| Clone Name | rbaal24p11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009607.1| Triticum aestivum clone wre1n.pk0094.e6:fis, full insert mRNA sequence Length = 1057 Score = 876 bits (442), Expect = 0.0 Identities = 490/506 (96%) Strand = Plus / Minus Query: 194 atatataagagggccatgtcgttccaaggcaggcatcatgctagatctggtgccaacgca 253 |||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 810 atatgtaagagggccttctcgttccaaggcgggcatcatgctagatctggtgccaacgca 751 Query: 254 ggtgtactgttcgcggaaccgattggttcttgtagggcgaggttcagcgggaacatctcg 313 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 750 ggtgtactgtttgcggagccgattggttcttgtagggcgaggttcagcgggaacatctcg 691 Query: 314 cattgagcaacatgtgccatcagctggtccatgaggaccaatgcggccatcgtctccacc 373 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 690 cactgagcaacatgtgccatcagctggtccatgaggaccaatgcagccatcgtctccacc 631 Query: 374 attggaacagcccgagggacaacacatgggtcatggcgaccccttgtcagaagctcgata 433 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 630 attggaacagcccgagggacgacacatgggtcatggcgaccccttgtcagaagttcgata 571 Query: 434 tcctcatgatcccttgtcacagtattttgcttcttcccaatagttgctgttggcttgaaa 493 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 570 tcctcatgatcccttgttacagtattttgcttcttcccaatagttgctgttggcttgaaa 511 Query: 494 gctactttgaagtatatggtttcaccatttgatatcccgccctgtacaccgcccgagcga 553 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 510 gctactttgaagtatatagtttcaccatttgatatccctccctgtacaccgcccgagcga 451 Query: 554 ttggttcgtgttctcacatttccaccctcatccatatagaactcatcgttatgctcactt 613 |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 450 ttggttcgtgttcttacatttccagcctcgtccatatagaactcatcgttatgctcactt 391 Query: 614 ccagttaggtcagtacctgcaaatccactaccgatctcaaaccccttgcttgcaggaaga 673 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 ccagttaggtcagtacctgcaaatccactaccgatctcaaaccccttgcttgcaggaaga 331 Query: 674 gaaagcatagcctttgccagtagagc 699 |||||||||||||||||||||||||| Sbjct: 330 gaaagcatagcctttgccagtagagc 305 Score = 252 bits (127), Expect = 1e-63 Identities = 160/169 (94%), Gaps = 2/169 (1%) Strand = Plus / Minus Query: 1 ttctattgctnncattgactggttgtccagcaacaaactgttct-gccgcaaacttttat 59 |||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 996 ttctattgctcacattgactggttgtccag-aacaaactgttcacgccgcaaacttttat 938 Query: 60 tttcggtgatcaactgatctctcggtgtacactaatccaatgtatattctaggatacagg 119 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 937 tttcggtgatcaacagatctcttggtgtacactaatccaatgtatattctaggatacagg 878 Query: 120 tttggtacaaaactgcaaactgcttggcaaaaccctgaaatgtgacaga 168 ||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 877 tttggtacaaaactgcaaactgcttagcaaaaccctgaaatgtggcaga 829
>dbj|AK099850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110C10, full insert sequence Length = 1607 Score = 468 bits (236), Expect = e-128 Identities = 365/408 (89%) Strand = Plus / Minus Query: 277 tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 336 |||||||||||| || |||||||| || |||||||| |||||||||| || |||||||| Sbjct: 1327 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 1268 Query: 337 ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagcccgagggacaac 396 ||||||||||||||| ||||||||||| | ||||||||| || ||||| ||||||||||| Sbjct: 1267 ctggtccatgaggactaatgcggccatggactccaccatcggcacagcgcgagggacaac 1208 Query: 397 acatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcccttgtcacagt 456 ||||||||| ||||| ||||||| | ||| || | ||||||||| ||||||| ||||| Sbjct: 1207 acatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcccttgaaacagt 1148 Query: 457 attttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtttc 516 || ||| |||||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct: 1147 atgttgtttcttcccaatagtcgcggttggcttgaaagctactttgaagtatataatttc 1088 Query: 517 accatttgatatcccgccctgtacaccgcccgagcgattggttcgtgttctcacatttcc 576 ||||||||||||||| ||||| |||||||| || ||||| |||| ||||||||||||||| Sbjct: 1087 accatttgatatccctccctgcacaccgcctgaacgattagttcttgttctcacatttcc 1028 Query: 577 accctcatccatatagaactcatcgttatgctcacttccagttaggtcagtacctgcaaa 636 | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 1027 agcctcatccatatagaactcatcattatgctcacttccagtgtagtcagtacctgcaaa 968 Query: 637 tccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagc 684 |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 967 tccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagc 920
>gb|AY105171.1| Zea mays PCO087106 mRNA sequence Length = 1626 Score = 198 bits (100), Expect = 2e-47 Identities = 322/396 (81%) Strand = Plus / Minus Query: 299 agcgggaacatctcgcattgagcaacatgtgccatcagctggtccatgaggaccaatgcg 358 |||| |||||||||||| ||||| || || |||||||||||||||||||||||||| ||| Sbjct: 1331 agcgcgaacatctcgcactgagccacgtgcgccatcagctggtccatgaggaccaacgcg 1272 Query: 359 gccatcgtctccaccattggaacagcccgagggacaacacatgggtcatggcgacccctt 418 ||||| | ||||||| |||||||| |||||| | || |||||||||||||| || ||| Sbjct: 1271 gccatggattccaccacaggaacagctcgaggggcgacgcatgggtcatggcgccctctt 1212 Query: 419 gtcagaagctcgatatcctcatgatcccttgtcacagtattttgcttcttcccaatagtt 478 | |||||||| | | || | | ||||||| ||| || || || ||| ||| |||| | Sbjct: 1211 gctagaagctcaacgttctgacgctcccttgacacggtgttctgtttcaccccgatagat 1152 Query: 479 gctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatcccgccctgt 538 | ||| ||||| ||||| |||||||||| | | ||| |||| |||||||| ||||| Sbjct: 1151 ggtgtcggcttaaaagcaactttgaagtgcacaatctcaacattcgatatccctccctgc 1092 Query: 539 acaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatatagaactca 598 ||||| ||||||||||| || ||||| || ||| ||||| ||| ||||||||| |||||| Sbjct: 1091 acaccacccgagcgattagtccgtgtcctgacacttccagccttatccatataaaactca 1032 Query: 599 tcgttatgctcacttccagttaggtcagtacctgcaaatccactaccgatctcaaacccc 658 || |||||||||||||| || | ||| || || || ||||| || || ||||| ||||| Sbjct: 1031 tcattatgctcacttcctgtcaagtcggtcccggcgaatccgctgccaatctcgaacccg 972 Query: 659 ttgcttgcaggaagagaaagcatagcctttgccagt 694 ||||| ||||||| |||||||||||| ||||||||| Sbjct: 971 ttgctcgcaggaatagaaagcatagcttttgccagt 936
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 117 bits (59), Expect = 5e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 534 cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 593 |||| |||||||| || ||||| |||| |||||||||||||||| ||||||||||||||| Sbjct: 8149872 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 8149931 Query: 594 actcatcgttatgctcacttccagttaggtcagtacctg 632 ||||||| ||||||||||||||||| ||||||||||| Sbjct: 8149932 actcatcattatgctcacttccagtgtagtcagtacctg 8149970 Score = 111 bits (56), Expect = 3e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 277 tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 336 |||||||||||| || |||||||| || |||||||| |||||||||| || |||||||| Sbjct: 8148971 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 8149030 Query: 337 ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 384 ||||||||||||||| ||||||||||| | ||||||||| || ||||| Sbjct: 8149031 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 8149078 Score = 107 bits (54), Expect = 5e-20 Identities = 57/58 (98%) Strand = Plus / Plus Query: 627 tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagc 684 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 8150073 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagc 8150130 Score = 97.6 bits (49), Expect = 5e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 469 cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 528 ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 8149667 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 8149726 Query: 529 cccgccctg 537 ||| ||||| Sbjct: 8149727 ccctccctg 8149735 Score = 63.9 bits (32), Expect = 7e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 386 cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 445 |||||||||||||||||||| ||||| ||||||| | ||| || | ||||||||| ||| Sbjct: 8149318 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 8149377 Query: 446 cttgtcacagtattttgcttcttc 469 |||| ||||||| ||| |||||| Sbjct: 8149378 cttgaaacagtatgttgtttcttc 8149401
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 117 bits (59), Expect = 5e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 534 cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 593 |||| |||||||| || ||||| |||| |||||||||||||||| ||||||||||||||| Sbjct: 8147707 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 8147766 Query: 594 actcatcgttatgctcacttccagttaggtcagtacctg 632 ||||||| ||||||||||||||||| ||||||||||| Sbjct: 8147767 actcatcattatgctcacttccagtgtagtcagtacctg 8147805 Score = 111 bits (56), Expect = 3e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 277 tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 336 |||||||||||| || |||||||| || |||||||| |||||||||| || |||||||| Sbjct: 8146806 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 8146865 Query: 337 ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 384 ||||||||||||||| ||||||||||| | ||||||||| || ||||| Sbjct: 8146866 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 8146913 Score = 107 bits (54), Expect = 5e-20 Identities = 57/58 (98%) Strand = Plus / Plus Query: 627 tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagc 684 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 8147908 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagc 8147965 Score = 97.6 bits (49), Expect = 5e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 469 cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 528 ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 8147502 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 8147561 Query: 529 cccgccctg 537 ||| ||||| Sbjct: 8147562 ccctccctg 8147570 Score = 63.9 bits (32), Expect = 7e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 386 cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 445 |||||||||||||||||||| ||||| ||||||| | ||| || | ||||||||| ||| Sbjct: 8147153 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 8147212 Query: 446 cttgtcacagtattttgcttcttc 469 |||| ||||||| ||| |||||| Sbjct: 8147213 cttgaaacagtatgttgtttcttc 8147236
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 117 bits (59), Expect = 5e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 534 cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 593 |||| |||||||| || ||||| |||| |||||||||||||||| ||||||||||||||| Sbjct: 81302 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 81361 Query: 594 actcatcgttatgctcacttccagttaggtcagtacctg 632 ||||||| ||||||||||||||||| ||||||||||| Sbjct: 81362 actcatcattatgctcacttccagtgtagtcagtacctg 81400 Score = 111 bits (56), Expect = 3e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 277 tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 336 |||||||||||| || |||||||| || |||||||| |||||||||| || |||||||| Sbjct: 80401 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 80460 Query: 337 ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 384 ||||||||||||||| ||||||||||| | ||||||||| || ||||| Sbjct: 80461 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 80508 Score = 107 bits (54), Expect = 5e-20 Identities = 57/58 (98%) Strand = Plus / Plus Query: 627 tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagc 684 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 81503 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagc 81560 Score = 97.6 bits (49), Expect = 5e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 469 cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 528 ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 81097 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 81156 Query: 529 cccgccctg 537 ||| ||||| Sbjct: 81157 ccctccctg 81165 Score = 63.9 bits (32), Expect = 7e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 386 cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 445 |||||||||||||||||||| ||||| ||||||| | ||| || | ||||||||| ||| Sbjct: 80748 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 80807 Query: 446 cttgtcacagtattttgcttcttc 469 |||| ||||||| ||| |||||| Sbjct: 80808 cttgaaacagtatgttgtttcttc 80831
>gb|DQ075204.1| Glycine max chorismate synthase mRNA, complete cds Length = 1485 Score = 67.9 bits (34), Expect = 4e-08 Identities = 136/170 (80%) Strand = Plus / Minus Query: 449 gtcacagtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtat 508 ||||||||||| |||||||| ||||| |||| ||||||||||||||||| | | | | Sbjct: 1174 gtcacagtattgtgcttctttccaattgttgatgttggcttgaaagctattctcatatta 1115 Query: 509 atggtttcaccatttgatatcccgccctgtacaccgcccgagcgattggttcgtgttctc 568 ||| |||| ||||| || || || ||||||| || || |||||||| |||| |||||| Sbjct: 1114 atgatttccccattggaaattccaccctgtatcccaccagagcgatttgttcttgttctt 1055 Query: 569 acatttccaccctcatccatatagaactcatcgttatgctcacttccagt 618 |||||| ||||| |||||||||||||| ||||| ||||| ||||| Sbjct: 1054 gtgtttccatgttcatctatatagaactcatcattatgttcactcccagt 1005
>emb|X60544.1|CSCHOSYN C.sempervirens mRNA for chorismate synthase precursor Length = 1754 Score = 67.9 bits (34), Expect = 4e-08 Identities = 106/130 (81%) Strand = Plus / Minus Query: 368 tccaccattggaacagcccgagggacaacacatgggtcatggcgaccccttgtcagaagc 427 ||||||||||||||||| ||||| |||||||| ||||| |||||||| | || | || Sbjct: 1369 tccaccattggaacagctcgaggtacaacacaagggtcgtggcgaccacgtgctatgagt 1310 Query: 428 tcgatatcctcatgatcccttgtcacagtattttgcttcttcccaatagttgctgttggc 487 || || || ||| | || || ||||||||||| |||||||| ||||| || | ||| ||| Sbjct: 1309 tcaatctcttcacgttctctggtcacagtattctgcttctttccaattgtagatgtcggc 1250 Query: 488 ttgaaagcta 497 |||||||||| Sbjct: 1249 ttgaaagcta 1240
>emb|Z21791.1|LECHOSYNB L.esculentum chorismate synthase 2 precursor Length = 1802 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 581 tcatccatatagaactcatcgttatgctcacttccagttaggtcagtacctgcaaatcca 640 ||||||||| |||||||||| ||||||||||| ||||| | | |||||||||||| ||| Sbjct: 1003 tcatccataaagaactcatcattatgctcactgccagtcatgaaagtacctgcaaagcca 944 Query: 641 ctaccgatctcaaacccctt 660 || || | |||||| ||||| Sbjct: 943 cttccaaactcaaaaccctt 924
>ref|NM_103779.3| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144) transcript variant AT1G48850.1 mRNA, complete cds Length = 1953 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 455 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1228 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1169 Query: 515 tcaccatttgatatcccgccctg 537 ||||||||||| ||||| ||||| Sbjct: 1168 tcaccatttgagatccctccctg 1146
>gb|BT015785.1| Arabidopsis thaliana At1g48850 mRNA, complete cds Length = 1311 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 455 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1094 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1035 Query: 515 tcaccatttgatatcccgccctg 537 ||||||||||| ||||| ||||| Sbjct: 1034 tcaccatttgagatccctccctg 1012
>gb|AY057519.1| Arabidopsis thaliana At1g48850/T24P22_3 mRNA, complete cds Length = 1603 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 455 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1216 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1157 Query: 515 tcaccatttgatatcccgccctg 537 ||||||||||| ||||| ||||| Sbjct: 1156 tcaccatttgagatccctccctg 1134
>emb|BX818532.1|CNS0ACMM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZB05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1494 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 455 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1169 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1110 Query: 515 tcaccatttgatatcccgccctg 537 ||||||||||| ||||| ||||| Sbjct: 1109 tcaccatttgagatccctccctg 1087
>emb|BX815746.1|CNS0ACWT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS8ZG07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1488 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 455 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1156 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1097 Query: 515 tcaccatttgatatcccgccctg 537 ||||||||||| ||||| ||||| Sbjct: 1096 tcaccatttgagatccctccctg 1074
>dbj|AK220709.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-03-E08 Length = 460 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 455 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 87 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 28 Query: 515 tcaccatttgatatcccgccct 536 ||||||||||| ||||| |||| Sbjct: 27 tcaccatttgagatccctccct 6
>ref|NM_001036080.1| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144) transcript variant AT1G48850.2 mRNA, complete cds Length = 2020 Score = 56.0 bits (28), Expect = 2e-04 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand = Plus / Minus Query: 455 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 514 ||||||||||||| ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1226 gtattttgcttct--ccaattgttgatgttggcttgaaggctactctcatgtttattatt 1169 Query: 515 tcaccatttgatatcccgccctg 537 ||||||||||| ||||| ||||| Sbjct: 1168 tcaccatttgagatccctccctg 1146
>gb|DQ166526.1| Fagus sylvatica putative chorismate synthase mRNA, complete cds Length = 1643 Score = 50.1 bits (25), Expect = 0.010 Identities = 73/89 (82%) Strand = Plus / Minus Query: 472 aatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatccc 531 |||||| ||||||||||||||||||||| | | | |||| ||| |||||||| || || Sbjct: 1134 aatagtagctgttggcttgaaagctactctcatatttatgacttccccatttgagattcc 1075 Query: 532 gccctgtacaccgcccgagcgattggttc 560 ||||||| ||||| ||||| ||||||| Sbjct: 1074 tccctgtatcccgccagagcggttggttc 1046
>ref|NM_001036081.1| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144) transcript variant AT1G48850.3 mRNA, complete cds Length = 2020 Score = 48.1 bits (24), Expect = 0.039 Identities = 57/68 (83%) Strand = Plus / Minus Query: 470 ccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatc 529 ||||| |||| |||||||||||| |||||| | | || ||| ||||||||||||| ||| Sbjct: 1213 ccaattgttgatgttggcttgaaggctactctcatgtttattatttcaccatttgagatc 1154 Query: 530 ccgccctg 537 || ||||| Sbjct: 1153 cctccctg 1146
>emb|BX814847.1|CNS0ACYT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS10ZH06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1538 Score = 48.1 bits (24), Expect = 0.039 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 455 gtattttgcttcttcccaatagttgct-gttggcttgaaagctactttgaagtatatggt 513 |||||||||||| | ||||| |||| | ||||||||||| |||||| | | || ||| | Sbjct: 1229 gtattttgcttccttccaattgttgattgttggcttgaaggctactctcatgtttattat 1170 Query: 514 ttcaccatttgatatcccgccctg 537 |||||||||||| ||||| ||||| Sbjct: 1169 ttcaccatttgagatccctccctg 1146
>gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24P22 genomic sequence, complete sequence Length = 18062 Score = 48.1 bits (24), Expect = 0.039 Identities = 60/72 (83%) Strand = Plus / Minus Query: 470 ccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatc 529 ||||| |||| |||||||||||| |||||| | | || ||| ||||||||||||| ||| Sbjct: 10181 ccaattgttgatgttggcttgaaggctactctcatgtttattatttcaccatttgagatc 10122 Query: 530 ccgccctgtaca 541 || |||| |||| Sbjct: 10121 cctccctataca 10110
>emb|Z21796.1|LECHOSYNA L.esculentum chorismate synthase 1 precursor Length = 1701 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Minus Query: 371 accattggaacagcccgagggacaacacatgggtcatggcgacccct 417 |||||||||||||| || || || ||||| || |||||||||||||| Sbjct: 1223 accattggaacagctcggggaaccacacaaggatcatggcgacccct 1177 Score = 46.1 bits (23), Expect = 0.16 Identities = 35/39 (89%) Strand = Plus / Minus Query: 580 ctcatccatatagaactcatcgttatgctcacttccagt 618 ||||||||||||||| ||||| |||||||| || ||||| Sbjct: 1014 ctcatccatatagaattcatcattatgctcgctaccagt 976
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 643 accgatctcaaaccccttgct 663 ||||||||||||||||||||| Sbjct: 355403 accgatctcaaaccccttgct 355423
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 agggcgaggttcagcgggaa 306 |||||||||||||||||||| Sbjct: 547718 agggcgaggttcagcgggaa 547699
>gb|BC045246.1| Xenopus laevis similar to golgi SNAP receptor complex member 1, mRNA (cDNA clone IMAGE:5542326), partial cds Length = 2311 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tcttcccaatagttgctgtt 484 |||||||||||||||||||| Sbjct: 42 tcttcccaatagttgctgtt 23
>emb|CR388194.8| Zebrafish DNA sequence from clone DKEY-20H20 in linkage group 1, complete sequence Length = 75231 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 tccatatagaactcatcgtt 603 |||||||||||||||||||| Sbjct: 60161 tccatatagaactcatcgtt 60142
>gb|AC123817.4| Mus musculus BAC clone RP24-255D13 from chromosome 9, complete sequence Length = 169614 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 aatgtgacagacagatgaaa 177 |||||||||||||||||||| Sbjct: 55703 aatgtgacagacagatgaaa 55684
>emb|AL353652.17| Human DNA sequence from clone RP11-279F15 on chromosome 13 Contains a CpG island, complete sequence Length = 126837 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 gtcacagtattttgcttctt 468 |||||||||||||||||||| Sbjct: 19843 gtcacagtattttgcttctt 19824
>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5 Length = 349742 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 470 ccaatagttgctgttggcttgaaagcta 497 ||||||||||||||||| || ||||||| Sbjct: 218924 ccaatagttgctgttggtttaaaagcta 218897
>gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosome ul, complete sequence Length = 205759 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 tgcaggaagagaaagcatag 683 |||||||||||||||||||| Sbjct: 167906 tgcaggaagagaaagcatag 167887
>gb|AC149134.2| Medicago truncatula, complete sequence Length = 133336 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tactttgaagtatatggttt 515 |||||||||||||||||||| Sbjct: 132148 tactttgaagtatatggttt 132129
>gb|AC154567.3| Mus musculus BAC clone RP23-245F1 from chromosome 14, complete sequence Length = 155103 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 ttctcacatttccaccctca 583 |||||||||||||||||||| Sbjct: 54830 ttctcacatttccaccctca 54811
>gb|AY884246.1| Heterocapsa triquetra chloroplast glyceraldehyde-3-phosphate dehydrogenase (GAPDH1) mRNA, partial cds; nuclear gene for chloroplast product Length = 1176 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 tccaaggcaggcatcatgct 235 |||||||||||||||||||| Sbjct: 1129 tccaaggcaggcatcatgct 1148
>dbj|AB106700.1| Heterocapsa triquetra GapC1 mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds Length = 901 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 tccaaggcaggcatcatgct 235 |||||||||||||||||||| Sbjct: 854 tccaaggcaggcatcatgct 873
>emb|BX005386.8| Zebrafish DNA sequence from clone DKEY-21M1 in linkage group 1, complete sequence Length = 170040 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 tccatatagaactcatcgtt 603 |||||||||||||||||||| Sbjct: 124206 tccatatagaactcatcgtt 124187
>gb|AY861482.1| Malus x domestica clone MS06C09 microsatellite sequence Length = 465 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 470 ccaatagttgctgttggcttgaaagcta 497 |||||||| |||||||||||||| |||| Sbjct: 57 ccaatagtagctgttggcttgaaggcta 30 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,720,669 Number of Sequences: 3902068 Number of extensions: 5720669 Number of successful extensions: 93406 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93226 Number of HSP's gapped (non-prelim): 179 length of query: 699 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 676 effective length of database: 17,143,297,704 effective search space: 11588869247904 effective search space used: 11588869247904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)