| Clone Name | rbaal25e19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR356245.25| Zebrafish DNA sequence from clone CH211-257I15 in linkage group 8, complete sequence Length = 153042 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aaggaacaaattacaaatact 113 ||||||||||||||||||||| Sbjct: 59942 aaggaacaaattacaaatact 59922
>gb|AC121982.3| Mus musculus BAC clone RP24-291D6 from chromosome 6, complete sequence Length = 167409 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 agtaaacaagcaagcaagcat 213 ||||||||||||||||||||| Sbjct: 125049 agtaaacaagcaagcaagcat 125029
>emb|BX296544.8| Zebrafish DNA sequence from clone DKEYP-14B8 in linkage group 21, complete sequence Length = 168838 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aaggaacaaattacaaatact 113 ||||||||||||||||||||| Sbjct: 26715 aaggaacaaattacaaatact 26695
>emb|BX470182.12| Zebrafish DNA sequence from clone CH211-195P4 in linkage group 16, complete sequence Length = 199742 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 aaggaacaaattacaaatact 113 ||||||||||||||||||||| Sbjct: 32773 aaggaacaaattacaaatact 32793
>emb|AL929077.19| Zebrafish DNA sequence from clone CH211-129K19 in linkage group 15, complete sequence Length = 167866 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aaggaacaaattacaaatact 113 ||||||||||||||||||||| Sbjct: 116623 aaggaacaaattacaaatact 116603
>gb|AC093789.3| Homo sapiens BAC clone RP11-219G10 from 4, complete sequence Length = 202937 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 caagcaagcaagcatactgtt 219 ||||||||||||||||||||| Sbjct: 112000 caagcaagcaagcatactgtt 112020
>gb|AC016736.6| Homo sapiens BAC clone RP11-393J17 from 2, complete sequence Length = 149884 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 aattacaaatactaccttaattagc 125 |||||||||||||||||| |||||| Sbjct: 39551 aattacaaatactacctttattagc 39575
>emb|AL844187.13| Zebrafish DNA sequence from clone DKEY-221D18 in linkage group 16, complete sequence Length = 168637 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aaggaacaaattacaaatact 113 ||||||||||||||||||||| Sbjct: 102757 aaggaacaaattacaaatact 102737
>gb|AC144774.3| Mus musculus BAC clone RP24-128I18 from 6, complete sequence Length = 143838 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 agtaaacaagcaagcaagcat 213 ||||||||||||||||||||| Sbjct: 14387 agtaaacaagcaagcaagcat 14367
>gb|AC114663.8| Mus musculus chromosome 1, clone RP24-172O22, complete sequence Length = 167652 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 aaacaagcaagcaagcatac 215 |||||||||||||||||||| Sbjct: 167418 aaacaagcaagcaagcatac 167399
>ref|XM_466114.1| Oryza sativa (japonica cultivar-group), mRNA Length = 540 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 gcggcggcggcatgaggctc 546 |||||||||||||||||||| Sbjct: 37 gcggcggcggcatgaggctc 18
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 tgagcggcggcggcatgagg 543 |||||||||||||||||||| Sbjct: 3340966 tgagcggcggcggcatgagg 3340947
>gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome 18, complete sequence Length = 158788 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 537 catgaggctctgtggctagc 556 |||||||||||||||||||| Sbjct: 67828 catgaggctctgtggctagc 67847
>ref|XM_953472.1| Neurospora crassa OR74A hypothetical protein (NCU09061.1) partial mRNA Length = 711 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 catcatggccgcctcctcag 449 |||||||||||||||||||| Sbjct: 483 catcatggccgcctcctcag 464
>gb|AC110102.6| Rattus norvegicus 4 BAC CH230-209C7 (Children's Hospital Oakland Research Institute) complete sequence Length = 219273 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 92223 agtaaacaagcaagcaagca 92242
>ref|XM_331452.1| Neurospora crassa OR74A hypothetical protein (NCU09061.1) partial mRNA Length = 711 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 catcatggccgcctcctcag 449 |||||||||||||||||||| Sbjct: 483 catcatggccgcctcctcag 464
>gb|AC087102.3| Rattus norvegicus strain Brown Norway clone RP31-331N5, complete sequence Length = 151673 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 144689 agtaaacaagcaagcaagca 144670
>gb|AC139571.2| Mus musculus BAC clone RP24-73K9 from chromosome 15, complete sequence Length = 210089 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 34419 agtaaacaagcaagcaagca 34400
>gb|AC046160.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-130F23, complete sequence Length = 214627 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 131963 agtaaacaagcaagcaagca 131982
>ref|XM_533356.2| PREDICTED: Canis familiaris similar to Nebulin (LOC476149), mRNA Length = 16878 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 ggccgcctcctcaggcctcc 455 |||||||||||||||||||| Sbjct: 97 ggccgcctcctcaggcctcc 116
>emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on chromosome 13, complete sequence Length = 188616 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aaacaagcaagcaagcatac 215 |||||||||||||||||||| Sbjct: 77738 aaacaagcaagcaagcatac 77757
>gb|AC124385.3| Mus musculus BAC clone RP24-421A2 from chromosome 1, complete sequence Length = 163778 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 92429 agtaaacaagcaagcaagca 92448
>gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome 13, complete sequence Length = 211181 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aaacaagcaagcaagcatac 215 |||||||||||||||||||| Sbjct: 33845 aaacaagcaagcaagcatac 33864
>gb|AY246778.1| Equus caballus subtracted library fragment 14 Length = 771 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ctcaggcctccacgagcctg 464 |||||||||||||||||||| Sbjct: 368 ctcaggcctccacgagcctg 349
>emb|AL451141.13| Human DNA sequence from clone RP11-265E5 on chromosome 6, complete sequence Length = 63966 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 ccgcctcctcaggcctccac 457 |||||||||||||||||||| Sbjct: 32438 ccgcctcctcaggcctccac 32457
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gcaggcctgcatggtccact 328 |||||||||||||||||||| Sbjct: 695791 gcaggcctgcatggtccact 695810
>gb|AC127142.3| Rattus norvegicus 4 BAC CH230-41K13 (Children's Hospital Oakland Research Institute) complete sequence Length = 238669 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 78856 agtaaacaagcaagcaagca 78875
>emb|AL596096.7| Mouse DNA sequence from clone RP23-42P20 on chromosome 11 Contains the 5' end of the Alox12e gene for epidermal arachidonate lipoxygenase, the gene for arachidonate 15-lipoxygenase, a novel pseudogene, two genes for novel proteins (4930563C04Rik, 1110030J09Rik), a Mitochondrial 28S ribosomal protein pseudogene, a NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 (Ndufb8) pseudogene, the gene for a novel protein similar to Beta-arrestin 2 (Arrestin, beta 2) (LOC216869), the Cxcl16 gene for chemokine (C-X-C motif) ligand 16, the gene for a novel protein similar to human zinc finger MYND domain containg 15 (ZMYND15), the 5' end of the gene for a novel protein (2010003F10Rik) and three CpG islands, complete sequence Length = 193277 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 tagtaaacaagcaagcaagc 211 |||||||||||||||||||| Sbjct: 104199 tagtaaacaagcaagcaagc 104218
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ggcatcggcggctgcgcgcc 429 |||||||||||||||||||| Sbjct: 180708 ggcatcggcggctgcgcgcc 180727
>gb|AC121515.3| Rattus norvegicus strain Brown Norway clone RP31-425H6, complete sequence Length = 152757 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 14916 agtaaacaagcaagcaagca 14897
>gb|AC091938.2| Homo sapiens chromosome 5 clone RP11-329N11, complete sequence Length = 70122 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aaacaagcaagcaagcatac 215 |||||||||||||||||||| Sbjct: 58081 aaacaagcaagcaagcatac 58100
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gcgcccatcatggccgcctc 444 |||||||||||||||||||| Sbjct: 2617717 gcgcccatcatggccgcctc 2617736 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 gcgcccatcatggccgcctc 444 |||||||||||||||||||| Sbjct: 2602795 gcgcccatcatggccgcctc 2602776
>gb|AC008972.8| Homo sapiens chromosome 5 clone CTD-2376I4, complete sequence Length = 98842 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 89478 agtaaacaagcaagcaagca 89497
>gb|AC154332.2| Mus musculus BAC clone RP23-259P17 from chromosome 14, complete sequence Length = 208155 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 8770 agtaaacaagcaagcaagca 8789
>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence Length = 189979 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 165320 agtaaacaagcaagcaagca 165339
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 gcggcggcggcatgaggctc 546 |||||||||||||||||||| Sbjct: 20490958 gcggcggcggcatgaggctc 20490977
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 350937 agtaaacaagcaagcaagca 350918
>gb|AC012119.8| Homo sapiens chromosome 8, clone RP11-175E9, complete sequence Length = 154898 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 gggttgcatcagcgacctac 512 |||||||||||||||||||| Sbjct: 118134 gggttgcatcagcgacctac 118153
>dbj|AP005771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0069D13 Length = 157088 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 gcggcggcggcatgaggctc 546 |||||||||||||||||||| Sbjct: 133382 gcggcggcggcatgaggctc 133401
>gb|AC110562.17| Mus musculus chromosome 17, clone RP23-268M4, complete sequence Length = 165190 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 aaacaagcaagcaagcatac 215 |||||||||||||||||||| Sbjct: 76765 aaacaagcaagcaagcatac 76746
>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence Length = 174902 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aaacaagcaagcaagcatac 215 |||||||||||||||||||| Sbjct: 131196 aaacaagcaagcaagcatac 131215
>gb|AC161242.2| Mus musculus BAC clone RP24-200E4 from chromosome 12, complete sequence Length = 179665 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 83269 agtaaacaagcaagcaagca 83288
>gb|AC142410.4| Mus musculus BAC clone RP24-173I18 from 1, complete sequence Length = 145213 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 143103 agtaaacaagcaagcaagca 143084
>emb|CR936841.11| Mouse DNA sequence from clone DN-491F10 on chromosome 11, complete sequence Length = 114510 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 tagtaaacaagcaagcaagc 211 |||||||||||||||||||| Sbjct: 56032 tagtaaacaagcaagcaagc 56051
>emb|AL671989.4| B.floridae DNA sequence from clone XX-BF17P53, complete sequence Length = 42326 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agtaaacaagcaagcaagca 212 |||||||||||||||||||| Sbjct: 27592 agtaaacaagcaagcaagca 27611 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,170,295 Number of Sequences: 3902068 Number of extensions: 4170295 Number of successful extensions: 102297 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102006 Number of HSP's gapped (non-prelim): 291 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)