ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24p18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-as... 30 7.5
2PHS_RHOS4 (Q3IZF4) Putative pterin-4-alpha-carbinolamine dehydra... 30 9.8

>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated|
           protein 10.5) (High sulfur keratin-associated protein
           10.5) (Keratin-associated protein 18-5)
           (Keratin-associated protein 18.5)
          Length = 271

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
 Frame = -3

Query: 189 VEICCKPL*CFPSVKQ----------CNPLQLCLKFLNVCFCV*LCIGFVSCADHCNVDA 40
           V +CCKP+ C P+  +          C P            CV +C   V C   C+ D+
Sbjct: 90  VPVCCKPVCCLPTCSKDSSSCCQQSSCQPTCCASSSCQQSCCVPVCCKPVCCVPTCSEDS 149



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>PHS_RHOS4 (Q3IZF4) Putative pterin-4-alpha-carbinolamine dehydratase (EC|
           4.2.1.96) (PHS) (4-alpha-hydroxy-tetrahydropterin
           dehydratase) (Pterin carbinolamine dehydratase) (PCD)
          Length = 92

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 565 PMLLAQWQQGVTRSDLAKEFSFEEFIKRAG---NFAMLAERFLH 443
           P+L A W     R  L+K F FE F+   G     A+ AE++ H
Sbjct: 9   PLLAAGWSHDPERGVLSKTFGFETFVAAFGFMTRVALWAEKWNH 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,505,278
Number of Sequences: 219361
Number of extensions: 2100495
Number of successful extensions: 5000
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4991
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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