Clone Name	rbaal24p06
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	811	0.0
2	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	656	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	656	0.0
4	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	484	e-133
5	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	470	e-129
6	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	416	e-113
7	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	383	e-103
8	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	260	4e-66
9	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
10	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
11	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
12	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
13	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	135	1e-28
14	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	6e-28
15	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	6e-28
16	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	6e-28
17	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	133	6e-28
18	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	6e-28
19	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	6e-28
20	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	133	6e-28
21	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	2e-24
22	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	119	8e-24
23	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	2e-18
24	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	100	8e-18
25	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	1e-16
26	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	1e-16
27	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	96	1e-16
28	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	1e-16
29	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	90	7e-15
30	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	82	2e-12
31	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	7e-12
32	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
33	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
34	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	74	4e-10
35	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	68	3e-08
36	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	68	3e-08
37	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	1e-04
38	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.40
39	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.40
40	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	1.6
41	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	1.6
42	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	6.2
43	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	6.2
44	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	6.2
45	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	6.2
46	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	6.2
47	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	6.2
48	gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete ...	40	6.2
49	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	6.2
50	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	6.2
51	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	6.2
52	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	6.2
53	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	6.2
54	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	6.2
55	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	6.2
56	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	6.2
57	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	6.2
58	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	6.2
59	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	6.2
60	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	6.2
61	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	6.2
62	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	6.2

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  811 bits (409), Expect = 0.0
 Identities = 439/444 (98%), Gaps = 4/444 (0%)
 Strand = Plus / Minus

                                                                        
Query: 21   agagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag-gtag 79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1679 agagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagtgtag 1620

                                                                        
Query: 80   gtaaaacatcagatnttaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt-cgt 138
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1619 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgt 1560

                                                                        
Query: 139  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggca-cg 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1559 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcg 1500

                                                                        
Query: 198  ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgt- 256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1499 ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtt 1440

                                                                        
Query: 257  gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatca 316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatca 1380

                                                                        
Query: 317  cccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgc 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 cccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgc 1320

                                                                        
Query: 377  tcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcg 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 tcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcg 1260

                                    
Query: 437  aaggtcacgggcccgtcccgcgag 460
            ||||||||||||||||||||||||
Sbjct: 1259 aaggtcacgggcccgtcccgcgag 1236

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  656 bits (331), Expect = 0.0
 Identities = 416/442 (94%), Gaps = 7/442 (1%)
 Strand = Plus / Minus

                                                                       
Query: 25  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 78
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 79  ggtaaaacatcagatnttaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 138
           | ||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628

                                                                       
Query: 139 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 198
           | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568

                                                                       
Query: 199 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 258
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508

                                                                       
Query: 259 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 318
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 448

                                                                       
Query: 319 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 388

                                                                       
Query: 379 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 387 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 328

                                 
Query: 439 ggtcacgggcccgtcccgcgag 460
           |||||| || ||||||||||||
Sbjct: 327 ggtcactggtccgtcccgcgag 306

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  656 bits (331), Expect = 0.0
 Identities = 416/442 (94%), Gaps = 7/442 (1%)
 Strand = Plus / Minus

                                                                        
Query: 25   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 78
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 79   ggtaaaacatcagatnttaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 138
            | ||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 139  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 198
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 199  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 258
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 259  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 318
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                        
Query: 319  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238

                                                                        
Query: 379  ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178

                                  
Query: 439  ggtcacgggcccgtcccgcgag 460
            |||||| || ||||||||||||
Sbjct: 1177 ggtcactggtccgtcccgcgag 1156

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  484 bits (244), Expect = e-133
 Identities = 334/363 (92%), Gaps = 2/363 (0%)
 Strand = Plus / Minus

                                                                        
Query: 98   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 157
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                                                                        
Query: 158  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 217
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408

                                                                        
Query: 218  tcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccg 277
            |||||||||||||||||||||||||||||||||||||||  ||| ||| | |||||||||
Sbjct: 1407 tcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttctaaccg 1350

                                                                        
Query: 278  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 337
            |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct: 1349 tagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggctcatg 1290

                                                                        
Query: 338  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 397
            || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1289 taagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtggccg 1230

                                                                        
Query: 398  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 457
            ||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||||||
Sbjct: 1229 tactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtcccgc 1170

               
Query: 458  gag 460
            |||
Sbjct: 1169 gag 1167

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  470 bits (237), Expect = e-129
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                        
Query: 224  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 284  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 344  tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176

                                                                     
Query: 404  agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgag 460
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgag 7119



 Score =  420 bits (212), Expect = e-114
 Identities = 223/228 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgggtatnctcaatatnttnagagatatattaacaaaacatgcccagcaatcgcttggat 60
            ||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7750 tgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttggat 7691

                                                                        
Query: 61   gcgatgcggacttaggtaggtaaaacatcagatnttaaaagtggcatgcttaaaaggtgt 120
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7690 gcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgt 7631

                                                                        
Query: 121  aaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcgg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7630 aaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcgg 7571

                                                            
Query: 181  tgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 228
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7570 tgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 350  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 409
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 410  ttctcgactgtcatctttggctgctcgaa 438
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  416 bits (210), Expect = e-113
 Identities = 221/226 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgggtatnctcaatatnttnagagatatattaacaaaacatgcccagcaatcgcttggat 60
            ||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 tgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttggat 1331

                                                                        
Query: 61   gcgatgcggacttaggtaggtaaaacatcagatnttaaaagtggcatgcttaaaaggtgt 120
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1330 gcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgt 1271

                                                                        
Query: 121  aaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcgg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 aaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcgg 1211

                                                          
Query: 181  tgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 226
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1210 tgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  371 bits (187), Expect = 1e-99
 Identities = 187/187 (100%)
 Strand = Plus / Minus

                                                                        
Query: 274  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 334  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048

                                                                        
Query: 394  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988

                   
Query: 454  ccgcgag 460
            |||||||
Sbjct: 987  ccgcgag 981

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  383 bits (193), Expect = e-103
 Identities = 205/209 (98%)
 Strand = Plus / Minus

                                                                       
Query: 252 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 311
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 312 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                                                                       
Query: 372 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129

                                        
Query: 432 gctcgaaggtcacgggcccgtcccgcgag 460
           |||| |||||||| || ||||||||||||
Sbjct: 128 gctcaaaggtcactggtccgtcccgcgag 100

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  260 bits (131), Expect = 4e-66
 Identities = 173/187 (92%)
 Strand = Plus / Minus

                                                                        
Query: 274  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 333
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 334  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 393
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244

                                                                        
Query: 394  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 453
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184

                   
Query: 454  ccgcgag 460
            |||||||
Sbjct: 1183 ccgcgag 1177



 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 98   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 157
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 158  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 217
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 218  tcctttacc 226
            |||||||||
Sbjct: 1369 tcctttacc 1361



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 42   gcccagcaatcgcttggatgcgatgcgg 69
            |||||||| ||||||| |||||||||||
Sbjct: 1552 gcccagcagtcgcttgtatgcgatgcgg 1525

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191

                                                          
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1145

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229

                                                          
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1183

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228

                                                          
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1182

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012

                                                          
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 966

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233

                                                          
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1187

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 107    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 167    ggcattttggtcggtgcaaccttccggcacgggca 201
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  105 bits (53), Expect = 1e-19
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                          
Query: 270    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 330    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425

                                                               
Query: 390    tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
              |||  |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 108474



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 125    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 185    accttccggcacggg 199
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 107   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 167   ggcattttggtcggtgcaaccttccggcacgggca 201
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  105 bits (53), Expect = 1e-19
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                         
Query: 270   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 330   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302

                                                              
Query: 390   tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
             |||  |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 30351



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 125   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 185   accttccggcacggg 199
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 167  ggcattttggtcggtgcaaccttccggcacgggca 201
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197

                                                          
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaa 1151

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 167  ggcattttggtcggtgcaaccttccggcacgggca 201
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 135/164 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 334
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 335  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 394
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190

                                                        
Query: 395  ccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
            |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1146

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 107      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 167      ggcattttggtcggtgcaaccttccggcacgggca 201
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  105 bits (53), Expect = 1e-19
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                            
Query: 270      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 330      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564

                                                                 
Query: 390      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 28303613



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 125      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 185      accttccggcacggg 199
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 107      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 167      ggcattttggtcggtgcaaccttccggcacgggca 201
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  105 bits (53), Expect = 1e-19
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                            
Query: 270      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 330      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013

                                                                 
Query: 390      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 28286062



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 125      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 185      accttccggcacggg 199
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 167  ggcattttggtcggtgcaaccttccggcacgggca 201
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 135/164 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 334
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 335  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 394
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225

                                                        
Query: 395  ccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
            |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1181

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 113 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 172
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 173 ttggtcggtgcaaccttccggcacgggca 201
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 8e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240

                                                          
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1194

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                       
Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
           ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446

                                                         
Query: 393 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
             |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaa 400

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 279 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 338
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 339 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 398
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 399 actctagcagcttctcgactgtcatctttggctgctcgaa 438
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 279  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 338
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 339  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 398
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 399  actctagcagcttctcgactgtcatctttggctgctcgaa 438
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 138/168 (82%)
 Strand = Plus / Minus

                                                                        
Query: 271  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 330
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 331  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 390
            ||||| |||  |||| || |||||||| | ||| || || ||||||||||| || |||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888

                                                            
Query: 391  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
            ||  |||||||| |||||||| || |  |||||||| |||||| ||||
Sbjct: 887  gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaa 840



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 177  tcggtgcaaccttc 190
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 279  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 338
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 339  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 398
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 399  actctagcagcttctcgactgtcatctttggctgctcgaa 438
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 132/161 (81%)
 Strand = Plus / Minus

                                                                        
Query: 278  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 337
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 338  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 397
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                     
Query: 398  tactctagcagcttctcgactgtcatctttggctgctcgaa 438
            ||||| |||||||| || |  |||||||| |||||| ||||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaa 1034



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 177  tcggtgcaaccttc 190
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 350  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 409
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 410  ttctcgactgtcatctttggctgctcgaa 438
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 296 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 355
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 356 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 411
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 107     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 167     ggcattttggtcggtgcaaccttccggcacgggca 201
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 107   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 167   ggcattttggtcggtgcaaccttccggcacgggca 201
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 350  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 409
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                         
Query: 410  ttctcgactgtcatctttggctgctcgaa 438
            |||||||  |||||||| ||||| |||||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaa 1154

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 177  tcggtgcaaccttc 190
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 177  tcggtgcaaccttc 190
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 307  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 366
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 367  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 426
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 427  tggctgctcgaa 438
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 299  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 348
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 312   catcacccagagctgcctggct 333
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   atgcagcaagagatggtgggt 254
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 350  agctgcacacgcttgacattgtcctgctc 378
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cctttacctcctcctatgca 238
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  cctttacctcctcctatgca 238
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 308  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 367
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 368  ttgtcctgctcctggacgagcatg 391
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cctttacctcctcctatgca 238
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 gtcagcaagctgcacacgct 362
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence
          Length = 107889

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 90    agatnttaaaagtggcatgctta 112
             |||| ||||||||||||||||||
Sbjct: 51524 agatgttaaaagtggcatgctta 51546

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    ttgacattgtcctgctcctg 381
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 116  ggtgtaaaggcagctgccgtcgtcgctc 143
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 36    aaacatgcccagcaatcgcttgga 59
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cctttacctcctcctatgca 238
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tggcatgcttaaaaggtgta 121
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    ttgacattgtcctgctcctg 381
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 208 cttgctgtgctcctttacctcctc 231
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cctttacctcctcctatgca 238
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,163,953
Number of Sequences: 3902068
Number of extensions: 3163953
Number of successful extensions: 58744
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58538
Number of HSP's gapped (non-prelim): 158
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---