ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal25f05 |
|---|---|
| Clone Library Name | barley_pub |
>LTI6A_ORYSA (Q8H5T6) Hydrophobic protein LTI6A (Low temperature-induced protein| 6A) Length = 56 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/23 (100%), Positives = 23/23 (100%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVITK 220 ICLLLTFFGYLPGIIYAVWVITK Sbjct: 34 ICLLLTFFGYLPGIIYAVWVITK 56
>LTI6B_ORYSA (Q6AT93) Hydrophobic protein LTI6B (Low temperature-induced protein| 6B) Length = 55 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/23 (78%), Positives = 21/23 (91%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVITK 220 ICLLLTF GY+PGIIYA++ ITK Sbjct: 33 ICLLLTFLGYIPGIIYAIYAITK 55
>RCI2B_ARATH (Q9ZNS6) Hydrophobic protein RCI2B (Low temperature and| salt-responsive protein LTI6B) Length = 54 Score = 43.5 bits (101), Expect = 1e-04 Identities = 17/23 (73%), Positives = 22/23 (95%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVITK 220 ICL+LT FGYLPGI+YA+++ITK Sbjct: 32 ICLILTLFGYLPGILYALYIITK 54
>RCI2A_ARATH (Q9ZNQ7) Hydrophobic protein RCI2A (Low temperature and| salt-responsive protein LTI6A) Length = 54 Score = 41.2 bits (95), Expect = 7e-04 Identities = 16/23 (69%), Positives = 21/23 (91%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVITK 220 ICL+LT GY+PGIIYA++V+TK Sbjct: 32 ICLVLTLLGYIPGIIYAIYVLTK 54
>RC21_ARATH (Q9FE70) Hypothetical UPF0057 protein At1g57550| Length = 52 Score = 39.7 bits (91), Expect = 0.002 Identities = 14/23 (60%), Positives = 21/23 (91%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVITK 220 +CLLLT F ++PG+IYA++V+TK Sbjct: 30 VCLLLTLFAFIPGLIYAIYVLTK 52
>LT02_HORVU (Q9ARD5) Low temperature-induced protein lt101.2| Length = 54 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 ICLLLT GY+PGIIYAV+V+ Sbjct: 32 ICLLLTLLGYIPGIIYAVYVL 52
>LT01_HORVU (P68179) Low temperature-induced protein lt101.1 (Blt101)| (Blt101.1) Length = 54 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 ICLLLT GY+PGIIYAV+V+ Sbjct: 32 ICLLLTILGYIPGIIYAVYVL 52
>ESI3_LOPEL (P68178) Salt stress-induced hydrophobic peptide ESI3| Length = 54 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 ICLLLT GY+PGIIYAV+V+ Sbjct: 32 ICLLLTILGYIPGIIYAVYVL 52
>OSR8_ORYSA (Q9LRI7) Hydrophobic protein OSR8| Length = 72 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 ICLLLT GY+PGIIYAV+V+ Sbjct: 36 ICLLLTILGYVPGIIYAVYVL 56
>RC24_ARATH (Q9SUI0) Hypothetical UPF0057 protein At4g30660| Length = 74 Score = 37.7 bits (86), Expect = 0.008 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 ICL+LT GY+PGIIYA++VI Sbjct: 35 ICLVLTILGYVPGIIYAIYVI 55
>RC23_ARATH (Q9M095) Hypothetical UPF0057 protein At4g30650| Length = 73 Score = 37.4 bits (85), Expect = 0.010 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 ICL+LT GY+PGIIYA++VI Sbjct: 35 ICLVLTILGYIPGIIYALYVI 55
>YCU3_CAEEL (Q22700) Hypothetical UPF0057 protein T23F2.3 in chromosome X| Length = 57 Score = 37.0 bits (84), Expect = 0.013 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 IC+LLT GY+PGIIYA +VI Sbjct: 34 ICILLTILGYIPGIIYACYVI 54
>RC22_ARATH (O82232) Hypothetical UPF0057 protein At2g24040| Length = 75 Score = 37.0 bits (84), Expect = 0.013 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 ICL+LT GYLPGIIYA++ I Sbjct: 35 ICLILTCLGYLPGIIYAIYAI 55
>YCU4_CAEEL (Q22701) Hypothetical UPF0057 protein T23F2.4 in chromosome X| Length = 57 Score = 36.6 bits (83), Expect = 0.017 Identities = 14/21 (66%), Positives = 18/21 (85%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 IC+LLT GY+PGIIYA ++I Sbjct: 34 ICILLTILGYIPGIIYACYII 54
>YQAE_ECOLI (P0AE42) Hypothetical UPF0057 protein yqaE| Length = 52 Score = 33.1 bits (74), Expect = 0.19 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVITK 220 I +LLT GY+PG+I+A WV T+ Sbjct: 29 INILLTLLGYIPGLIHAFWVQTR 51
>YQAE_ECOL6 (P0AE43) Hypothetical UPF0057 protein yqaE| Length = 52 Score = 33.1 bits (74), Expect = 0.19 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVITK 220 I +LLT GY+PG+I+A WV T+ Sbjct: 29 INILLTLLGYIPGLIHAFWVQTR 51
>YQAE_ECO57 (P0AE44) Hypothetical UPF0057 protein yqaE| Length = 52 Score = 33.1 bits (74), Expect = 0.19 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVITK 220 I +LLT GY+PG+I+A WV T+ Sbjct: 29 INILLTLLGYIPGLIHAFWVQTR 51
>Y567_PSEAE (Q9I5W9) Hypothetical UPF0057 protein PA0567| Length = 52 Score = 33.1 bits (74), Expect = 0.19 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = -3 Query: 282 LLLTFFGYLPGIIYAVWVITK 220 +LLT GY+PGI++AV++I K Sbjct: 31 ILLTLLGYIPGIVHAVYIIAK 51
>RIC1_PHYIN (Q9Y068) Protein Ric1| Length = 57 Score = 30.8 bits (68), Expect = 0.92 Identities = 11/20 (55%), Positives = 17/20 (85%) Frame = -3 Query: 279 LLTFFGYLPGIIYAVWVITK 220 LLT GY+PG+I+AV+++ K Sbjct: 37 LLTVLGYIPGVIHAVYILIK 56
>YCU5_CAEEL (Q22702) Hypothetical UPF0057 protein T23F2.5 in chromosome X| Length = 57 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/21 (61%), Positives = 17/21 (80%) Frame = -3 Query: 288 ICLLLTFFGYLPGIIYAVWVI 226 I +LLT GY+PGII+A +VI Sbjct: 34 INILLTILGYIPGIIHACYVI 54
>SNA4_YEAST (Q07549) Protein SNA4| Length = 140 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -3 Query: 282 LLLTFFGYLPGIIYAVWVITK*PPL 208 +LLT G+LPG+++A + IT PL Sbjct: 42 VLLTLLGFLPGMLHAFYYITITSPL 66
>SYA_PSEU2 (Q4ZQI4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 874 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -2 Query: 229 HHQVAAPACLLVSR*SHGQLVPFVRDASQVTHGAAYALCVHAVVHPV 89 HH V A L V Q+ VRDA+++ H A + L HA + V Sbjct: 531 HHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL--HAALRQV 575
>SYA_PSE14 (Q48G25) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 874 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -2 Query: 229 HHQVAAPACLLVSR*SHGQLVPFVRDASQVTHGAAYALCVHAVVHPV 89 HH V A L V Q+ VRDA+++ H A + L HA + V Sbjct: 531 HHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL--HAALRQV 575
>CRCB_BORPE (Q7VYU0) Protein crcB homolog| Length = 128 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%) Frame = +3 Query: 135 WVTW-LASRTNGTSWPWDHLETSRQAG 212 W+ W L R NG WPW L + G Sbjct: 21 WLRWVLGLRLNGAGWPWGTLTANLVGG 47
>CRCB_BORBR (Q7WHD3) Protein crcB homolog| Length = 128 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%) Frame = +3 Query: 135 WVTW-LASRTNGTSWPWDHLETSRQAG 212 W+ W L R NG WPW L + G Sbjct: 21 WLRWVLGLRLNGAGWPWGTLTANLVGG 47
>YAIT_ECOLI (P77199) Hypothetical protein yaiT precursor| Length = 968 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 96 CTTA*THNAYAAPWVTWLASRTNGTSWPWDHLE 194 CT A T A AA + TW T+ WDH++ Sbjct: 17 CTLAITSQANAANYDTWTYIDNPVTALDWDHMD 49
>HMDH1_DICDI (P34135) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC| 1.1.1.34) (HMG-CoA reductase 1) Length = 552 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -3 Query: 138 PMVLRTRCVFMLLYILFVVPCLMIRLLSLPVTFP 37 P L T+ +F ++YIL ++P + +++S+ FP Sbjct: 5 PPNLETKELFWIIYILILIPKVFAKVMSVRELFP 38 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,351,565 Number of Sequences: 219361 Number of extensions: 574971 Number of successful extensions: 1714 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1714 length of database: 80,573,946 effective HSP length: 72 effective length of database: 64,779,954 effective search space used: 1554718896 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
