ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7j06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 272 1e-69
2emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 180 3e-42
3ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 131 3e-27
4dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
5dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
7dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
8emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 92 2e-15
9emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 64 6e-07
10dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
11gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 56 1e-04
12gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 50 0.008
13gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 50 0.008
14emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 48 0.033
15emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 48 0.033
16emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 48 0.033
17ref|XM_430158.1| PREDICTED: Gallus gallus hypothetical gene supp... 44 0.51
18emb|CR387115.1| Gallus gallus finished cDNA, clone ChEST474m11 44 0.51
19emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide p... 44 0.51
20ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 ... 42 2.0
21gb|AY096544.1| Arabidopsis thaliana putative photosystem II poly... 42 2.0
22gb|AY070103.1| Arabidopsis thaliana putative photosystem II poly... 42 2.0
23emb|X55970.1|ATPSII10 A.thaliana gene for photosystem II 10 kDa ... 42 2.0
24emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Co... 42 2.0
25emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Co... 42 2.0
26emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Co... 42 2.0
27emb|BX818253.1|CNS0AAW5 Arabidopsis thaliana Full-length cDNA Co... 42 2.0
28gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete ... 42 2.0
29emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 6... 42 2.0
30gb|AC002986.1|YUP8H12R Arabidopsis thaliana chromosome 1 YAC YUP... 42 2.0
31gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 8.0
32emb|CT025679.5| Mouse DNA sequence from clone RP24-296K22 on chr... 40 8.0
33gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 8.0
34gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 8.0
35gb|AC092554.3| Papio anubis clone RP41-414G17, complete sequence 40 8.0
36dbj|AB053120.1| Mus musculus DNA, proteasome activator genes, co... 40 8.0
37gb|AC013286.9| Homo sapiens chromosome 10 clone RP11-369F10, com... 40 8.0
38gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome... 40 8.0 
>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  272 bits (137), Expect = 1e-69
 Identities = 269/315 (85%)
 Strand = Plus / Minus

                                                                       
Query: 127 tcaagaagccaaagcactagtattgtnaacaagaagagcaccacccagcagaattccagc 186
           |||||||||||| |||||||||||||  ||||||||||||||| ||||||||||||||| 
Sbjct: 405 tcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccaga 346

                                                                       
Query: 187 aagagtagccacccagagcaacaaccctgtctttnctcccgcatagtaatcaccacttgg 246
           ||||||  |  ||||||||||||||||||||||| |||| | |||   ||||||||||||
Sbjct: 345 aagagtgactgcccagagcaacaaccctgtctttcctccagtataaacatcaccacttgg 286

                                                                       
Query: 247 agaccattcttntgggttatatatcgggctgtacccatcaacatttgctccgtacttgct 306
            |||||||| | |||||||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct: 285 tgaccattcctctgggttatatattgggctgtatccatcaacattagctccatacttgct 226

                                                                       
Query: 307 ggcaaactggtagacgcccttccccttggctggncttccagatgcatcaacgccatcttt 366
           ||||||||||||||| || |||||||||  ||| ||||| || || ||||| || |||||
Sbjct: 225 ggcaaactggtagacccctttccccttgattggccttccggacgcgtcaacaccgtcttt 166

                                                                       
Query: 367 caattccaatcctnccccaggcccgaaaggctgagaagnctgaactttctttgccttttt 426
           ||  | |  |||| | ||||| |||||||||||||||| ||| |  |||||||| |||||
Sbjct: 165 caggttcggtcctcctccaggtccgaaaggctgagaagtctggatcttctttgctttttt 106

                          
Query: 427 ggacattactctgaa 441
           || ||||||||||||
Sbjct: 105 ggccattactctgaa 91
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>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  180 bits (91), Expect = 3e-42
 Identities = 201/239 (84%)
 Strand = Plus / Minus

                                                                       
Query: 122 aggcttcaagaagccaaagcactagtattgtnaacaagaagagcaccacccagcagaatt 181
           |||||||| |||||||| || |||||| |||  |||||||||||||| ||||||||||||
Sbjct: 448 aggcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaatt 389

                                                                       
Query: 182 ccagcaagagtagccacccagagcaacaaccctgtctttnctcccgcatagtaatcacca 241
           |||||||||||  |  ||||||| |||| ||| |||||| ||||  ||||    || |||
Sbjct: 388 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 329

                                                                       
Query: 242 cttggagaccattcttntgggttatatatcgggctgtacccatcaacatttgctccgtac 301
           ||||||||||| |||| |||  | ||||| |||||||||||||||||||||||||| |||
Sbjct: 328 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 269

                                                                      
Query: 302 ttgctggcaaactggtagacgcccttccccttggctggncttccagatgcatcaacgcc 360
           |||  |||||||||||| || |||||||||||||||   |||||||| ||||| |||||
Sbjct: 268 ttgtcggcaaactggtaaacacccttccccttggctacccttccagacgcatcgacgcc 210
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  131 bits (66), Expect = 3e-27
 Identities = 179/218 (82%)
 Strand = Plus / Minus

                                                                       
Query: 140 gcactagtattgtnaacaagaagagcaccacccagcagaattccagcaagagtagccacc 199
           |||||||| ||||  ||||||| ||| || || |  |||||||||||||||||     ||
Sbjct: 470 gcactagtgttgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcc 411

                                                                       
Query: 200 cagagcaacaaccctgtctttnctcccgcatagtaatcaccacttggagaccattcttnt 259
           ||||| |  || |||| |||| ||||  |||||  ||||||| ||| ||||||||||| |
Sbjct: 410 cagagaagtaaacctgcctttcctccaacatagacatcaccagttgaagaccattcttct 351

                                                                       
Query: 260 gggttatatatcgggctgtacccatcaacatttgctccgtacttgctggcaaactggtag 319
           ||| ||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||| 
Sbjct: 350 ggggtatatattgggctgtacccatcaacatttgctccatacttgttggaaaactggtaa 291

                                                 
Query: 320 acgcccttccccttggctggncttccagatgcatcaac 357
           |  ||||| |||||||||   |||||||||||||||||
Sbjct: 290 agaccctttcccttggctacccttccagatgcatcaac 253
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  131 bits (66), Expect = 3e-27
 Identities = 179/218 (82%)
 Strand = Plus / Minus

                                                                       
Query: 140 gcactagtattgtnaacaagaagagcaccacccagcagaattccagcaagagtagccacc 199
           |||||||| ||||  ||||||| ||| || || |  |||||||||||||||||     ||
Sbjct: 470 gcactagtgttgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcc 411

                                                                       
Query: 200 cagagcaacaaccctgtctttnctcccgcatagtaatcaccacttggagaccattcttnt 259
           ||||| |  || |||| |||| ||||  |||||  ||||||| ||| ||||||||||| |
Sbjct: 410 cagagaagtaaacctgcctttcctccaacatagacatcaccagttgaagaccattcttct 351

                                                                       
Query: 260 gggttatatatcgggctgtacccatcaacatttgctccgtacttgctggcaaactggtag 319
           ||| ||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||| 
Sbjct: 350 ggggtatatattgggctgtacccatcaacatttgctccatacttgttggaaaactggtaa 291

                                                 
Query: 320 acgcccttccccttggctggncttccagatgcatcaac 357
           |  ||||| |||||||||   |||||||||||||||||
Sbjct: 290 agaccctttcccttggctacccttccagatgcatcaac 253
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  129 bits (65), Expect = 1e-26
 Identities = 108/123 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 atcaccacttggagaccattcttntgggttatatatcgggctgtacccatcaacatttgc 294
           ||||||| ||| ||||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct: 376 atcaccagttgaagaccattcttctggggtatatattgggctgtacccatcaacatttgc 317

                                                                       
Query: 295 tccgtacttgctggcaaactggtagacgcccttccccttggctggncttccagatgcatc 354
           ||| |||||| ||| ||||||||| |  ||||| |||||||||   ||||||||||||||
Sbjct: 316 tccatacttgttggaaaactggtaaagaccctttcccttggctacccttccagatgcatc 257

              
Query: 355 aac 357
           |||
Sbjct: 256 aac 254
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  123 bits (62), Expect = 7e-25
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                           
Query: 124     gcttcaagaagccaaagcactagtattgtnaacaagaagagcaccacccagcagaattcc 183
               ||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                    
Query: 184     agcaagagtagccacccagagcaacaaccctgtcttt 220
               || ||||||  |  |||||||||||||||||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtcttt 2490026



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                         
Query: 275     ctgtacccatcaacatttgctccgtacttgctggcaaactggtagacgcccttcccct 332
               ||||| ||||||||||| ||||| ||||||||||||||||||||||| || |||||||
Sbjct: 2489753 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 2489696



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                           
Query: 275     ctgtacccatcaacatttgctccgtacttgctggcaaactggta 318
               ||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 2487136 ctgtacccatcaacatttgctccatacttgttggaaaactggta 2487093



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 389     ccgaaaggctgagaagnctgaactttctttgcctttttggacattactctgaa 441
               |||||||||||||||| ||| |  |||||||| ||||||| ||||||||||||
Sbjct: 2489327 ccgaaaggctgagaagtctggatcttctttgcttttttggccattactctgaa 2489275



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                         
Query: 235     atcaccacttggagaccattcttntgggttatatatcgggct 276
               |||||||||||| |||||||| | |||||||||||| |||||
Sbjct: 2489892 atcaccacttggtgaccattcctctgggttatatattgggct 2489851



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 235     atcaccacttggagaccattcttntgggttatatatcgggctgta 279
               ||||||| ||| ||||||||||| |||| ||||||| ||||||||
Sbjct: 2487419 atcaccagttgaagaccattcttctggggtatatattgggctgta 2487375
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  123 bits (62), Expect = 7e-25
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                         
Query: 124   gcttcaagaagccaaagcactagtattgtnaacaagaagagcaccacccagcagaattcc 183
             ||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                  
Query: 184   agcaagagtagccacccagagcaacaaccctgtcttt 220
             || ||||||  |  |||||||||||||||||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtcttt 55006



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 275   ctgtacccatcaacatttgctccgtacttgctggcaaactggtagacgcccttcccct 332
             ||||| ||||||||||| ||||| ||||||||||||||||||||||| || |||||||
Sbjct: 54733 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 54676



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 275   ctgtacccatcaacatttgctccgtacttgctggcaaactggta 318
             ||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 52116 ctgtacccatcaacatttgctccatacttgttggaaaactggta 52073



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 389   ccgaaaggctgagaagnctgaactttctttgcctttttggacattactctgaa 441
             |||||||||||||||| ||| |  |||||||| ||||||| ||||||||||||
Sbjct: 54307 ccgaaaggctgagaagtctggatcttctttgcttttttggccattactctgaa 54255



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 235   atcaccacttggagaccattcttntgggttatatatcgggct 276
             |||||||||||| |||||||| | |||||||||||| |||||
Sbjct: 54872 atcaccacttggtgaccattcctctgggttatatattgggct 54831



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 235   atcaccacttggagaccattcttntgggttatatatcgggctgta 279
             ||||||| ||| ||||||||||| |||| ||||||| ||||||||
Sbjct: 52399 atcaccagttgaagaccattcttctggggtatatattgggctgta 52355
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 86/100 (86%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                       
Query: 239 ccacttggagaccattcttntgggttatatatcgggctgtacccatcaacatttgctccg 298
           |||||||||||||| |||| |||  | ||||| |||||||||||||||||||||||||| 
Sbjct: 320 ccacttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctcca 261

                                                   
Query: 299 tacttg-ctggcaaactggtagacgcccttccccttggct 337
           |||||| | |   |||||||| || |||||||||||||||
Sbjct: 260 tacttgtcggnhdaactggtaaacacccttccccttggct 221
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 atcaccacttggagaccattcttntgggttatatatcgggctgtacccatcaacatttgc 294
           |||||||||||||||||| || | || ||| || || |||||||| ||||||||||||||
Sbjct: 328 atcaccacttggagaccagtcatctgtgttgtagatggggctgtatccatcaacatttgc 269

              
Query: 295 tcc 297
           |||
Sbjct: 268 tcc 266
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 275   ctgtacccatcaacatttgctccgtacttgctggcaaactggta 318
             ||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 60883 ctgtacccatcaacatttgctccatacttgttggaaaactggta 60840



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 235   atcaccacttggagaccattcttntgggttatatatcgggctgta 279
             ||||||| ||| ||||||||||| |||| ||||||| ||||||||
Sbjct: 61166 atcaccagttgaagaccattcttctggggtatatattgggctgta 61122
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>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 235 atcaccacttggagaccattcttntgggttatatatcgggctgtacccatcaacatttgc 294
           |||||| ||||||||||| || | || ||| || || |||||||| ||||||||||||||
Sbjct: 183 atcaccgcttggagaccagtcatctgtgttgtagatggggctgtatccatcaacatttgc 124

              
Query: 295 tcc 297
           |||
Sbjct: 123 tcc 121
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>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 235 atcaccacttggagaccattcttntgggttatatatcgggctgtacccatcaacatttgc 294
           |||||| |||| |||||| || | || ||| || || |||||||| ||||||||||||||
Sbjct: 119 atcaccgcttgnagaccagtcatctgtgttgtagatggggctgtatccatcaacatttgc 60

              
Query: 295 tcc 297
           |||
Sbjct: 59  tcc 57
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 235 atcaccacttggagaccattcttntgggttatatatcgggctgtacccatcaacatttgc 294
           ||||||||| ||||||||||| | |||    || ||||||||||| ||||||||||||||
Sbjct: 388 atcaccactaggagaccattcgtctggtgagtagatcgggctgtagccatcaacatttgc 329



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                       
Query: 133 agccaaagcactagtattgtnaacaagaagagcaccacccagcagaattccagcaagagt 192
           |||||||||||| ||  |||  |||||||||||||| ||   ||||| ||||||||||||
Sbjct: 490 agccaaagcactggtgctgtacacaagaagagcacctccacccagaagtccagcaagagt 431
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>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 235 atcaccacttggagaccattcttntgggttatatatcgggctgtacccatcaacatttgc 294
           |||||||||||||||||| || | || ||| || || || ||||| ||||||||||| ||
Sbjct: 309 atcaccacttggagaccactcatctgtgttgtagatgggactgtatccatcaacattagc 250

              
Query: 295 tcc 297
           |||
Sbjct: 249 tcc 247
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 310 aaactggtagacgcccttccccttggctggncttccagatgcatcaacgcc 360
           ||||||||| || |||||||||||||||   |||||||| ||||| |||||
Sbjct: 247 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgcc 197
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>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 235 atcaccacttggagaccattcttntgggttatatatcgggctgtacccatcaacatttgc 294
           ||||||||||||||||||||| |  | ||| || || || ||||| ||||||||||| ||
Sbjct: 286 atcaccacttggagaccattcatccgtgttgtagatgggactgtatccatcaacattagc 227

              
Query: 295 tcc 297
           |||
Sbjct: 226 tcc 224
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>ref|XM_430158.1| PREDICTED: Gallus gallus hypothetical gene supported by CR387115
            (LOC424511), mRNA
          Length = 1430

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 407  tgaactttctttgcctttttgg 428
            ||||||||||||||||||||||
Sbjct: 1123 tgaactttctttgcctttttgg 1144
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>emb|CR387115.1| Gallus gallus finished cDNA, clone ChEST474m11
          Length = 616

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 407 tgaactttctttgcctttttgg 428
           ||||||||||||||||||||||
Sbjct: 314 tgaactttctttgcctttttgg 335
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>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II
          Length = 632

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 235 atcaccacttggagaccattcttntgggttatatatcgggctgtacccatcaacatt 291
           ||||||||||||||||||||| |  | ||| || || || ||||| |||||||||||
Sbjct: 309 atcaccacttggagaccattcatccgtgttgtagatgggactgtatccatcaacatt 253
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>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds
          Length = 647

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 133 agccaaagcactagtattgtnaacaagaagagcacc 168
           |||||||||||| || ||||  ||||||||||||||
Sbjct: 484 agccaaagcacttgtgttgtacacaagaagagcacc 449
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>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide
           (At1g79040) mRNA, complete cds
          Length = 454

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 133 agccaaagcactagtattgtnaacaagaagagcacc 168
           |||||||||||| || ||||  ||||||||||||||
Sbjct: 417 agccaaagcacttgtgttgtacacaagaagagcacc 382
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>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein
           (At1g79040) mRNA, complete cds
          Length = 645

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 133 agccaaagcactagtattgtnaacaagaagagcacc 168
           |||||||||||| || ||||  ||||||||||||||
Sbjct: 467 agccaaagcacttgtgttgtacacaagaagagcacc 432
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>emb|X55970.1|ATPSII10 A.thaliana gene for photosystem II 10 kDa polypeptide
          Length = 1388

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 133  agccaaagcactagtattgtnaacaagaagagcacc 168
            |||||||||||| || ||||  ||||||||||||||
Sbjct: 1185 agccaaagcacttgtgttgtacacaagaagagcacc 1150
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>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 133 agccaaagcactagtattgtnaacaagaagagcacc 168
           |||||||||||| || ||||  ||||||||||||||
Sbjct: 450 agccaaagcacttgtgttgtacacaagaagagcacc 415
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>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZH04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 133 agccaaagcactagtattgtnaacaagaagagcacc 168
           |||||||||||| || ||||  ||||||||||||||
Sbjct: 450 agccaaagcacttgtgttgtacacaagaagagcacc 415
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>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 588

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 133 agccaaagcactagtattgtnaacaagaagagcacc 168
           |||||||||||| || ||||  ||||||||||||||
Sbjct: 453 agccaaagcacttgtgttgtacacaagaagagcacc 418
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>emb|BX818253.1|CNS0AAW5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL6ZA08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 605

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 133 agccaaagcactagtattgtnaacaagaagagcacc 168
           |||||||||||| || ||||  ||||||||||||||
Sbjct: 454 agccaaagcacttgtgttgtacacaagaagagcacc 419
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>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 133 agccaaagcactagtattgtnaacaagaagagcacc 168
           |||||||||||| || ||||  ||||||||||||||
Sbjct: 484 agccaaagcacttgtgttgtacacaagaagagcacc 449
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>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24
            gene)
          Length = 1310

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 133  agccaaagcactagtattgtnaacaagaagagcacc 168
            |||||||||||| || ||||  ||||||||||||||
Sbjct: 1159 agccaaagcacttgtgttgtacacaagaagagcacc 1124
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>gb|AC002986.1|YUP8H12R Arabidopsis thaliana chromosome 1 YAC YUP8H12R sequence, complete
              sequence
          Length = 181925

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 133    agccaaagcactagtattgtnaacaagaagagcacc 168
              |||||||||||| || ||||  ||||||||||||||
Sbjct: 122839 agccaaagcacttgtgttgtacacaagaagagcacc 122874
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 560    ctctcgctcttcctttttcctcgt 583
              ||||||||||||||| ||||||||
Sbjct: 781319 ctctcgctcttccttgttcctcgt 781296
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>emb|CT025679.5| Mouse DNA sequence from clone RP24-296K22 on chromosome 14, complete
             sequence
          Length = 160805

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   tggagatggtttcagaggca 521
             ||||||||||||||||||||
Sbjct: 36326 tggagatggtttcagaggca 36307
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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ccagcagaattccagcaaga 190
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  ccagcagaattccagcaaga 190
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
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>gb|AC092554.3| Papio anubis clone RP41-414G17, complete sequence
          Length = 167543

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 420    cctttttggacattactctgaaag 443
              |||||||||||||| |||||||||
Sbjct: 133870 cctttttggacattcctctgaaag 133847
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>dbj|AB053120.1| Mus musculus DNA, proteasome activator genes, complete cds
          Length = 34849

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   tggagatggtttcagaggca 521
             ||||||||||||||||||||
Sbjct: 30565 tggagatggtttcagaggca 30546
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>gb|AC013286.9| Homo sapiens chromosome 10 clone RP11-369F10, complete sequence
          Length = 178357

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 442   agatgatgatcgtgtgaaaggctg 465
             ||||| ||||||||||||||||||
Sbjct: 34342 agatgctgatcgtgtgaaaggctg 34365
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>gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome 14, complete sequence
          Length = 224638

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   tggagatggtttcagaggca 521
             ||||||||||||||||||||
Sbjct: 58635 tggagatggtttcagaggca 58654


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,066,308
Number of Sequences: 3902068
Number of extensions: 4066308
Number of successful extensions: 71871
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71764
Number of HSP's gapped (non-prelim): 102
length of query: 590
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 567
effective length of database: 17,143,297,704
effective search space: 9720249798168
effective search space used: 9720249798168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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