>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  154 bits (388), Expect = 2e-37
 Identities = 80/139 (57%), Positives = 93/139 (66%)
 Frame = -3

Query: 546 MAXSTMAFMPLKPSPSXFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQXSQPFGPGXGLEL 367
           M+   MA + LKPS S     S+L  ++P  R S   +++KKAKKVQ +QP+GPG G+  
Sbjct: 1   MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLV-IVAKKAKKVQTAQPYGPGGGVAF 59

Query: 366 KDGVDASGXPAKGKGVYQFASKYGANVDGYSPIYNPXEWSPSGDYYAGXKTGLLLWVXXX 187
           K+GVDASG  AKGKGVYQFA KYGANVDGYSPIY P EWSPSGD Y G KTGL LW    
Sbjct: 60  KEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTL 119

Query: 186 XXXXXXXXXLVXNTSALAS 130
                    LV +TSALAS
Sbjct: 120 AGILLGGALLVYSTSALAS 138

>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  135 bits (339), Expect = 1e-31
 Identities = 70/139 (50%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
 Frame = -3

Query: 546 MAXSTMAFMPLKPSPSXFSGHSQLQRIQPFTRSS-SFRVMSKKAKKVQXSQPFGPGXGLE 370
           MA S M+ + LKPS       S ++ +   +RSS SF V +   KK++  +P G G G++
Sbjct: 1   MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60

Query: 369 LKDGVDASGXPAKGKGVYQFASKYGANVDGYSPIYNPXEWSPSGDYYAGXKTGLLLWVXX 190
           L+DGVD+SG    GKGVYQF  KYGANVDGYSPIYN  EW+P+GD YAG  TGLL+W   
Sbjct: 61  LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120

Query: 189 XXXXXXXXXXLVXNTSALA 133
                     LV NTSALA
Sbjct: 121 LAGLLAGGALLVYNTSALA 139

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  126 bits (316), Expect = 5e-29
 Identities = 68/142 (47%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
 Frame = -3

Query: 546 MAXSTMAFMPLKPS----PSXFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQXSQPFGPGX 379
           MA + M+ + LKP+     +   G   L R      SSSF+V++   KK++  +P+G   
Sbjct: 1   MASTVMSSLSLKPTFTLEKTSVKGLPSLAR-----SSSSFKVVASGVKKLKTDKPYGING 55

Query: 378 GLELKDGVDASGXPAKGKGVYQFASKYGANVDGYSPIYNPXEWSPSGDYYAGXKTGLLLW 199
            + L+DGVDASG   KGKGVYQ+  KYGANVDGYSPIYN  EWSPSGD Y G  TGL +W
Sbjct: 56  SMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIW 115

Query: 198 VXXXXXXXXXXXXLVXNTSALA 133
                        LV NTSALA
Sbjct: 116 AVTLVGILAGGALLVYNTSALA 137

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  125 bits (315), Expect = 7e-29
 Identities = 66/131 (50%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
 Frame = -3

Query: 522 MPLKPSPSXFSGHSQLQRIQPFTRSSS-FRVMSKKAKKVQXSQPFGPGXGLELKDGVDAS 346
           M LKP+P      + ++ +    RSSS FRV +   KK++  +P+G    + L+DGVDAS
Sbjct: 6   MSLKPAPFSVE-KTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDAS 64

Query: 345 GXPAKGKGVYQFASKYGANVDGYSPIYNPXEWSPSGDYYAGXKTGLLLWVXXXXXXXXXX 166
           G   KGKGVYQF  KYGANVDGYSPIYN  +WSPSGD Y G  TGL +W           
Sbjct: 65  GRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGG 124

Query: 165 XXLVXNTSALA 133
             LV NTSALA
Sbjct: 125 ALLVFNTSALA 135

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  125 bits (315), Expect = 7e-29
 Identities = 67/139 (48%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
 Frame = -3

Query: 546 MAXSTMAFMPLKPSPSXFSGHSQLQRIQPFTRSSS-FRVMSKKAKKVQXSQPFGPGXGLE 370
           MA + M+ + LKP+ +       ++ +   TRSSS F+V++   KK++  +P+G    + 
Sbjct: 1   MASTVMSSLSLKPTFTLEK--ISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMA 58

Query: 369 LKDGVDASGXPAKGKGVYQFASKYGANVDGYSPIYNPXEWSPSGDYYAGXKTGLLLWVXX 190
           L+DGVDASG   KGKGVYQ+  KYGANVDGYSPIYN  EWSPSGD Y G  TGL +W   
Sbjct: 59  LRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118

Query: 189 XXXXXXXXXXLVXNTSALA 133
                     LV NTSALA
Sbjct: 119 LLGILAGGALLVYNTSALA 137

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  120 bits (300), Expect = 4e-27
 Identities = 68/144 (47%), Positives = 82/144 (56%), Gaps = 6/144 (4%)
 Frame = -3

Query: 546 MAXSTM-AFMPLKPSPSXFS-----GHSQLQRIQPFTRSSSFRVMSKKAKKVQXSQPFGP 385
           MA S M + + LKP+          G   L R  P    SSFR+++   KK++  +PFG 
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASP----SSFRIVASGVKKIKTDKPFGV 56

Query: 384 GXGLELKDGVDASGXPAKGKGVYQFASKYGANVDGYSPIYNPXEWSPSGDYYAGXKTGLL 205
              ++L+DGVDASG   KG GVY+F  KYGANVDGYSPIYN  EWS SGD Y G  TGL 
Sbjct: 57  NGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLA 116

Query: 204 LWVXXXXXXXXXXXXLVXNTSALA 133
           +W             LV NTSALA
Sbjct: 117 IWAVTLAGILAGGALLVYNTSALA 140

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  116 bits (291), Expect = 4e-26
 Identities = 65/144 (45%), Positives = 83/144 (57%), Gaps = 6/144 (4%)
 Frame = -3

Query: 546 MAXSTM-AFMPLKPS-----PSXFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQXSQPFGP 385
           MA S M + + LKP+      +   G   L R +P     SF++++   KK++  +PFG 
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARP-----SFKIVASGVKKIKTDKPFGI 55

Query: 384 GXGLELKDGVDASGXPAKGKGVYQFASKYGANVDGYSPIYNPXEWSPSGDYYAGXKTGLL 205
              ++L+DGVDASG   KG GVY++  KYGANVDGYSPIYN  EWS SGD Y G  TGL 
Sbjct: 56  NGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLA 115

Query: 204 LWVXXXXXXXXXXXXLVXNTSALA 133
           +W             LV NTSALA
Sbjct: 116 IWAVTLAGILAGGALLVYNTSALA 139

>SORC2_MOUSE (Q9EPR5) VPS10 domain-containing receptor SorCS2 precursor|
          Length = 1159

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 23/79 (29%), Positives = 32/79 (40%)
 Frame = -3

Query: 558 LLSFMAXSTMAFMPLKPSPSXFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQXSQPFGPGX 379
           LL  +  +    M   P P       Q+ R+ P  R+ S     +K  + + S+P  PG 
Sbjct: 38  LLLLVLVAACGAMGRSPQPGRQGPGVQITRLLPAGRTESG---DRKDPQARESEPSVPGL 94

Query: 378 GLELKDGVDASGXPAKGKG 322
           G     G    G PA GKG
Sbjct: 95  GPGSASGPSTDGAPAPGKG 113

>DCC_HUMAN (P43146) Netrin receptor DCC precursor (Tumor suppressor protein DCC)|
            (Colorectal cancer suppressor)
          Length = 1447

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 24/81 (29%), Positives = 30/81 (37%)
 Frame = +2

Query: 149  LXTRRAPPSRIPARVATQSNNPVFXPA**SPLGDHSXGLYIGLYPSTFAPYLLANW*TPF 328
            L  RRAP +++   +  QSNNP    A   P+       Y G+ PS              
Sbjct: 1224 LAARRAPRAKLMIPMDAQSNNPAVVSA--IPVPTLESAQYPGILPS-------------- 1267

Query: 329  PLAGLPDASTPSFNSNPXPGP 391
            P  G P    P F   P P P
Sbjct: 1268 PTCGYPH---PQFTLRPVPFP 1285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,837,393
Number of Sequences: 219361
Number of extensions: 1568569
Number of successful extensions: 3828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3826
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)