ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479247.1| Oryza sativa (japonica cultivar-group), mRNA 131 1e-27
2gb|AY554050.1| Oryza sativa (japonica cultivar-group) drought-in... 131 1e-27
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 131 1e-27
4dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic D... 131 1e-27
5dbj|AK121089.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 1e-27
6gb|AY607689.1| Oryza sativa (japonica cultivar-group) low temper... 131 1e-27
7gb|AY823549.1| Pennisetum glaucum low temperature and salt respo... 115 8e-23
8gb|AY103848.1| Zea mays PCO061754 mRNA sequence 113 3e-22
9gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome... 90 5e-15
10gb|AY554051.1| Oryza sativa (japonica cultivar-group) drought-in... 90 5e-15
11gb|AF503583.2| Oryza sativa (indica cultivar-group) early drough... 90 5e-15
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
13dbj|AK119249.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 5e-15
14dbj|AK070577.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 5e-15
15gb|AY607690.1| Oryza sativa (japonica cultivar-group) low temper... 90 5e-15
16dbj|AK099873.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
17gb|DQ078765.1| Zea mays clone Zmcoi6.8 cold-inducible unknown mRNA 78 2e-11
18gb|AY111401.1| Zea mays CL37957_1 mRNA sequence 78 2e-11
19ref|NM_184595.1| Oryza sativa (japonica cultivar-group), mRNA 66 7e-08
20gb|BT017793.1| Zea mays clone EL01N0504G08.c mRNA sequence 66 7e-08
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 7e-08
22gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... 66 7e-08
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 7e-08
24gb|AY177890.1| Zea mays clone BAC ZMBBb_95H21 ABA-induced gene, ... 66 7e-08
25gb|AY107179.1| Zea mays PCO146860 mRNA sequence 66 7e-08
26dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
27dbj|AP002070.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
28dbj|AK058343.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
29ref|NM_183567.1| Oryza sativa (japonica cultivar-group), predic... 60 4e-06
30gb|AY131234.1| Triticum aestivum putative low temperature and sa... 60 4e-06
31gb|AY105302.1| Zea mays PCO074610 mRNA sequence 58 2e-05
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 6e-05
33dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 56 6e-05
34dbj|AK121018.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
35gb|BT019258.1| Zea mays clone Contig931.F mRNA sequence 52 0.001
36gb|AY108684.1| Zea mays PCO116945 mRNA sequence 52 0.001
37ref|NM_183563.1| Oryza sativa (japonica cultivar-group), predic... 50 0.004
38dbj|AB161676.1| Leymus chinensis AcPMP3-1 mRNA for plasma membra... 50 0.004
39dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
40dbj|AK108564.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.24
41ref|XM_475521.1| Oryza sativa (japonica cultivar-group), predic... 42 0.96
42gb|AC155713.14| Mus musculus 10 BAC RP24-117K18 (Roswell Park Ca... 42 0.96
43gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, co... 42 0.96
44gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome... 42 0.96
45gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome... 42 0.96
46gb|AC153920.5| Mus musculus 10 BAC RP23-82M21 (Roswell Park Canc... 42 0.96
47gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.96
48gb|AC152958.1| Mus musculus 6 BAC RP23-301K21 (Roswell Park Canc... 40 3.8
49gb|AC126031.2| Mus musculus BAC clone RP24-84F17 from chromosome... 40 3.8
50gb|AC122188.4| Mus musculus BAC clone RP23-33B7 from chromosome ... 40 3.8
51ref|XM_545943.2| PREDICTED: Canis familiaris similar to otopetri... 40 3.8
52gb|AC144399.2| Oryctolagus cuniculus clone LBNL1-125D4, complete... 40 3.8
53emb|AL512504.9| Human DNA sequence from clone RP11-325E14 on chr... 40 3.8
54emb|AL353679.18| Human DNA sequence from clone RP3-418C23 on chr... 40 3.8
55gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, com... 40 3.8
56emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 o... 40 3.8
57emb|AL117528.1|HSM801052 Homo sapiens genomic DNA; cDNA DKFZp434... 40 3.8
58gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, c... 40 3.8
59gb|AC019031.7| Homo sapiens chromosome 8, clone RP11-563O19, com... 40 3.8
60gb|AC025212.5|AC025212 Homo sapiens chromosome 18, clone RP11-28... 40 3.8
61gb|AC090023.20| Homo sapiens 12 BAC RP11-221N13 (Roswell Park Ca... 40 3.8
62gb|AF293359.1|AF293359 Homo sapiens desmocollin 3 (DSC3) gene, c... 40 3.8
63gb|AC117440.5| Homo sapiens 3 BAC RP11-575C1 (Roswell Park Cance... 40 3.8
64gb|AC132605.3| Mus musculus BAC clone RP24-90M10 from chromosome... 40 3.8
65ref|XM_316287.2| Anopheles gambiae str. PEST ENSANGP00000020503 ... 40 3.8
66gb|AC114406.11| Mus musculus chromosome 14, clone RP23-8P18, com... 40 3.8
67gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 3.8
68gb|AC140410.3| Mus musculus BAC clone RP23-141J11 from 10, compl... 40 3.8
69emb|AL732572.10| Mouse DNA sequence from clone RP23-32C16 on chr... 40 3.8 
>ref|XM_479247.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 171

 Score =  131 bits (66), Expect = 1e-27
 Identities = 72/74 (97%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ctacttggtgatgacccagacagcgtagatgatgccggggaggtagccgaagaaggtgag 112

                         
Query: 277 cagcaggcagatcc 290
           ||||| ||||||||
Sbjct: 111 cagcaagcagatcc 98
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>gb|AY554050.1| Oryza sativa (japonica cultivar-group) drought-induced hydrophobic
           protein (DRR1) mRNA, complete cds
          Length = 571

 Score =  131 bits (66), Expect = 1e-27
 Identities = 72/74 (97%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctacttggtgatgacccagacagcgtagatgatgccggggaggtagccgaagaaggtgag 214

                         
Query: 277 cagcaggcagatcc 290
           ||||| ||||||||
Sbjct: 213 cagcaagcagatcc 200
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  131 bits (66), Expect = 1e-27
 Identities = 72/74 (97%)
 Strand = Plus / Minus

                                                                            
Query: 217      ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 26350505 ctacttggtgatgacccagacagcgtagatgatgccggggaggtagccgaagaaggtgag 26350446

                              
Query: 277      cagcaggcagatcc 290
                ||||| ||||||||
Sbjct: 26350445 cagcaagcagatcc 26350432
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>dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1136_D11
          Length = 109399

 Score =  131 bits (66), Expect = 1e-27
 Identities = 72/74 (97%)
 Strand = Plus / Minus

                                                                        
Query: 217  ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4745 ctacttggtgatgacccagacagcgtagatgatgccggggaggtagccgaagaaggtgag 4686

                          
Query: 277  cagcaggcagatcc 290
            ||||| ||||||||
Sbjct: 4685 cagcaagcagatcc 4672
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>dbj|AK121089.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065L15, full
           insert sequence
          Length = 636

 Score =  131 bits (66), Expect = 1e-27
 Identities = 72/74 (97%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctacttggtgatgacccagacagcgtagatgatgccggggaggtagccgaagaaggtgag 239

                         
Query: 277 cagcaggcagatcc 290
           ||||| ||||||||
Sbjct: 238 cagcaagcagatcc 225
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>gb|AY607689.1| Oryza sativa (japonica cultivar-group) low temperature-induced low
           molecular weight integral membrane protein LTI6a mRNA,
           complete cds
          Length = 616

 Score =  131 bits (66), Expect = 1e-27
 Identities = 72/74 (97%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctacttggtgatgacccagacagcgtagatgatgccggggaggtagccgaagaaggtgag 224

                         
Query: 277 cagcaggcagatcc 290
           ||||| ||||||||
Sbjct: 223 cagcaagcagatcc 210
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>gb|AY823549.1| Pennisetum glaucum low temperature and salt responsive protein
           mRNA, complete cds
          Length = 565

 Score =  115 bits (58), Expect = 8e-23
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctacttggtgatggcccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 249

                         
Query: 277 cagcaggcagatcc 290
            |  ||||||||||
Sbjct: 248 gacgaggcagatcc 235
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>gb|AY103848.1| Zea mays PCO061754 mRNA sequence
          Length = 846

 Score =  113 bits (57), Expect = 3e-22
 Identities = 72/77 (93%)
 Strand = Plus / Minus

                                                                       
Query: 214 cggctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggt 273
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 312 cggctacttggtgatggcccagacggcgtagatgatgccggggaggtagccgaggaaggt 253

                            
Query: 274 gagcagcaggcagatcc 290
           ||| |  ||||||||||
Sbjct: 252 gaggataaggcagatcc 236
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>gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0069I13, complete sequence
          Length = 94252

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                         
Query: 218   tacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagc 277
             |||||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 29011 tacttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgagc 29070

                          
Query: 278   agcaggcagatcc 290
             | |||||||||||
Sbjct: 29071 aacaggcagatcc 29083
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>gb|AY554051.1| Oryza sativa (japonica cultivar-group) drought-induced hydrophobic
           protein (DRR2) mRNA, complete cds
          Length = 547

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 218 tacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagc 277
           |||||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 287 tacttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgagc 228

                        
Query: 278 agcaggcagatcc 290
           | |||||||||||
Sbjct: 227 aacaggcagatcc 215
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>gb|AF503583.2| Oryza sativa (indica cultivar-group) early drought induced protein
           (R1G1B) mRNA, complete cds
          Length = 649

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 218 tacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagc 277
           |||||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 312 tacttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgagc 253

                        
Query: 278 agcaggcagatcc 290
           | |||||||||||
Sbjct: 252 aacaggcagatcc 240
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                           
Query: 218     tacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagc 277
               |||||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 2159782 tacttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgagc 2159841

                            
Query: 278     agcaggcagatcc 290
               | |||||||||||
Sbjct: 2159842 aacaggcagatcc 2159854



 Score = 42.1 bits (21), Expect = 0.96
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                            
Query: 239     gcgtagatgatgccggggaggtagccgaagaaggtgagcagcagg 283
               ||||||||||||||||| | ||| || | || |||||||||||||
Sbjct: 1186261 gcgtagatgatgccgggtaagtatcccaggatggtgagcagcagg 1186305
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>dbj|AK119249.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G07, full
           insert sequence
          Length = 622

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 218 tacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagc 277
           |||||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 315 tacttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgagc 256

                        
Query: 278 agcaggcagatcc 290
           | |||||||||||
Sbjct: 255 aacaggcagatcc 243
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>dbj|AK070577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057O07, full
           insert sequence
          Length = 1507

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 218 tacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagc 277
           |||||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 437 tacttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgagc 378

                        
Query: 278 agcaggcagatcc 290
           | |||||||||||
Sbjct: 377 aacaggcagatcc 365
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>gb|AY607690.1| Oryza sativa (japonica cultivar-group) low temperature-induced low
           molecular weight integral membrane protein LTI6b mRNA,
           complete cds
          Length = 630

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 218 tacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagc 277
           |||||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 294 tacttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgagc 235

                        
Query: 278 agcaggcagatcc 290
           | |||||||||||
Sbjct: 234 aacaggcagatcc 222
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>dbj|AK099873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G21, full
           insert sequence
          Length = 1039

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                       
Query: 218 tacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagc 277
           |||||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 440 tacttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgagc 381

                        
Query: 278 agcaggcagatcc 290
           | || ||||||||
Sbjct: 380 aacaagcagatcc 368
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>gb|DQ078765.1| Zea mays clone Zmcoi6.8 cold-inducible unknown mRNA
          Length = 220

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                       
Query: 220 cttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagcag 279
           |||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||| ||
Sbjct: 92  cttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgaggag 33

                      
Query: 280 caggcagatcc 290
            ||||||||||
Sbjct: 32  gaggcagatcc 22
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>gb|AY111401.1| Zea mays CL37957_1 mRNA sequence
          Length = 478

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                       
Query: 220 cttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagcag 279
           |||||||||| |  ||| |||||||||||||||||||| |||||||| ||||||||| ||
Sbjct: 234 cttggtgatggcgtagatggcgtagatgatgccggggatgtagccgaggaaggtgaggag 293

                      
Query: 280 caggcagatcc 290
            ||||||||||
Sbjct: 294 gaggcagatcc 304
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>ref|NM_184595.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 195

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 230 acccagacggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatc 289
           |||||||||||||||||||| || |||| |||||| ||||| |||||||  |||||||||
Sbjct: 179 acccagacggcgtagatgatccccgggaagtagcccaagaatgtgagcaagaggcagatc 120

            
Query: 290 c 290
           |
Sbjct: 119 c 119
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>gb|BT017793.1| Zea mays clone EL01N0504G08.c mRNA sequence
          Length = 472

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 238 ggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatcc 290
           |||||| ||||||||||||| |||||||| ||||||||| || ||||||||||
Sbjct: 233 ggcgtaaatgatgccggggatgtagccgaggaaggtgaggaggaggcagatcc 181
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 230      acccagacggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatc 289
                |||||||||||||||||||| || |||| |||||| ||||| |||||||  |||||||||
Sbjct: 14387399 acccagacggcgtagatgatccccgggaagtagcccaagaatgtgagcaagaggcagatc 14387458

                 
Query: 290      c 290
                |
Sbjct: 14387459 c 14387459
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>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete
              sequence
          Length = 158714

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 230    acccagacggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatc 289
              |||||||||||||||||||| || |||| |||||| ||||| |||||||  |||||||||
Sbjct: 136628 acccagacggcgtagatgatccccgggaagtagcccaagaatgtgagcaagaggcagatc 136687

               
Query: 290    c 290
              |
Sbjct: 136688 c 136688
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 230      acccagacggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatc 289
                |||||||||||||||||||| || |||| |||||| ||||| |||||||  |||||||||
Sbjct: 14382374 acccagacggcgtagatgatccccgggaagtagcccaagaatgtgagcaagaggcagatc 14382433

                 
Query: 290      c 290
                |
Sbjct: 14382434 c 14382434
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>gb|AY177890.1| Zea mays clone BAC ZMBBb_95H21 ABA-induced gene, partial sequence
          Length = 2248

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 234  agacggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatcc 290
            ||||||||||||||||||| |||| ||| || | || ||||||||||||||||||||
Sbjct: 1235 agacggcgtagatgatgcccgggatgtatcccaggatggtgagcagcaggcagatcc 1179
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>gb|AY107179.1| Zea mays PCO146860 mRNA sequence
          Length = 698

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 234 agacggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatcc 290
           ||||||||||||||||||| |||| ||| || | || ||||||||||||||||||||
Sbjct: 302 agacggcgtagatgatgcccgggatgtatcccaggatggtgagcagcaggcagatcc 246
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 217      ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
                ||||||||||||  |  |||| ||||||||||| || ||||| |||||||||||||||||
Sbjct: 10331955 ctacttggtgatagcatagaccgcgtagatgatccccgggagatagccgaagaaggtgag 10331896

                   
Query: 277      cag 279
                |||
Sbjct: 10331895 cag 10331893



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                     
Query: 238      ggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatcc 290
                ||||||||||||||| || || ||||||| | ||||||| || ||||||||||
Sbjct: 10317926 ggcgtagatgatgcccggaagatagccgaggcaggtgaggagaaggcagatcc 10317874
to top
>dbj|AP002070.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0511C01
          Length = 170402

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                         
Query: 217   ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
             ||||||||||||  |  |||| ||||||||||| || ||||| |||||||||||||||||
Sbjct: 38675 ctacttggtgatagcatagaccgcgtagatgatccccgggagatagccgaagaaggtgag 38616

                
Query: 277   cag 279
             |||
Sbjct: 38615 cag 38613



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 238   ggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatcc 290
             ||||||||||||||| || || ||||||| | ||||||| || ||||||||||
Sbjct: 24646 ggcgtagatgatgcccggaagatagccgaggcaggtgaggagaaggcagatcc 24594
to top
>dbj|AK058343.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D10, full
           insert sequence
          Length = 590

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgag 276
           ||||||||||||  |  |||| ||||||||||| || ||||| |||||||||||||||||
Sbjct: 94  ctacttggtgatagcatagaccgcgtagatgatccccgggagatagccgaagaaggtgag 35

              
Query: 277 cag 279
           |||
Sbjct: 34  cag 32
to top
>ref|NM_183567.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1614

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 234 agacggcgtagatgatgccggggaggtagccgaagaaggtgagcag 279
           |||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 154 agaccgcgtagatgatccccgggagatagccgaagaaggtgagcag 109
to top
>gb|AY131234.1| Triticum aestivum putative low temperature and salt responsive
           protein mRNA, partial cds
          Length = 207

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 237 cggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatcc 290
           ||||||||| || ||||||||||||||||| || ||||||||||| || |||||
Sbjct: 139 cggcgtagaggacgccggggaggtagccgaggatggtgagcagcacgctgatcc 86
to top
>gb|AY105302.1| Zea mays PCO074610 mRNA sequence
          Length = 553

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 239 gcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcaga 287
           ||||||||||| |||||||| ||| ||| |||||||||||| |||||||
Sbjct: 214 gcgtagatgatcccggggagataggcgaggaaggtgagcaggaggcaga 166
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                               
Query: 234     agacggcgtagatgatgccggggaggtagccgaagaaggtgagcagca 281
               |||||||||||| || |||||||||||| |||| || |||||||||||
Sbjct: 4275604 agacggcgtagaggacgccggggaggtacccgaggatggtgagcagca 4275651



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 229      gacccagacggcgtagatgatgccggggaggtag 262
                ||||||||||| ||||| ||||||||||| ||||
Sbjct: 26293474 gacccagacggagtagacgatgccggggacgtag 26293441
to top
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0554A06
          Length = 165311

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 234    agacggcgtagatgatgccggggaggtagccgaagaaggtgagcagca 281
              |||||||||||| || |||||||||||| |||| || |||||||||||
Sbjct: 120825 agacggcgtagaggacgccggggaggtacccgaggatggtgagcagca 120872
to top
>dbj|AK121018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049B21, full
           insert sequence
          Length = 577

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 234 agacggcgtagatgatgccggggaggtagccgaagaaggtgagcagca 281
           |||||||||||| || |||||||||||| |||| || |||||||||||
Sbjct: 214 agacggcgtagaggacgccggggaggtacccgaggatggtgagcagca 167
to top
>gb|BT019258.1| Zea mays clone Contig931.F mRNA sequence
          Length = 610

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 239 gcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagat 288
           ||||||||||| ||||||| |||||| | ||  |||||||||||||||||
Sbjct: 288 gcgtagatgattccggggacgtagccaaggattgtgagcagcaggcagat 337
to top
>gb|AY108684.1| Zea mays PCO116945 mRNA sequence
          Length = 626

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 239 gcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagat 288
           ||||||||||| ||||||| |||||| | ||  |||||||||||||||||
Sbjct: 282 gcgtagatgattccggggacgtagccaaggattgtgagcagcaggcagat 233
to top
>ref|NM_183563.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1110

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 238 ggcgtagatgatgccggggaggtagccgaagaaggtgagcagcaggcagatcc 290
           ||||||||||||||| || || ||||||| | ||||||| || ||||||||||
Sbjct: 25  ggcgtagatgatgcccggaagatagccgaggcaggtgaggagaaggcagatcc 77
to top
>dbj|AB161676.1| Leymus chinensis AcPMP3-1 mRNA for plasma membrane protein 3,
           complete cds
          Length = 579

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 218 tacttggtgatgacccagacggcgtagatgatgccggggaggtagccgaagaaggtgagc 277
           |||||||||||| |  |||  ||||||||||| || |||| ||| |||| ||||||||||
Sbjct: 242 tacttggtgatggcgtagatagcgtagatgatacccgggatgtacccgaggaaggtgagc 183

                        
Query: 278 agcaggcagatcc 290
           |  ||||||||||
Sbjct: 182 aagaggcagatcc 170
to top
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0453H04
          Length = 175047

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 229    gacccagacggcgtagatgatgccggggaggtag 262
              ||||||||||| ||||| ||||||||||| ||||
Sbjct: 158014 gacccagacggagtagacgatgccggggacgtag 157981
to top
>dbj|AK108564.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-C08, full
           insert sequence
          Length = 850

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 229 gacccagacggcgtagatgatgccggggaggtag 262
           ||||||||||| ||||| ||||||||||| ||||
Sbjct: 325 gacccagacggagtagacgatgccggggacgtag 292
to top
>ref|XM_475521.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 165

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 239 gcgtagatgatgccggggaggtagccgaagaaggtgagcagcagg 283
           ||||||||||||||||| | ||| || | || |||||||||||||
Sbjct: 143 gcgtagatgatgccgggtaagtatcccaggatggtgagcagcagg 99
to top
>gb|AC155713.14| Mus musculus 10 BAC RP24-117K18 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 156147

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 35    tgggggaaggtgacagggagggagaggag 63
             ||||||| || ||||||||||||||||||
Sbjct: 97495 tgggggagggggacagggagggagaggag 97467
to top
>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 191    agagacaagcaggcaggcagg 211
              |||||||||||||||||||||
Sbjct: 117246 agagacaagcaggcaggcagg 117226
to top
>gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome 12, complete sequence
          Length = 221662

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 36     gggggaaggtgacagggagggagag 60
              ||||||||| |||||||||||||||
Sbjct: 140568 gggggaaggggacagggagggagag 140544
to top
>gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome 17, complete sequence
          Length = 183027

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     gggaaggtgacagggagggag 58
              |||||||||||||||||||||
Sbjct: 126742 gggaaggtgacagggagggag 126762
to top
>gb|AC153920.5| Mus musculus 10 BAC RP23-82M21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 129551

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 35    tgggggaaggtgacagggagggagaggag 63
             ||||||| || ||||||||||||||||||
Sbjct: 25639 tgggggagggggacagggagggagaggag 25611
to top
>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02,
             complete sequence
          Length = 90509

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 239   gcgtagatgatgccggggaggtagccgaagaaggtgagcagcagg 283
             ||||||||||||||||| | ||| || | || |||||||||||||
Sbjct: 36547 gcgtagatgatgccgggtaagtatcccaggatggtgagcagcagg 36591
to top
>gb|AC152958.1| Mus musculus 6 BAC RP23-301K21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 182995

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   tagagacaagcaggcaggca 209
             ||||||||||||||||||||
Sbjct: 85958 tagagacaagcaggcaggca 85939
to top
>gb|AC126031.2| Mus musculus BAC clone RP24-84F17 from chromosome 19, complete sequence
          Length = 217220

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   agagacaagcaggcaggcag 210
             ||||||||||||||||||||
Sbjct: 73710 agagacaagcaggcaggcag 73691
to top
>gb|AC122188.4| Mus musculus BAC clone RP23-33B7 from chromosome 10, complete sequence
          Length = 217173

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 36     gggggaaggtgacagggagggagaggag 63
              ||||||||| || |||||||||||||||
Sbjct: 213360 gggggaaggagagagggagggagaggag 213333
to top
>ref|XM_545943.2| PREDICTED: Canis familiaris similar to otopetrin 1 (LOC488825), mRNA
          Length = 1452

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   gtgacagggagggagaggag 63
            ||||||||||||||||||||
Sbjct: 1148 gtgacagggagggagaggag 1167
to top
>gb|AC144399.2| Oryctolagus cuniculus clone LBNL1-125D4, complete sequence
          Length = 191541

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      tggatggattatggatacac 28
              ||||||||||||||||||||
Sbjct: 106298 tggatggattatggatacac 106317
to top
>emb|AL512504.9| Human DNA sequence from clone RP11-325E14 on chromosome X Contains a
              heterogeneous nuclear ribonucleoprotein H3 (2H9) (HNRPH3)
              pseudogene, a WW domain binding protein 11 (WBP11)
              pseudogene, a hexokinase 2 (HK2) pseudogene, a proteasome
              (prosome, macropain) subunit, alpha type, 1 (PSMA1)
              pseudogene, the 3' end of the gene for a novel WD repeat
              domain protein and three CpG islands, complete sequence
          Length = 223078

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     gggaaggtgacagggaggga 57
              ||||||||||||||||||||
Sbjct: 196382 gggaaggtgacagggaggga 196401
to top
>emb|AL353679.18| Human DNA sequence from clone RP3-418C23 on chromosome 6 Contains the
             5'end of a novel gene, a novel gene and a CpG island,
             complete sequence
          Length = 100111

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 189   ctagagacaagcaggcaggcaggg 212
             ||||||| ||||||||||||||||
Sbjct: 40660 ctagagataagcaggcaggcaggg 40637
to top
>gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, complete sequence
          Length = 153860

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    acaaacggaacaagttggcc 178
              ||||||||||||||||||||
Sbjct: 126748 acaaacggaacaagttggcc 126729
to top
>emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 on chromosome 22, complete
             sequence
          Length = 198570

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   gcaggcaggcaggggcggct 218
             ||||||||||||||||||||
Sbjct: 87215 gcaggcaggcaggggcggct 87196
to top
>emb|AL117528.1|HSM801052 Homo sapiens genomic DNA; cDNA DKFZp434P2450 (from clone
           DKFZp434P2450)
          Length = 2266

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 189 ctagagacaagcaggcaggcaggg 212
           ||||||| ||||||||||||||||
Sbjct: 635 ctagagataagcaggcaggcaggg 612
to top
>gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, complete sequence
          Length = 181552

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     gggaaggtgacagggaggga 57
              ||||||||||||||||||||
Sbjct: 158741 gggaaggtgacagggaggga 158722
to top
>gb|AC019031.7| Homo sapiens chromosome 8, clone RP11-563O19, complete sequence
          Length = 157076

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   gaagaaggtgagcagcaggc 284
             ||||||||||||||||||||
Sbjct: 77472 gaagaaggtgagcagcaggc 77453
to top
>gb|AC025212.5|AC025212 Homo sapiens chromosome 18, clone RP11-289A1, complete sequence
          Length = 182258

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     gggaaggtgacagggaggga 57
              ||||||||||||||||||||
Sbjct: 168617 gggaaggtgacagggaggga 168636
to top
>gb|AC090023.20| Homo sapiens 12 BAC RP11-221N13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 114177

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    agaaggtgagcagcaggcag 286
              ||||||||||||||||||||
Sbjct: 110620 agaaggtgagcagcaggcag 110601
to top
>gb|AF293359.1|AF293359 Homo sapiens desmocollin 3 (DSC3) gene, complete cds, alternatively
             spliced
          Length = 49087

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    gggaaggtgacagggaggga 57
             ||||||||||||||||||||
Sbjct: 11963 gggaaggtgacagggaggga 11944
to top
>gb|AC117440.5| Homo sapiens 3 BAC RP11-575C1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 199386

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ctagagacaagcaggcaggc 208
             ||||||||||||||||||||
Sbjct: 95020 ctagagacaagcaggcaggc 95001
to top
>gb|AC132605.3| Mus musculus BAC clone RP24-90M10 from chromosome 14, complete sequence
          Length = 170855

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aaggtgacagggagggagag 60
             ||||||||||||||||||||
Sbjct: 76831 aaggtgacagggagggagag 76850
to top
>ref|XM_316287.2| Anopheles gambiae str. PEST ENSANGP00000020503
           (ENSANGG00000018014), partial mRNA
          Length = 1423

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 cgaagaaggtgagcagcagg 283
           ||||||||||||||||||||
Sbjct: 653 cgaagaaggtgagcagcagg 634
to top
>gb|AC114406.11| Mus musculus chromosome 14, clone RP23-8P18, complete sequence
          Length = 203905

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    aaggtgacagggagggagag 60
             ||||||||||||||||||||
Sbjct: 51042 aaggtgacagggagggagag 51023
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 261     agccgaagaaggtgagcagc 280
               ||||||||||||||||||||
Sbjct: 6149292 agccgaagaaggtgagcagc 6149311
to top
>gb|AC140410.3| Mus musculus BAC clone RP23-141J11 from 10, complete sequence
          Length = 205197

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 36    gggggaaggtgacagggagggagaggag 63
             ||||||||| || |||||||||||||||
Sbjct: 66429 gggggaaggagagagggagggagaggag 66456
to top
>emb|AL732572.10| Mouse DNA sequence from clone RP23-32C16 on chromosome 2, complete
             sequence
          Length = 213704

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   acaagcaggcaggcaggggc 214
             ||||||||||||||||||||
Sbjct: 53916 acaagcaggcaggcaggggc 53935


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,813,000
Number of Sequences: 3902068
Number of extensions: 2813000
Number of successful extensions: 62386
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62142
Number of HSP's gapped (non-prelim): 244
length of query: 290
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 268
effective length of database: 17,147,199,772
effective search space: 4595449538896
effective search space used: 4595449538896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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