>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  165 bits (418), Expect(2) = 1e-59
 Identities = 81/82 (98%), Positives = 81/82 (98%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKWVGSTGIENIGKR VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT
Sbjct: 346 EVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 405

Query: 353 YMSQAALGDANQDAMKTGSFYG 288
           YMSQAALGDANQDAMKTGSFYG
Sbjct: 406 YMSQAALGDANQDAMKTGSFYG 427



 Score = 84.0 bits (206), Expect(2) = 1e-59
 Identities = 37/38 (97%), Positives = 37/38 (97%)
 Frame = -2

Query: 240 GKGAQQGTLPVPXGCTDQNAKNYDPTARSDDGSCLYTF 127
           GKGAQQGTLPVP GCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  128 bits (321), Expect(2) = 1e-42
 Identities = 59/82 (71%), Positives = 71/82 (86%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKWV   G++ IGK+ VNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD 
Sbjct: 356 EVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADK 415

Query: 353 YMSQAALGDANQDAMKTGSFYG 288
           YMS+AALGDAN DA+K G+FYG
Sbjct: 416 YMSEAALGDANNDAIKRGTFYG 437



 Score = 64.3 bits (155), Expect(2) = 1e-42
 Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
 Frame = -2

Query: 243 GGKGAQQ-GTLPVPXGCTDQNAKNYDPTARSDDGSCLYTF 127
           GG+ AQQ G +PVP GCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  129 bits (324), Expect(2) = 2e-42
 Identities = 58/82 (70%), Positives = 73/82 (89%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKWV S G++N+GK+ VNS+DGP  FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD 
Sbjct: 354 EVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQ 413

Query: 353 YMSQAALGDANQDAMKTGSFYG 288
           YMS AALGDAN+DA+  G+F+G
Sbjct: 414 YMSSAALGDANKDAIDRGTFFG 435



 Score = 62.8 bits (151), Expect(2) = 2e-42
 Identities = 28/36 (77%), Positives = 29/36 (80%)
 Frame = -2

Query: 240 GKGAQQGTLPVPXGCTDQNAKNYDPTARSDDGSCLY 133
           GK AQQ +LPV  GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  124 bits (312), Expect(2) = 7e-42
 Identities = 60/82 (73%), Positives = 71/82 (86%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRK+V S G+E IGKR VNSR+GP  FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+T
Sbjct: 356 EVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAET 415

Query: 353 YMSQAALGDANQDAMKTGSFYG 288
           Y+SQAALGDAN DA+  G+FYG
Sbjct: 416 YLSQAALGDANADAIGRGTFYG 437



 Score = 65.5 bits (158), Expect(2) = 7e-42
 Identities = 28/38 (73%), Positives = 32/38 (84%)
 Frame = -2

Query: 240 GKGAQQGTLPVPXGCTDQNAKNYDPTARSDDGSCLYTF 127
           GKGAQQ  LPVP GCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  141 bits (355), Expect = 1e-33
 Identities = 65/82 (79%), Positives = 74/82 (90%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKWVG  G+ENI KR VNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD 
Sbjct: 343 EVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADK 402

Query: 353 YMSQAALGDANQDAMKTGSFYG 288
           Y+S+AALG AN DAMKTG+FYG
Sbjct: 403 YLSEAALGQANDDAMKTGAFYG 424

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  140 bits (353), Expect = 2e-33
 Identities = 65/82 (79%), Positives = 75/82 (91%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKWV  TG+ENIGKR VNSR+GP  FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ 
Sbjct: 346 EVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQ 405

Query: 353 YMSQAALGDANQDAMKTGSFYG 288
           Y+S+AALGDAN DAMKTGSFYG
Sbjct: 406 YLSEAALGDANSDAMKTGSFYG 427

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  134 bits (338), Expect = 1e-31
 Identities = 61/82 (74%), Positives = 74/82 (90%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKW+   G+++IGK+ VNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD 
Sbjct: 356 EVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 415

Query: 353 YMSQAALGDANQDAMKTGSFYG 288
           Y+S+AALGDAN DAM TG+FYG
Sbjct: 416 YLSEAALGDANSDAMNTGTFYG 437

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  132 bits (332), Expect = 6e-31
 Identities = 59/81 (72%), Positives = 74/81 (91%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVR+WV  TG+ENI ++ VNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD 
Sbjct: 352 EVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADK 411

Query: 353 YMSQAALGDANQDAMKTGSFY 291
           Y+++AALG+AN+DAMKTGSF+
Sbjct: 412 YLNEAALGEANEDAMKTGSFF 432

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  128 bits (321), Expect = 1e-29
 Identities = 58/80 (72%), Positives = 72/80 (90%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKWV   G++ IGK+ VNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD 
Sbjct: 356 EVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADK 415

Query: 353 YMSQAALGDANQDAMKTGSF 294
           YMS+AALGDANQDA+K G+F
Sbjct: 416 YMSEAALGDANQDAIKRGTF 435

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  127 bits (318), Expect = 3e-29
 Identities = 61/80 (76%), Positives = 70/80 (87%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKWV  TGIE IG + +NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+T
Sbjct: 360 EVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAET 419

Query: 353 YMSQAALGDANQDAMKTGSF 294
           Y+ +AALGDAN DA+ TG+F
Sbjct: 420 YLKEAALGDANADAINTGNF 439

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  127 bits (318), Expect = 3e-29
 Identities = 60/81 (74%), Positives = 69/81 (85%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKWV  TGIE IG + +NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD 
Sbjct: 360 EVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 419

Query: 353 YMSQAALGDANQDAMKTGSFY 291
           Y+ +AALGDAN DA+  GSF+
Sbjct: 420 YLKEAALGDANADAINNGSFF 440

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  126 bits (317), Expect = 3e-29
 Identities = 60/78 (76%), Positives = 70/78 (89%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKWV  TGIE IG++ +NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+T
Sbjct: 355 EVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAET 414

Query: 353 YMSQAALGDANQDAMKTG 300
           Y+ +AALGDAN DA+ TG
Sbjct: 415 YLKEAALGDANADAINTG 432

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  120 bits (301), Expect = 2e-27
 Identities = 52/81 (64%), Positives = 73/81 (90%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKW+   G++  GK+ VNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD 
Sbjct: 358 EVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADK 417

Query: 353 YMSQAALGDANQDAMKTGSFY 291
           Y+++AALG+AN+DA+K+GSF+
Sbjct: 418 YLNEAALGNANEDAIKSGSFF 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  119 bits (299), Expect = 4e-27
 Identities = 52/81 (64%), Positives = 72/81 (88%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           EVRKW+   G++++GK+ VNS++GP TF+QPKMT++KLL Y  MLVQEQ+NVKRVQLAD 
Sbjct: 360 EVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQ 419

Query: 353 YMSQAALGDANQDAMKTGSFY 291
           Y+++AALG+AN+DA+K+GSF+
Sbjct: 420 YLNEAALGNANEDAIKSGSFF 440

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 38/57 (66%), Positives = 47/57 (82%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 363
           EVRKW    G+E IG+  VNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 353 EVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 32/66 (48%), Positives = 45/66 (68%)
 Frame = -3

Query: 530 VRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 351
           VR+W+  TG++ IG++ VN+R   V   +  M +  L++YG  LV EQ+NVKRVQLAD Y
Sbjct: 330 VRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAY 388

Query: 350 MSQAAL 333
           +S A L
Sbjct: 389 LSGAEL 394

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 22/61 (36%), Positives = 36/61 (59%)
 Frame = -3

Query: 533 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 354
           ++R ++   G EN+  R VNS +GP  F++P  T+  L+E  + +V EQ  ++  QL D 
Sbjct: 229 QIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDE 288

Query: 353 Y 351
           Y
Sbjct: 289 Y 289

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = -3

Query: 458 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 303
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 302 GSFYG*KILHTHPPSLAA 249
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -3

Query: 470 RDGPVTFEQPKMTVEK 423
           R+GP TFEQP MT+EK
Sbjct: 17  REGPPTFEQPAMTIEK 32

>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
          Length = 464

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -3

Query: 458 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 303
           VTF    +T E K +E  H  +QE         NVK + + D      A    N  A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337

Query: 302 GSFYG*KILHTHPPSLAA 249
             F    I+  HP  ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 355 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 459
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = -3

Query: 458 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 303
           VTF    +T E K +E  H  + E         NVK V + D      A    N   M+ 
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337

Query: 302 GSFYG*KILHTHPPSLAA 249
           GSF    I+  HP  + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355

>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 300 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPXGCTDQNAKNYDPTARSDDGS 142
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80

>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)|
           (EF-1AO1)
          Length = 461

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -3

Query: 458 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 303
           VTF    +T E K +E  H  + E         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 302 GSFYG*KILHTHPPSLAA 249
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,518,781
Number of Sequences: 219361
Number of extensions: 1392569
Number of successful extensions: 3753
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3750
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)