>MUC_CHICK (P01875) Ig mu chain C region|
          Length = 446

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -2

Query: 276 PPSLAGAPVAVPPTTRRERA-VRWSTTHPRSGLSCAALGPSPCGEPNRVPLCMII*RPER 100
           PP  A + + +  +  +E+   R    HPR  +  + + P P   PN +PL + +  P R
Sbjct: 62  PPYRAVSRIQMNQSEGKEKQPFRCRAAHPRGNVEVSVMNPGPIPTPNGIPLFVTMHPPSR 121

Query: 99  NLVSSP 82
                P
Sbjct: 122 EDFEGP 127

>R3HD1_HUMAN (Q15032) R3H domain-containing protein 1|
          Length = 1099

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 292 SRALHASIARWSSRRGTANHSSRTSSSMVYNAPSLWAVVCSLGPKPMR*AQPRPP 128
           S+  H S+AR  S  G+  H++   S++V  +P     + +  P P     P PP
Sbjct: 546 SQFSHMSLARQPSADGSDPHAAMFQSTVVLQSPQQSGYIMTAAPPPHPPPPPPPP 600

>PCSK9_MOUSE (Q80W65) Proprotein convertase subtilisin/kexin type 9 precursor|
           (EC 3.4.21.-) (Proprotein convertase PC9)
           (Subtilisin/kexin-like protease PC9) (Neural
           apoptosis-regulated convertase 1) (NARC-1)
          Length = 694

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +1

Query: 103 LRASNNHTKGDAVGLTAWAWAQGCTRQPRARVRCRP-----SNCSFSTSGWRYRD 252
           L  S + T G  +  T W+   G TR   A  RC P     S  SFS SG R  D
Sbjct: 447 LPPSTHETGGQLLCRTVWSAHSGPTRTATATARCAPEEELLSCSSFSRSGRRRGD 501

>PCSK9_RAT (P59996) Proprotein convertase subtilisin/kexin type 9 precursor|
           (EC 3.4.21.-) (Proprotein convertase PC9)
           (Subtilisin/kexin-like protease PC9) (Neural
           apoptosis-regulated convertase 1) (NARC-1)
          Length = 691

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +1

Query: 103 LRASNNHTKGDAVGLTAWAWAQGCTRQPRARVRCRP-----SNCSFSTSGWRYRD 252
           L  S   T G  +  T W+   G TR   A  RC P     S  SFS SG R  D
Sbjct: 443 LPPSTQETGGQLLCRTVWSAHSGPTRTATATARCAPEEELLSCSSFSRSGRRRGD 497

>CYSA_VIBVU (Q8D653) Sulfate/thiosulfate import ATP-binding protein cysA (EC|
           3.6.3.25) (Sulfate-transporting ATPase)
          Length = 345

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 207 STTHPRSGLSCAALGPSPCGEPNRVPLCMII*RPERNLVSSPN-DVLGLKLQIRPV 43
           S   P  GL  A LGPS CG+ + + +   + RP+   V+  N DV GL ++ R V
Sbjct: 22  SIEFPSGGL-VALLGPSGCGKTSLLRVIAGLERPDSGTVAIQNRDVSGLDIRERQV 76

>DHN4_HORVU (P12949) Dehydrin DHN4 (B18)|
          Length = 225

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 131 GTRLGSPHGLGPKAA---HDSPERGCVVDHRTARSRRVVGGTATGAPASDGGMKGARR 295
           GT +G+  G+G  AA   H  P R    +H+T R      G+++ + + D GM G R+
Sbjct: 24  GTGMGTHGGVGTGAAAGGHYQPMRD---EHQTGRGILHRSGSSSSSSSEDDGMGGRRK 78

>RBFAL_MOUSE (Q6P3B9) Putative ribosome-binding factor A, mitochondrial|
           precursor
          Length = 350

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -1

Query: 301 LASSRALHASIARWSSRRGTANHSSRTSSSMVYNAPSLWAVVCSLGPKPMR*AQPRPPLY 122
           L  S ALH S+A   S+      +S+T     Y  PSL + +            PRP  +
Sbjct: 28  LGRSPALHTSVASCGSKNLLKKFASKTRKKFWYEGPSLGSHL-----------TPRPSKH 76

Query: 121 DYLT 110
           ++LT
Sbjct: 77  EFLT 80

>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1|
           (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220)
          Length = 1402

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 297 PRLAPFMPPS-LAGAPVAVPPTTRRERAVRWSTTHPRSGLS 178
           P LAP  PP+ L+ +PV + PTT+ E  +  + + P   LS
Sbjct: 184 PELAPPPPPACLSESPVPIAPTTQPEELLNGAPSPPAVDLS 224

>GATA1_CHICK (P17678) Erythroid transcription factor (GATA-binding factor 1)|
           (GATA-1) (Eryf1) (NF-E1 DNA-binding protein) (NF-E1A)
          Length = 304

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
 Frame = -2

Query: 291 LAPFMPPSLAGAPVAVPPTTRRE--------RAVRWSTTHPRSG-LSCAALGPSPC 151
           L P+      G P  VPP T+ E        +  R S  HP SG L   + GP PC
Sbjct: 50  LVPWADTGTLGTPQWVPPATQMEPPHYLELLQPPRGSPPHPSSGPLLPLSSGPPPC 105

>PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 478

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 276 PPSLAGAPVAVPPTTRRERAVRWSTTHPRSGLSCAALGPSPCGEPNRV 133
           PP+ +  P A+P T+R        T  P +  S    GP+P G+PN +
Sbjct: 425 PPTTSRIPSALPDTSRLPPGPMAPTRAPWA--SSQPAGPAPTGDPNDI 470

>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2|
            protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile
            X E mental retardation syndrome protein)
          Length = 1311

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 279  MPPSLAGAPVAVPPTTRRERAVRWSTTHPRSGLSCAALGPSPCGEPNR 136
            +PP ++ AP   PP TR   + R +       L    L P P   P R
Sbjct: 880  LPPCISPAPPHKPPNTRENNSSRRANRRKEEKLFPPPLSPLPEDPPRR 927

>AROC_AERPE (Q9YEL4) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 380

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 173 AHDSPER-GCVVDHRTARSRRVVGGTATGAP 262
           AHDSP   G  + H T RS  +VGG   G P
Sbjct: 265 AHDSPRAVGGRIVHETNRSGGIVGGLTNGMP 295

>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation|
           protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 279 MPPSLAGAPVAVPPTTRRERAVRWSTTHPRSGLSCAALGPSPCGEPNR 136
           +PP ++ AP   PP TR   + R +       L    L P P   P R
Sbjct: 841 LPPCISPAPPHKPPNTRENNSSRRANRRKEEKLFPPPLSPLPEDPPRR 888

>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation|
           protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 279 MPPSLAGAPVAVPPTTRRERAVRWSTTHPRSGLSCAALGPSPCGEPNR 136
           +PP ++ AP   PP TR   + R +       L    L P P   P R
Sbjct: 841 LPPCISPAPPHKPPNTRENNSSRRANRRKEEKLFPPPLSPLPEDPPRR 888

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 128 RGTRLGSPHGLGPKAAHDSPERGCVVDHRTARSRRVVGGTATGAP--ASDGGMKGAR 292
           RG     P  LGP  AHD P R     HR    RR    T+T A   +S  G  G+R
Sbjct: 126 RGIYCRLPPRLGP--AHDLPRRPLRRRHRKPGHRRRTSTTSTSASSGSSSAGSTGSR 180

>PPNK2_SYNPX (Q7U406) Probable inorganic polyphosphate/ATP-NAD kinase 2 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 2)
          Length = 316

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
 Frame = -2

Query: 291 LAPFMPPSLAGAPVAVPPTTRRERAVRW---STTHP----RSGLSCAALGPSPC 151
           +AP  P SL+   V VPP   R R V W   +  H     + G+ C  L P  C
Sbjct: 223 VAPICPMSLSSRTVVVPP---RARLVIWPLGAGDHRIKLWKDGVGCTVLEPGEC 273

>Y703_ENCCU (Q8ST93) Hypothetical protein ECU07_0030/ECU09_2040|
          Length = 236

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 285 PFMPPSLAGAPVAVPPTTRRERAVRWSTTHPRSGLSCAALGPSPC-GEPNRVP 130
           P +PP     P +   + R  R  +    HP    SC    P+PC G P R+P
Sbjct: 70  PDIPPK---TPASQAASNRAHRTAK----HPARRQSCKLKAPNPCVGHPLRIP 115

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 261  GAPVAVPPTTRRERAVRWSTTHPRSGLSCAAL-GPSPCGEPNRVP 130
            G PV+  PTTR+  A   ++  PR  L+ + L  P P  +P   P
Sbjct: 2877 GGPVSRRPTTRQPVATPTTSARPRGHLTVSRLSAPQPQPQPQPQP 2921

>POLG_POWVL (Q04538) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3415

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 152  HGLGPKAAHDSPERGCVVDHRTARSRRVVGGTATGAPASDGGMK 283
            H    K A  SP+ GCV+D  T R +R  G   T A  +   MK
Sbjct: 3087 HAKVVKVARPSPQGGCVMDVITRRDQRGSGQVVTYALNTITNMK 3130

>MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domains 9 precursor|
           (EGF-like domain-containing protein 5) (Multiple
           EGF-like domain protein 5)
          Length = 600

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -2

Query: 297 PRLAPFMPPSLAGAPVAVP-PTTRRERAVRWSTTHPRSGLSCAALGPSPCGEP 142
           PR  P  P +    P+A   P    E    W+T  P S    A LGPSP   P
Sbjct: 76  PRTGP--PRATVHRPLAATSPAQSPETTPLWATAGPSSTTFQAPLGPSPTTPP 126

>GFPT1_MOUSE (P47856) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] 1 (EC 2.6.1.16) (Hexosephosphate
           aminotransferase 1) (D-fructose-6-phosphate
           amidotransferase 1) (GFAT 1) (GFAT1)
          Length = 696

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 131 GTRLGSPHGLGPKAAHDSPERGCVVDHRTARSRRVVGGTATGAPASDG 274
           GTR GSP  +G ++ H        + +RTAR++  +G T  G+ A  G
Sbjct: 199 GTRRGSPLLIGVRSEHKLSTDHIPILYRTARTQ--IGSTWWGSQAERG 244

>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
           degradation protein 2) (Homozygously deleted in
           neuroblastoma 1)
          Length = 1302

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 276 PPSLAGAPVAVPPTTRRERAVRWSTTHPRSGLSCAALGPS 157
           PP+LA +P AVP ++ R+R        P +  S  +  PS
Sbjct: 353 PPALASSPQAVPASSSRQRPSSTGPPLPPASPSATSRRPS 392


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,820,565
Number of Sequences: 219361
Number of extensions: 1007782
Number of successful extensions: 3640
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3638
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)