ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24p11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009607.1| Triticum aestivum clone wre1n.pk0094.e6:fis, full... 876 0.0
2dbj|AK099850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 468 e-128
3gb|AY105171.1| Zea mays PCO087106 mRNA sequence 198 2e-47
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 117 5e-23
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 117 5e-23
6gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 117 5e-23
7gb|DQ075204.1| Glycine max chorismate synthase mRNA, complete cds 68 4e-08
8emb|X60544.1|CSCHOSYN C.sempervirens mRNA for chorismate synthas... 68 4e-08
9emb|Z21791.1|LECHOSYNB L.esculentum chorismate synthase 2 precursor 64 7e-07
10ref|NM_103779.3| Arabidopsis thaliana EMB1144; chorismate syntha... 62 3e-06
11gb|BT015785.1| Arabidopsis thaliana At1g48850 mRNA, complete cds 62 3e-06
12gb|AY057519.1| Arabidopsis thaliana At1g48850/T24P22_3 mRNA, com... 62 3e-06
13emb|BX818532.1|CNS0ACMM Arabidopsis thaliana Full-length cDNA Co... 62 3e-06
14emb|BX815746.1|CNS0ACWT Arabidopsis thaliana Full-length cDNA Co... 62 3e-06
15dbj|AK220709.1| Arabidopsis thaliana mRNA for hypothetical prote... 60 1e-05
16ref|NM_001036080.1| Arabidopsis thaliana EMB1144; chorismate syn... 56 2e-04
17gb|DQ166526.1| Fagus sylvatica putative chorismate synthase mRNA... 50 0.010
18ref|NM_001036081.1| Arabidopsis thaliana EMB1144; chorismate syn... 48 0.039
19emb|BX814847.1|CNS0ACYT Arabidopsis thaliana Full-length cDNA Co... 48 0.039
20gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24... 48 0.039
21emb|Z21796.1|LECHOSYNA L.esculentum chorismate synthase 1 precursor 46 0.16
22gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 2.4
23gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 9.6
24gb|BC045246.1| Xenopus laevis similar to golgi SNAP receptor com... 40 9.6
25emb|CR388194.8| Zebrafish DNA sequence from clone DKEY-20H20 in ... 40 9.6
26gb|AC123817.4| Mus musculus BAC clone RP24-255D13 from chromosom... 40 9.6
27emb|AL353652.17| Human DNA sequence from clone RP11-279F15 on ch... 40 9.6
28emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; se... 40 9.6
29gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosom... 40 9.6
30gb|AC149134.2| Medicago truncatula, complete sequence 40 9.6
31gb|AC154567.3| Mus musculus BAC clone RP23-245F1 from chromosome... 40 9.6
32gb|AY884246.1| Heterocapsa triquetra chloroplast glyceraldehyde-... 40 9.6
33dbj|AB106700.1| Heterocapsa triquetra GapC1 mRNA for glyceraldeh... 40 9.6
34emb|BX005386.8| Zebrafish DNA sequence from clone DKEY-21M1 in l... 40 9.6
35gb|AY861482.1| Malus x domestica clone MS06C09 microsatellite se... 40 9.6

>gb|BT009607.1| Triticum aestivum clone wre1n.pk0094.e6:fis, full insert mRNA
           sequence
          Length = 1057

 Score =  876 bits (442), Expect = 0.0
 Identities = 490/506 (96%)
 Strand = Plus / Minus

                                                                       
Query: 194 atatataagagggccatgtcgttccaaggcaggcatcatgctagatctggtgccaacgca 253
           |||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 810 atatgtaagagggccttctcgttccaaggcgggcatcatgctagatctggtgccaacgca 751

                                                                       
Query: 254 ggtgtactgttcgcggaaccgattggttcttgtagggcgaggttcagcgggaacatctcg 313
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggtgtactgtttgcggagccgattggttcttgtagggcgaggttcagcgggaacatctcg 691

                                                                       
Query: 314 cattgagcaacatgtgccatcagctggtccatgaggaccaatgcggccatcgtctccacc 373
           || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 690 cactgagcaacatgtgccatcagctggtccatgaggaccaatgcagccatcgtctccacc 631

                                                                       
Query: 374 attggaacagcccgagggacaacacatgggtcatggcgaccccttgtcagaagctcgata 433
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 630 attggaacagcccgagggacgacacatgggtcatggcgaccccttgtcagaagttcgata 571

                                                                       
Query: 434 tcctcatgatcccttgtcacagtattttgcttcttcccaatagttgctgttggcttgaaa 493
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tcctcatgatcccttgttacagtattttgcttcttcccaatagttgctgttggcttgaaa 511

                                                                       
Query: 494 gctactttgaagtatatggtttcaccatttgatatcccgccctgtacaccgcccgagcga 553
           ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 510 gctactttgaagtatatagtttcaccatttgatatccctccctgtacaccgcccgagcga 451

                                                                       
Query: 554 ttggttcgtgttctcacatttccaccctcatccatatagaactcatcgttatgctcactt 613
           |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 450 ttggttcgtgttcttacatttccagcctcgtccatatagaactcatcgttatgctcactt 391

                                                                       
Query: 614 ccagttaggtcagtacctgcaaatccactaccgatctcaaaccccttgcttgcaggaaga 673
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccagttaggtcagtacctgcaaatccactaccgatctcaaaccccttgcttgcaggaaga 331

                                     
Query: 674 gaaagcatagcctttgccagtagagc 699
           ||||||||||||||||||||||||||
Sbjct: 330 gaaagcatagcctttgccagtagagc 305



 Score =  252 bits (127), Expect = 1e-63
 Identities = 160/169 (94%), Gaps = 2/169 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctattgctnncattgactggttgtccagcaacaaactgttct-gccgcaaacttttat 59
           ||||||||||  |||||||||||||||||| ||||||||||||  |||||||||||||||
Sbjct: 996 ttctattgctcacattgactggttgtccag-aacaaactgttcacgccgcaaacttttat 938

                                                                       
Query: 60  tttcggtgatcaactgatctctcggtgtacactaatccaatgtatattctaggatacagg 119
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 937 tttcggtgatcaacagatctcttggtgtacactaatccaatgtatattctaggatacagg 878

                                                            
Query: 120 tttggtacaaaactgcaaactgcttggcaaaaccctgaaatgtgacaga 168
           ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 877 tttggtacaaaactgcaaactgcttagcaaaaccctgaaatgtggcaga 829



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>dbj|AK099850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110C10, full
            insert sequence
          Length = 1607

 Score =  468 bits (236), Expect = e-128
 Identities = 365/408 (89%)
 Strand = Plus / Minus

                                                                        
Query: 277  tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 336
            |||||||||||| || |||||||| || |||||||| ||||||||||  || ||||||||
Sbjct: 1327 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 1268

                                                                        
Query: 337  ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagcccgagggacaac 396
            ||||||||||||||| ||||||||||| | ||||||||| || ||||| |||||||||||
Sbjct: 1267 ctggtccatgaggactaatgcggccatggactccaccatcggcacagcgcgagggacaac 1208

                                                                        
Query: 397  acatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcccttgtcacagt 456
            ||||||||| ||||| |||||||  | ||| || | ||||||||| |||||||  |||||
Sbjct: 1207 acatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcccttgaaacagt 1148

                                                                        
Query: 457  attttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtttc 516
            || ||| |||||||||||||| || |||||||||||||||||||||||||||||  ||||
Sbjct: 1147 atgttgtttcttcccaatagtcgcggttggcttgaaagctactttgaagtatataatttc 1088

                                                                        
Query: 517  accatttgatatcccgccctgtacaccgcccgagcgattggttcgtgttctcacatttcc 576
            ||||||||||||||| ||||| |||||||| || ||||| |||| |||||||||||||||
Sbjct: 1087 accatttgatatccctccctgcacaccgcctgaacgattagttcttgttctcacatttcc 1028

                                                                        
Query: 577  accctcatccatatagaactcatcgttatgctcacttccagttaggtcagtacctgcaaa 636
            | |||||||||||||||||||||| |||||||||||||||||   |||||||||||||||
Sbjct: 1027 agcctcatccatatagaactcatcattatgctcacttccagtgtagtcagtacctgcaaa 968

                                                            
Query: 637  tccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagc 684
            |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  tccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagc 920



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>gb|AY105171.1| Zea mays PCO087106 mRNA sequence
          Length = 1626

 Score =  198 bits (100), Expect = 2e-47
 Identities = 322/396 (81%)
 Strand = Plus / Minus

                                                                        
Query: 299  agcgggaacatctcgcattgagcaacatgtgccatcagctggtccatgaggaccaatgcg 358
            |||| |||||||||||| ||||| || || |||||||||||||||||||||||||| |||
Sbjct: 1331 agcgcgaacatctcgcactgagccacgtgcgccatcagctggtccatgaggaccaacgcg 1272

                                                                        
Query: 359  gccatcgtctccaccattggaacagcccgagggacaacacatgggtcatggcgacccctt 418
            ||||| |  |||||||  |||||||| |||||| | || |||||||||||||| || |||
Sbjct: 1271 gccatggattccaccacaggaacagctcgaggggcgacgcatgggtcatggcgccctctt 1212

                                                                        
Query: 419  gtcagaagctcgatatcctcatgatcccttgtcacagtattttgcttcttcccaatagtt 478
            |  |||||||| |  | || | | ||||||| ||| || || || |||  ||| |||| |
Sbjct: 1211 gctagaagctcaacgttctgacgctcccttgacacggtgttctgtttcaccccgatagat 1152

                                                                        
Query: 479  gctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatcccgccctgt 538
            | ||| ||||| ||||| ||||||||||  |   | ||| |||| |||||||| ||||| 
Sbjct: 1151 ggtgtcggcttaaaagcaactttgaagtgcacaatctcaacattcgatatccctccctgc 1092

                                                                        
Query: 539  acaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatatagaactca 598
            ||||| ||||||||||| || ||||| || ||| ||||| ||| ||||||||| ||||||
Sbjct: 1091 acaccacccgagcgattagtccgtgtcctgacacttccagccttatccatataaaactca 1032

                                                                        
Query: 599  tcgttatgctcacttccagttaggtcagtacctgcaaatccactaccgatctcaaacccc 658
            || |||||||||||||| || | ||| || || || ||||| || || ||||| ||||| 
Sbjct: 1031 tcattatgctcacttcctgtcaagtcggtcccggcgaatccgctgccaatctcgaacccg 972

                                                
Query: 659  ttgcttgcaggaagagaaagcatagcctttgccagt 694
            ||||| ||||||| |||||||||||| |||||||||
Sbjct: 971  ttgctcgcaggaatagaaagcatagcttttgccagt 936



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  117 bits (59), Expect = 5e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                           
Query: 534     cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 593
               |||| |||||||| || ||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 8149872 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 8149931

                                                      
Query: 594     actcatcgttatgctcacttccagttaggtcagtacctg 632
               ||||||| |||||||||||||||||   |||||||||||
Sbjct: 8149932 actcatcattatgctcacttccagtgtagtcagtacctg 8149970



 Score =  111 bits (56), Expect = 3e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                           
Query: 277     tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 336
               |||||||||||| || |||||||| || |||||||| ||||||||||  || ||||||||
Sbjct: 8148971 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 8149030

                                                               
Query: 337     ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 384
               ||||||||||||||| ||||||||||| | ||||||||| || |||||
Sbjct: 8149031 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 8149078



 Score =  107 bits (54), Expect = 5e-20
 Identities = 57/58 (98%)
 Strand = Plus / Plus

                                                                         
Query: 627     tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagc 684
               |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8150073 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagc 8150130



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                           
Query: 469     cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 528
               ||||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 8149667 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 8149726

                        
Query: 529     cccgccctg 537
               ||| |||||
Sbjct: 8149727 ccctccctg 8149735



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                           
Query: 386     cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 445
               |||||||||||||||||||| ||||| |||||||  | ||| || | ||||||||| |||
Sbjct: 8149318 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 8149377

                                       
Query: 446     cttgtcacagtattttgcttcttc 469
               ||||  ||||||| ||| ||||||
Sbjct: 8149378 cttgaaacagtatgttgtttcttc 8149401



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  117 bits (59), Expect = 5e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                           
Query: 534     cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 593
               |||| |||||||| || ||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 8147707 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 8147766

                                                      
Query: 594     actcatcgttatgctcacttccagttaggtcagtacctg 632
               ||||||| |||||||||||||||||   |||||||||||
Sbjct: 8147767 actcatcattatgctcacttccagtgtagtcagtacctg 8147805



 Score =  111 bits (56), Expect = 3e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                           
Query: 277     tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 336
               |||||||||||| || |||||||| || |||||||| ||||||||||  || ||||||||
Sbjct: 8146806 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 8146865

                                                               
Query: 337     ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 384
               ||||||||||||||| ||||||||||| | ||||||||| || |||||
Sbjct: 8146866 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 8146913



 Score =  107 bits (54), Expect = 5e-20
 Identities = 57/58 (98%)
 Strand = Plus / Plus

                                                                         
Query: 627     tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagc 684
               |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8147908 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagc 8147965



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                           
Query: 469     cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 528
               ||||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 8147502 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 8147561

                        
Query: 529     cccgccctg 537
               ||| |||||
Sbjct: 8147562 ccctccctg 8147570



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                           
Query: 386     cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 445
               |||||||||||||||||||| ||||| |||||||  | ||| || | ||||||||| |||
Sbjct: 8147153 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 8147212

                                       
Query: 446     cttgtcacagtattttgcttcttc 469
               ||||  ||||||| ||| ||||||
Sbjct: 8147213 cttgaaacagtatgttgtttcttc 8147236



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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score =  117 bits (59), Expect = 5e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                         
Query: 534   cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 593
             |||| |||||||| || ||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 81302 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 81361

                                                    
Query: 594   actcatcgttatgctcacttccagttaggtcagtacctg 632
             ||||||| |||||||||||||||||   |||||||||||
Sbjct: 81362 actcatcattatgctcacttccagtgtagtcagtacctg 81400



 Score =  111 bits (56), Expect = 3e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                         
Query: 277   tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 336
             |||||||||||| || |||||||| || |||||||| ||||||||||  || ||||||||
Sbjct: 80401 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 80460

                                                             
Query: 337   ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 384
             ||||||||||||||| ||||||||||| | ||||||||| || |||||
Sbjct: 80461 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 80508



 Score =  107 bits (54), Expect = 5e-20
 Identities = 57/58 (98%)
 Strand = Plus / Plus

                                                                       
Query: 627   tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagc 684
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 81503 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagc 81560



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                         
Query: 469   cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 528
             ||||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 81097 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 81156

                      
Query: 529   cccgccctg 537
             ||| |||||
Sbjct: 81157 ccctccctg 81165



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                         
Query: 386   cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 445
             |||||||||||||||||||| ||||| |||||||  | ||| || | ||||||||| |||
Sbjct: 80748 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 80807

                                     
Query: 446   cttgtcacagtattttgcttcttc 469
             ||||  ||||||| ||| ||||||
Sbjct: 80808 cttgaaacagtatgttgtttcttc 80831



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>gb|DQ075204.1| Glycine max chorismate synthase mRNA, complete cds
          Length = 1485

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 136/170 (80%)
 Strand = Plus / Minus

                                                                        
Query: 449  gtcacagtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtat 508
            ||||||||||| |||||||| ||||| |||| ||||||||||||||||| | | |  |  
Sbjct: 1174 gtcacagtattgtgcttctttccaattgttgatgttggcttgaaagctattctcatatta 1115

                                                                        
Query: 509  atggtttcaccatttgatatcccgccctgtacaccgcccgagcgattggttcgtgttctc 568
            ||| |||| ||||| || || || |||||||  || || |||||||| |||| |||||| 
Sbjct: 1114 atgatttccccattggaaattccaccctgtatcccaccagagcgatttgttcttgttctt 1055

                                                              
Query: 569  acatttccaccctcatccatatagaactcatcgttatgctcacttccagt 618
               ||||||   ||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 1054 gtgtttccatgttcatctatatagaactcatcattatgttcactcccagt 1005



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>emb|X60544.1|CSCHOSYN C.sempervirens mRNA for chorismate synthase precursor
          Length = 1754

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 106/130 (81%)
 Strand = Plus / Minus

                                                                        
Query: 368  tccaccattggaacagcccgagggacaacacatgggtcatggcgaccccttgtcagaagc 427
            ||||||||||||||||| ||||| |||||||| ||||| |||||||| | ||  |  || 
Sbjct: 1369 tccaccattggaacagctcgaggtacaacacaagggtcgtggcgaccacgtgctatgagt 1310

                                                                        
Query: 428  tcgatatcctcatgatcccttgtcacagtattttgcttcttcccaatagttgctgttggc 487
            || || || ||| | || || ||||||||||| |||||||| ||||| || | ||| |||
Sbjct: 1309 tcaatctcttcacgttctctggtcacagtattctgcttctttccaattgtagatgtcggc 1250

                      
Query: 488  ttgaaagcta 497
            ||||||||||
Sbjct: 1249 ttgaaagcta 1240



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>emb|Z21791.1|LECHOSYNB L.esculentum chorismate synthase 2 precursor
          Length = 1802

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 581  tcatccatatagaactcatcgttatgctcacttccagttaggtcagtacctgcaaatcca 640
            ||||||||| |||||||||| ||||||||||| ||||| | |  |||||||||||| |||
Sbjct: 1003 tcatccataaagaactcatcattatgctcactgccagtcatgaaagtacctgcaaagcca 944

                                
Query: 641  ctaccgatctcaaacccctt 660
            || || | |||||| |||||
Sbjct: 943  cttccaaactcaaaaccctt 924



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>ref|NM_103779.3| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144)
            transcript variant AT1G48850.1 mRNA, complete cds
          Length = 1953

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 455  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1228 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1169

                                   
Query: 515  tcaccatttgatatcccgccctg 537
            ||||||||||| ||||| |||||
Sbjct: 1168 tcaccatttgagatccctccctg 1146



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>gb|BT015785.1| Arabidopsis thaliana At1g48850 mRNA, complete cds
          Length = 1311

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 455  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1094 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1035

                                   
Query: 515  tcaccatttgatatcccgccctg 537
            ||||||||||| ||||| |||||
Sbjct: 1034 tcaccatttgagatccctccctg 1012



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>gb|AY057519.1| Arabidopsis thaliana At1g48850/T24P22_3 mRNA, complete cds
          Length = 1603

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 455  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1216 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1157

                                   
Query: 515  tcaccatttgatatcccgccctg 537
            ||||||||||| ||||| |||||
Sbjct: 1156 tcaccatttgagatccctccctg 1134



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>emb|BX818532.1|CNS0ACMM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL84ZB05 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1494

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 455  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1169 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1110

                                   
Query: 515  tcaccatttgatatcccgccctg 537
            ||||||||||| ||||| |||||
Sbjct: 1109 tcaccatttgagatccctccctg 1087



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>emb|BX815746.1|CNS0ACWT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS8ZG07 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1488

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 455  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1156 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1097

                                   
Query: 515  tcaccatttgatatcccgccctg 537
            ||||||||||| ||||| |||||
Sbjct: 1096 tcaccatttgagatccctccctg 1074



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>dbj|AK220709.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-03-E08
          Length = 460

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 455 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514
           |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 87  gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 28

                                 
Query: 515 tcaccatttgatatcccgccct 536
           ||||||||||| ||||| ||||
Sbjct: 27  tcaccatttgagatccctccct 6



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>ref|NM_001036080.1| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144)
            transcript variant AT1G48850.2 mRNA, complete cds
          Length = 2020

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 70/83 (84%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 455  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514
            |||||||||||||  ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1226 gtattttgcttct--ccaattgttgatgttggcttgaaggctactctcatgtttattatt 1169

                                   
Query: 515  tcaccatttgatatcccgccctg 537
            ||||||||||| ||||| |||||
Sbjct: 1168 tcaccatttgagatccctccctg 1146



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>gb|DQ166526.1| Fagus sylvatica putative chorismate synthase mRNA, complete cds
          Length = 1643

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                        
Query: 472  aatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatccc 531
            |||||| ||||||||||||||||||||| | |  | ||||  ||| |||||||| || ||
Sbjct: 1134 aatagtagctgttggcttgaaagctactctcatatttatgacttccccatttgagattcc 1075

                                         
Query: 532  gccctgtacaccgcccgagcgattggttc 560
             |||||||  ||||| ||||| |||||||
Sbjct: 1074 tccctgtatcccgccagagcggttggttc 1046



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>ref|NM_001036081.1| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144)
            transcript variant AT1G48850.3 mRNA, complete cds
          Length = 2020

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 470  ccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatc 529
            ||||| |||| |||||||||||| |||||| | | || |||  ||||||||||||| |||
Sbjct: 1213 ccaattgttgatgttggcttgaaggctactctcatgtttattatttcaccatttgagatc 1154

                    
Query: 530  ccgccctg 537
            || |||||
Sbjct: 1153 cctccctg 1146



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>emb|BX814847.1|CNS0ACYT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS10ZH06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1538

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 70/84 (83%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                        
Query: 455  gtattttgcttcttcccaatagttgct-gttggcttgaaagctactttgaagtatatggt 513
            |||||||||||| | ||||| |||| | ||||||||||| |||||| | | || |||  |
Sbjct: 1229 gtattttgcttccttccaattgttgattgttggcttgaaggctactctcatgtttattat 1170

                                    
Query: 514  ttcaccatttgatatcccgccctg 537
            |||||||||||| ||||| |||||
Sbjct: 1169 ttcaccatttgagatccctccctg 1146



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>gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24P22 genomic sequence, complete
             sequence
          Length = 18062

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                         
Query: 470   ccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatc 529
             ||||| |||| |||||||||||| |||||| | | || |||  ||||||||||||| |||
Sbjct: 10181 ccaattgttgatgttggcttgaaggctactctcatgtttattatttcaccatttgagatc 10122

                         
Query: 530   ccgccctgtaca 541
             || |||| ||||
Sbjct: 10121 cctccctataca 10110



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>emb|Z21796.1|LECHOSYNA L.esculentum chorismate synthase 1 precursor
          Length = 1701

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 371  accattggaacagcccgagggacaacacatgggtcatggcgacccct 417
            |||||||||||||| || || || ||||| || ||||||||||||||
Sbjct: 1223 accattggaacagctcggggaaccacacaaggatcatggcgacccct 1177



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 580  ctcatccatatagaactcatcgttatgctcacttccagt 618
            ||||||||||||||| ||||| |||||||| || |||||
Sbjct: 1014 ctcatccatatagaattcatcattatgctcgctaccagt 976



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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 643    accgatctcaaaccccttgct 663
              |||||||||||||||||||||
Sbjct: 355403 accgatctcaaaccccttgct 355423



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    agggcgaggttcagcgggaa 306
              ||||||||||||||||||||
Sbjct: 547718 agggcgaggttcagcgggaa 547699



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>gb|BC045246.1| Xenopus laevis similar to golgi SNAP receptor complex member 1,
           mRNA (cDNA clone IMAGE:5542326), partial cds
          Length = 2311

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 tcttcccaatagttgctgtt 484
           ||||||||||||||||||||
Sbjct: 42  tcttcccaatagttgctgtt 23



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>emb|CR388194.8| Zebrafish DNA sequence from clone DKEY-20H20 in linkage group 1,
             complete sequence
          Length = 75231

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   tccatatagaactcatcgtt 603
             ||||||||||||||||||||
Sbjct: 60161 tccatatagaactcatcgtt 60142



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>gb|AC123817.4| Mus musculus BAC clone RP24-255D13 from chromosome 9, complete sequence
          Length = 169614

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   aatgtgacagacagatgaaa 177
             ||||||||||||||||||||
Sbjct: 55703 aatgtgacagacagatgaaa 55684



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>emb|AL353652.17| Human DNA sequence from clone RP11-279F15 on chromosome 13 Contains a
             CpG island, complete sequence
          Length = 126837

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   gtcacagtattttgcttctt 468
             ||||||||||||||||||||
Sbjct: 19843 gtcacagtattttgcttctt 19824



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>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5
          Length = 349742

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 470    ccaatagttgctgttggcttgaaagcta 497
              ||||||||||||||||| || |||||||
Sbjct: 218924 ccaatagttgctgttggtttaaaagcta 218897



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>gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosome ul, complete sequence
          Length = 205759

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 664    tgcaggaagagaaagcatag 683
              ||||||||||||||||||||
Sbjct: 167906 tgcaggaagagaaagcatag 167887



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>gb|AC149134.2| Medicago truncatula, complete sequence
          Length = 133336

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    tactttgaagtatatggttt 515
              ||||||||||||||||||||
Sbjct: 132148 tactttgaagtatatggttt 132129



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>gb|AC154567.3| Mus musculus BAC clone RP23-245F1 from chromosome 14, complete sequence
          Length = 155103

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   ttctcacatttccaccctca 583
             ||||||||||||||||||||
Sbjct: 54830 ttctcacatttccaccctca 54811



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>gb|AY884246.1| Heterocapsa triquetra chloroplast glyceraldehyde-3-phosphate
            dehydrogenase (GAPDH1) mRNA, partial cds; nuclear gene
            for chloroplast product
          Length = 1176

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  tccaaggcaggcatcatgct 235
            ||||||||||||||||||||
Sbjct: 1129 tccaaggcaggcatcatgct 1148



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>dbj|AB106700.1| Heterocapsa triquetra GapC1 mRNA for glyceraldehyde-3-phosphate
           dehydrogenase, partial cds
          Length = 901

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 tccaaggcaggcatcatgct 235
           ||||||||||||||||||||
Sbjct: 854 tccaaggcaggcatcatgct 873



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>emb|BX005386.8| Zebrafish DNA sequence from clone DKEY-21M1 in linkage group 1, complete
              sequence
          Length = 170040

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 584    tccatatagaactcatcgtt 603
              ||||||||||||||||||||
Sbjct: 124206 tccatatagaactcatcgtt 124187



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>gb|AY861482.1| Malus x domestica clone MS06C09 microsatellite sequence
          Length = 465

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 470 ccaatagttgctgttggcttgaaagcta 497
           |||||||| |||||||||||||| ||||
Sbjct: 57  ccaatagtagctgttggcttgaaggcta 30


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,720,669
Number of Sequences: 3902068
Number of extensions: 5720669
Number of successful extensions: 93406
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93226
Number of HSP's gapped (non-prelim): 179
length of query: 699
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 676
effective length of database: 17,143,297,704
effective search space: 11588869247904
effective search space used: 11588869247904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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