAAKSPEIMWTSIP 239
              V  AKS +  WT  P
Sbjct: 83  RAAVEQAKSSQTPWTLDP 100



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>THIM_ECO57 (Q8X7G3) Hydroxyethylthiazole kinase (EC 2.7.1.50)|
           (4-methyl-5-beta-hydroxyethylthiazole kinase) (Thz
           kinase) (TH kinase)
          Length = 262

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/78 (25%), Positives = 30/78 (38%)
 Frame = +3

Query: 6   PXLHWTTNIMYKSKVNNTKQLLGEYPQVGHRPKXXXXXXXXXXXNLYPLQTISHLTHQKM 185
           P +H  TN + ++   NT   LG  P +    +            L  + T++    Q M
Sbjct: 23  PLVHCMTNDVVQTFTANTLLALGASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAM 82

Query: 186 HGWVSAAKSPEIMWTSIP 239
              V  AKS +  WT  P
Sbjct: 83  RAAVEQAKSSQTPWTLDP 100



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>PGM2_MOUSE (Q7TSV4) Phosphoglucomutase-2 (EC 5.4.2.2) (Glucose phosphomutase|
           2) (PGM 2)
          Length = 620

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 136 LTSTHFRPYPISHTKRCMGGYLLQNH 213
           +T T F PY +SH K C G  +  +H
Sbjct: 149 ITPTPFVPYTVSHLKLCAGIMITASH 174



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>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex|
           protein Nup358) (Nucleoporin Nup358) (358 kDa
           nucleoporin) (P270)
          Length = 3224

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 140 PLPTSDHIPSHTPKDAWVGICCKITRDYVDIDSC*PPGNLARLPLL 277
           PLP    + +   K  W  +C  I R  V       PGN+A+L LL
Sbjct: 516 PLPVCKQLCTERQKSWWDAVCTLIHRKAV-------PGNVAKLRLL 554



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>ASP1_ORYSA (Q6YNY7) Aspartic proteinase Asp1 precursor (EC 3.4.23.-) (OsAsp1)|
           (Nucellin-like protein)
          Length = 410

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -1

Query: 257 DYPVVSRNRCPHNLW*FCSRYPPMHLLVCEMGYGLKWVEVRVAYLV*LSADFRSVTYLGI 78
           DYP ++ N+ PH L      Y P      E+ Y +K  E R A L    AD R     G 
Sbjct: 67  DYPCINCNKVPHGL------YKP------ELKYAVKCTEQRCADLY---ADLRKPMKCGP 111

Query: 77  FPE*LFGVVHLG 42
             +  +G+ ++G
Sbjct: 112 KNQCHYGIQYVG 123



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>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor|
          Length = 307

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 62  TITRGISPGRSQT*NQPIITLNKPL*PLPTSDHIPSHTP 178
           T T   +P   Q+  QP  T +KP  P  T+  +P  TP
Sbjct: 50  TTTTTCAPPTQQSTTQPPCTTSKPTTPKQTTTQLPCTTP 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,092,031
Number of Sequences: 219361
Number of extensions: 1070334
Number of successful extensions: 1955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1955
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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