ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25d23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y08490.1|HVATUB2 H.vulgare mRNA for alpha-tubulin 2 270 2e-69
2gb|U40042.1|HVU40042 Hordeum vulgare alpha tubulin (tubA) mRNA, ... 268 6e-69
3gb|U76558.1|TAU76558 Triticum aestivum alpha-tubulin mRNA, compl... 167 2e-38
4emb|AJ489275.1|CSA489275 Crocus sativus partial mRNA for alpha-t... 56 4e-05
5gb|BT016625.1| Zea mays clone Contig458 mRNA sequence 48 0.010
6gb|BT017959.1| Zea mays clone EL01N0523A02.c mRNA sequence 48 0.010
7emb|X15704.1|ZMALPTUB Zea mays tandem genes for alpha1-tubulin a... 48 0.010
8gb|BT016539.1| Zea mays clone Contig372 mRNA sequence 42 0.64
9gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.64
10emb|X91807.1|OSTA136 O.sativa mRNA for alpha-tubulin (clone OSTA... 42 0.64
11emb|X73980.1|ZMTUA4 Z.mays mRNA for alpha-tubulin 42 0.64
12emb|AJ420856.1|ZMA420856 Zea mays partial mRNA for alpha tubulin... 42 0.64
13emb|AJ132399.1|HVU132399 Hordeum vulgare mRNA for alpha-tubulin 3 42 0.64
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.64
15emb|X63180.1|ZMALTUB4B Z.mays (B37) mRNA for alpha-tubulin 4 42 0.64
16dbj|AK105080.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.64
17dbj|AK102560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.64
18gb|AY103544.1| Zea mays PCO076329 mRNA sequence 42 0.64
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.64
20emb|BX072579.14| Human DNA sequence from clone RP11-199F6 on chr... 42 0.64
21ref|NM_126345.2| Arabidopsis thaliana unknown protein AT2G02910 ... 40 2.5
22gb|AC008255.9| Drosophila melanogaster clone BACR48D17, complete... 40 2.5
23gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome ... 40 2.5
24gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 ma... 40 2.5
25gb|AY090356.1| Arabidopsis thaliana 40 2.5
26gb|AC093811.3| Homo sapiens BAC clone RP11-355H11 from 4, comple... 40 2.5
27gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Can... 40 2.5
28emb|BX821055.1|CNS0A9JB Arabidopsis thaliana Full-length cDNA Co... 40 2.5
29emb|BX820253.1|CNS0A9LC Arabidopsis thaliana Full-length cDNA Co... 40 2.5
30gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 ... 40 2.5
31gb|CP000225.1| Drosophila melanogaster genomic scaffold 21100002... 40 2.5
32ref|XM_628918.1| Dictyostelium discoideum isocitrate dehydrogena... 38 10.0
33gb|BT016741.1| Zea mays clone Contig574 mRNA sequence 38 10.0
34gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 38 10.0
35ref|XM_952052.1| Neurospora crassa OR74A hypothetical protein (N... 38 10.0
36ref|XM_326359.1| Neurospora crassa OR74A hypothetical protein (N... 38 10.0
37gb|AC128571.4| Rattus norvegicus 6 BAC CH230-424O13 (Children's ... 38 10.0
38gb|AC159002.2| Mus musculus BAC clone RP23-203D7 from chromosome... 38 10.0
39gb|AC125166.3| Mus musculus BAC clone RP24-435J4 from chromosome... 38 10.0
40gb|BC051241.1| Mus musculus neural retina leucine zipper gene, m... 38 10.0
41gb|AC131796.2| Mus musculus BAC clone RP24-493L24 from chromosom... 38 10.0
42emb|BX927114.16| Zebrafish DNA sequence from clone DKEY-1C7 in l... 38 10.0
43gb|AC117235.3| Mus musculus BAC clone RP23-415F18 from 17, compl... 38 10.0
44emb|BX323049.20| Zebrafish DNA sequence from clone DKEY-30L22 in... 38 10.0
45emb|AL356516.12| Human DNA sequence from clone RP11-75J9 on chro... 38 10.0
46emb|AL137061.12| Human DNA sequence from clone RP11-477B16 on ch... 38 10.0
47emb|AL049550.5|HSDJ90L14 Human DNA sequence from clone RP1-90L14... 38 10.0
48gb|AC166081.3| Mus musculus 10 BAC RP24-184F11 (Roswell Park Can... 38 10.0
49emb|AL691481.15| Mouse DNA sequence from clone RP23-173C3 on chr... 38 10.0
50emb|AJ586805.1| Setaria viridis tua2 gene for alpha tubulin, exo... 38 10.0
51emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, ... 38 10.0
52emb|BX247950.12| Zebrafish DNA sequence from clone CH211-51G21, ... 38 10.0
53gb|AC095057.3| Homo sapiens BAC clone RP11-395I6 from 4, complet... 38 10.0
54gb|AF236818.1|AF236818 Cavia porcellus acyl-CoA synthetase 1 mRN... 38 10.0
55gb|AC153367.5| Mus musculus 10 BAC RP23-182A11 (Roswell Park Can... 38 10.0
56dbj|AP000742.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 38 10.0
57gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome... 38 10.0
58emb|BX005088.4| Zebrafish DNA sequence from clone CH211-160E15 i... 38 10.0
59dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone... 38 10.0
60dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone... 38 10.0 
>emb|Y08490.1|HVATUB2 H.vulgare mRNA for alpha-tubulin 2
          Length = 1708

 Score =  270 bits (136), Expect = 2e-69
 Identities = 192/200 (96%), Gaps = 8/200 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacattaggttcagnacagnaccaatatgttncttacaacacaacaggttgtaaaacaaa 60
            |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1615 aacattaggttcag-acag-accaatatgtt-cttacaacacaacaggttgtaaaacaaa 1559

                                                                        
Query: 61   caccacaaagcaaacattcaaacagtacagnataacagnataaagctcgcttgggcagat 120
            ||||||||||||||||||||||||| |||| ||||||| ||||||| |||||||||||||
Sbjct: 1558 caccacaaagcaaacattcaaacag-acag-ataacag-ataaagc-cgcttgggcagat 1503

                                                                        
Query: 121  cataggcatagcagtagtacgccttgggaaagcaccaggaggcaggctctagtactcatc 180
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1502 catagg-atagcagtagtacgccttgggaaagcaccaggaggcaggctctagtactcatc 1444

                                
Query: 181  accctcgtcaccatcctcac 200
            ||||||||||||||||||||
Sbjct: 1443 accctcgtcaccatcctcac 1424
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>gb|U40042.1|HVU40042 Hordeum vulgare alpha tubulin (tubA) mRNA, complete cds
          Length = 1629

 Score =  268 bits (135), Expect = 6e-69
 Identities = 191/199 (95%), Gaps = 8/199 (4%)
 Strand = Plus / Minus

                                                                        
Query: 2    acattaggttcagnacagnaccaatatgttncttacaacacaacaggttgtaaaacaaac 61
            ||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1615 acattaggttcag-acag-accaatatgtt-cttacaacacaacaggttgtaaaacaaac 1559

                                                                        
Query: 62   accacaaagcaaacattcaaacagtacagnataacagnataaagctcgcttgggcagatc 121
            |||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||
Sbjct: 1558 accacaaagcaaacattcaaacag-acag-ataacag-ataaagc-cgcttgggcagatc 1503

                                                                        
Query: 122  ataggcatagcagtagtacgccttgggaaagcaccaggaggcaggctctagtactcatca 181
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1502 atagg-atagcagtagtacgccttgggaaagcaccaggaggcaggctctagtactcatca 1444

                               
Query: 182  ccctcgtcaccatcctcac 200
            |||||||||||||||||||
Sbjct: 1443 ccctcgtcaccatcctcac 1425
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>gb|U76558.1|TAU76558 Triticum aestivum alpha-tubulin mRNA, complete cds
          Length = 1675

 Score =  167 bits (84), Expect = 2e-38
 Identities = 153/168 (91%), Gaps = 6/168 (3%)
 Strand = Plus / Minus

                                                                        
Query: 33   cttacaacacaacaggttgtaaaacaaacaccacaaagcaaacattcaaacagtacagna 92
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct: 1598 cttacaacacaacaggttgtaaaacaaacaccacaaagcaaacgttcaaacag-acag-a 1541

                                                                        
Query: 93   taacagnataaagctcgcttgggcagatcataggcatagcagtagtacgccttgggaaag 152
            |||||| ||||||| | || |||||||||||||| |||||||||| | ||||||||||||
Sbjct: 1540 taacag-ataaagc-cactcgggcagatcatagg-atagcagtagcaagccttgggaaag 1484

                                                            
Query: 153  caccaggaggcaggctctagtactcatcaccctcgtcaccatcctcac 200
            |||||||||||||||| || |||||||| ||||| ||||| |||||||
Sbjct: 1483 caccaggaggcaggct-taatactcatcgccctcatcaccgtcctcac 1437
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>emb|AJ489275.1|CSA489275 Crocus sativus partial mRNA for alpha-tubulin
          Length = 331

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 173 tactcatcaccctcgtcaccatcctcac 200
           ||||||||||||||||||||||||||||
Sbjct: 224 tactcatcaccctcgtcaccatcctcac 197
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>gb|BT016625.1| Zea mays clone Contig458 mRNA sequence
          Length = 1771

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 167  ctctagtactcatcaccctcgtcaccatcctc 198
            ||||||||||| ||||||||||| ||||||||
Sbjct: 1463 ctctagtactcgtcaccctcgtcgccatcctc 1432
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>gb|BT017959.1| Zea mays clone EL01N0523A02.c mRNA sequence
          Length = 668

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 167 ctctagtactcatcaccctcgtcaccatcctc 198
           ||||||||||| ||||||||||| ||||||||
Sbjct: 326 ctctagtactcgtcaccctcgtcgccatcctc 295
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>emb|X15704.1|ZMALPTUB Zea mays tandem genes for alpha1-tubulin and alpha2-tubulin
          Length = 9244

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 167  ctctagtactcatcaccctcgtcaccatcctc 198
            ||||||||||| ||||||||||| ||||||||
Sbjct: 8893 ctctagtactcgtcaccctcgtcgccatcctc 8862



 Score = 42.1 bits (21), Expect = 0.64
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 168  tctagtactcatcaccctcgtcaccatcctcac 200
            |||||||||||||||| || ||||| |||||||
Sbjct: 5028 tctagtactcatcaccatcatcaccttcctcac 4996
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>gb|BT016539.1| Zea mays clone Contig372 mRNA sequence
          Length = 1712

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 168  tctagtactcatcaccctcgtcaccatcctcac 200
            |||||||||| ||||||||||| || |||||||
Sbjct: 1479 tctagtactcgtcaccctcgtcgccgtcctcac 1447
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>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08,
              complete sequence
          Length = 180999

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 175    ctcatcaccctcgtcaccatc 195
              |||||||||||||||||||||
Sbjct: 115659 ctcatcaccctcgtcaccatc 115679
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>emb|X91807.1|OSTA136 O.sativa mRNA for alpha-tubulin (clone OSTA-136)
          Length = 1677

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 175  ctcatcaccctcgtcaccatc 195
            |||||||||||||||||||||
Sbjct: 1422 ctcatcaccctcgtcaccatc 1402
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>emb|X73980.1|ZMTUA4 Z.mays mRNA for alpha-tubulin
          Length = 959

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 168 tctagtactcatcaccctcgtcaccatcctcac 200
           |||||||||| ||||||||||| || |||||||
Sbjct: 772 tctagtactcgtcaccctcgtcgccgtcctcac 740
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>emb|AJ420856.1|ZMA420856 Zea mays partial mRNA for alpha tubulin (tua4 gene)
          Length = 630

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 168 tctagtactcatcaccctcgtcaccatcctcac 200
           |||||||||| ||||||||||| || |||||||
Sbjct: 443 tctagtactcgtcaccctcgtcgccgtcctcac 411
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>emb|AJ132399.1|HVU132399 Hordeum vulgare mRNA for alpha-tubulin 3
          Length = 1692

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 155  ccaggaggcaggc-tctagtactcatcaccctcgtcaccatcctc 198
            ||||||||||||| |||||||||| || ||||| ||||| |||||
Sbjct: 1514 ccaggaggcaggcttctagtactcgtcgccctcatcaccgtcctc 1470
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 175     ctcatcaccctcgtcaccatc 195
               |||||||||||||||||||||
Sbjct: 7882289 ctcatcaccctcgtcaccatc 7882269
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>emb|X63180.1|ZMALTUB4B Z.mays (B37) mRNA for alpha-tubulin 4
          Length = 236

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 168 tctagtactcatcaccctcgtcaccatcctcac 200
           |||||||||| ||||||||||| || |||||||
Sbjct: 49  tctagtactcgtcaccctcgtcgccgtcctcac 17
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>dbj|AK105080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A05, full
           insert sequence
          Length = 359

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 175 ctcatcaccctcgtcaccatc 195
           |||||||||||||||||||||
Sbjct: 119 ctcatcaccctcgtcaccatc 99
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>dbj|AK102560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097H22, full
            insert sequence
          Length = 1760

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 175  ctcatcaccctcgtcaccatc 195
            |||||||||||||||||||||
Sbjct: 1432 ctcatcaccctcgtcaccatc 1412
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>gb|AY103544.1| Zea mays PCO076329 mRNA sequence
          Length = 1967

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 168  tctagtactcatcaccctcgtcaccatcctcac 200
            |||||||||| ||||||||||| || |||||||
Sbjct: 1586 tctagtactcgtcaccctcgtcgccgtcctcac 1554
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 175     ctcatcaccctcgtcaccatc 195
               |||||||||||||||||||||
Sbjct: 7952376 ctcatcaccctcgtcaccatc 7952356
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>emb|BX072579.14| Human DNA sequence from clone RP11-199F6 on chromosome 13 Contains the
             GAS6 gene for growth arrest-specific 6, six novel genes
             and ten CpG islands, complete sequence
          Length = 170020

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 176   tcatcaccctcgtcaccatcctcac 200
             |||||||||||||||||||| ||||
Sbjct: 19462 tcatcaccctcgtcaccatcatcac 19486
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>ref|NM_126345.2| Arabidopsis thaliana unknown protein AT2G02910 mRNA, complete cds
          Length = 1578

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 55  aacaaacaccacaaagcaaacatt 78
           |||||||| |||||||||||||||
Sbjct: 778 aacaaacatcacaaagcaaacatt 755
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>gb|AC008255.9| Drosophila melanogaster clone BACR48D17, complete sequence
          Length = 183316

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    caccacaaagcaaacattcaaaca 84
             |||| |||||||||||||||||||
Sbjct: 17444 caccgcaaagcaaacattcaaaca 17421
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>gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome 10, complete sequence
          Length = 222316

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 177    catcaccctcgtcaccatcctcac 200
              |||||||||| |||||||||||||
Sbjct: 166389 catcaccctcatcaccatcctcac 166412
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>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete
             sequence
          Length = 104016

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    aacaaacaccacaaagcaaacatt 78
             |||||||| |||||||||||||||
Sbjct: 28535 aacaaacatcacaaagcaaacatt 28558
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>gb|AY090356.1| Arabidopsis thaliana
          Length = 1546

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 55  aacaaacaccacaaagcaaacatt 78
           |||||||| |||||||||||||||
Sbjct: 749 aacaaacatcacaaagcaaacatt 726
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>gb|AC093811.3| Homo sapiens BAC clone RP11-355H11 from 4, complete sequence
          Length = 115335

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 53    aaaacaaacaccacaaagcaaacattcaaaca 84
             ||||||||||  ||||||||||||| ||||||
Sbjct: 42062 aaaacaaacaaaacaaagcaaacatacaaaca 42031
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>gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 160039

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 177   catcaccctcgtcaccatcctcac 200
             ||||||| ||||||||||||||||
Sbjct: 28732 catcaccatcgtcaccatcctcac 28709
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>emb|BX821055.1|CNS0A9JB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH9ZB03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1457

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 55  aacaaacaccacaaagcaaacatt 78
           |||||||| |||||||||||||||
Sbjct: 725 aacaaacatcacaaagcaaacatt 702
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>emb|BX820253.1|CNS0A9LC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH12ZH02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1525

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 55  aacaaacaccacaaagcaaacatt 78
           |||||||| |||||||||||||||
Sbjct: 725 aacaaacatcacaaagcaaacatt 702
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>gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 of 74 of the complete
              sequence
          Length = 341520

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     caccacaaagcaaacattcaaaca 84
              |||| |||||||||||||||||||
Sbjct: 298297 caccgcaaagcaaacattcaaaca 298320
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>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724
          Length = 820587

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 67    aaagcaaacattcaaacagtacag 90
             |||||||||||||||||| |||||
Sbjct: 71667 aaagcaaacattcaaacaatacag 71690
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>ref|XM_628918.1| Dictyostelium discoideum isocitrate dehydrogenase (NAD+)
           (DDB0231294), partial mRNA
          Length = 1083

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 64  cacaaagcaaacattcaaa 82
           |||||||||||||||||||
Sbjct: 577 cacaaagcaaacattcaaa 595
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>gb|BT016741.1| Zea mays clone Contig574 mRNA sequence
          Length = 1677

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 168  tctagtactcatcaccctcgtcaccatcctc 198
            |||||||||||||||| || ||||| |||||
Sbjct: 1475 tctagtactcatcaccatcatcaccttcctc 1445
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 161   ggcaggctctagtactcat 179
             |||||||||||||||||||
Sbjct: 27253 ggcaggctctagtactcat 27235
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>ref|XM_952052.1| Neurospora crassa OR74A hypothetical protein (NCU06505.1) partial
           mRNA
          Length = 1566

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 174 actcatcaccctcgtcacc 192
           |||||||||||||||||||
Sbjct: 849 actcatcaccctcgtcacc 831
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>ref|XM_326359.1| Neurospora crassa OR74A hypothetical protein (NCU06505.1) partial
           mRNA
          Length = 1566

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 174 actcatcaccctcgtcacc 192
           |||||||||||||||||||
Sbjct: 849 actcatcaccctcgtcacc 831
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>gb|AC128571.4| Rattus norvegicus 6 BAC CH230-424O13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 194127

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    aaaacaaacaccacaaagc 71
             |||||||||||||||||||
Sbjct: 85831 aaaacaaacaccacaaagc 85849
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>gb|AC159002.2| Mus musculus BAC clone RP23-203D7 from chromosome 14, complete sequence
          Length = 181842

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 38    aacacaacaggttgtaaaacaaa 60
             ||||||||||||| |||||||||
Sbjct: 34853 aacacaacaggttctaaaacaaa 34875
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>gb|AC125166.3| Mus musculus BAC clone RP24-435J4 from chromosome 18, complete sequence
          Length = 174565

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 141    gccttgggaaagcaccaggaggc 163
              ||||||||||| |||||||||||
Sbjct: 154188 gccttgggaaaacaccaggaggc 154166
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>gb|BC051241.1| Mus musculus neural retina leucine zipper gene, mRNA (cDNA clone
            IMAGE:6491690), with apparent retained intron
          Length = 4983

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 38   aacacaacaggttgtaaaacaaa 60
            ||||||||||||| |||||||||
Sbjct: 1308 aacacaacaggttctaaaacaaa 1330
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>gb|AC131796.2| Mus musculus BAC clone RP24-493L24 from chromosome 18, complete
             sequence
          Length = 130790

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    acaacaggttgtaaaacaa 59
             |||||||||||||||||||
Sbjct: 21752 acaacaggttgtaaaacaa 21734
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>emb|BX927114.16| Zebrafish DNA sequence from clone DKEY-1C7 in linkage group 1, complete
              sequence
          Length = 170755

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 176    tcatcaccctcgtcaccatcctc 198
              ||||||||||| |||||||||||
Sbjct: 127956 tcatcaccctcttcaccatcctc 127934
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>gb|AC117235.3| Mus musculus BAC clone RP23-415F18 from 17, complete sequence
          Length = 207331

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 54     aaacaaacaccacaaagcaaaca 76
              |||||||||| ||||||||||||
Sbjct: 131656 aaacaaacacgacaaagcaaaca 131678
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>emb|BX323049.20| Zebrafish DNA sequence from clone DKEY-30L22 in linkage group 9, complete
              sequence
          Length = 214040

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 34     ttacaacacaacaggttgtaaaa 56
              ||||||||||| |||||||||||
Sbjct: 164942 ttacaacacaaaaggttgtaaaa 164964
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>emb|AL356516.12| Human DNA sequence from clone RP11-75J9 on chromosome 9 Contains the 5'
             end of the GRIN3A gene for glutamate receptor, ionotropic,
             N-methyl-D-aspartate 3A (NR3A, NMDAR-L) and a CpG island,
             complete sequence
          Length = 96400

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 60    acaccacaaagcaaacattcaaa 82
             |||||||||||||||||| ||||
Sbjct: 52727 acaccacaaagcaaacatccaaa 52705
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>emb|AL137061.12| Human DNA sequence from clone RP11-477B16 on chromosome 13 Contains
            the SOX21 gene for SRY (sex determining region Y)-box 21,
            a bromodomain containing 7 (BP75, NAG4, CELTIX1) (BRD7)
            pseudogene, a ribosomal protein L21 (RPL21) pseudogene
            and 2 CpG islands, complete sequence
          Length = 180538

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 67   aaagcaaacattcaaacagtaca 89
            |||||||| ||||||||||||||
Sbjct: 3731 aaagcaaaaattcaaacagtaca 3709
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>emb|AL049550.5|HSDJ90L14 Human DNA sequence from clone RP1-90L14 on chromosome 6q14.1-15
             Contains the 3' end of a novel gene, complete sequence
          Length = 104594

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    tacaacacaacaggttgta 53
             |||||||||||||||||||
Sbjct: 56494 tacaacacaacaggttgta 56512
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>gb|AC166081.3| Mus musculus 10 BAC RP24-184F11 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 161394

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 61    caccacaaagcaaacattc 79
             |||||||||||||||||||
Sbjct: 74330 caccacaaagcaaacattc 74348
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>emb|AL691481.15| Mouse DNA sequence from clone RP23-173C3 on chromosome 4 Contains a
              non-neuron enolase 1 alpha  (Eno1) pseudogene, a
              mitochondrial H+ transporting ATP synthase F0 complex
              subunit d (Atp5h) pseudogene and a CpG island, complete
              sequence
          Length = 230127

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     aacaccacaaagcaaacat 77
              |||||||||||||||||||
Sbjct: 155719 aacaccacaaagcaaacat 155701
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>emb|AJ586805.1| Setaria viridis tua2 gene for alpha tubulin, exons 1-4
          Length = 2616

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 168  tctagtactcatcaccctcgtcaccatcctc 198
            |||||||||| ||||||||||| || |||||
Sbjct: 2561 tctagtactcgtcaccctcgtctccttcctc 2531
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>emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, complete sequence
          Length = 202570

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 58    aaacaccacaaagcaaaca 76
             |||||||||||||||||||
Sbjct: 99121 aaacaccacaaagcaaaca 99103
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>emb|BX247950.12| Zebrafish DNA sequence from clone CH211-51G21, complete sequence
          Length = 172752

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 58     aaacaccacaaagcaaaca 76
              |||||||||||||||||||
Sbjct: 150492 aaacaccacaaagcaaaca 150474
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>gb|AC095057.3| Homo sapiens BAC clone RP11-395I6 from 4, complete sequence
          Length = 163527

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 153    caccaggaggcaggctcta 171
              |||||||||||||||||||
Sbjct: 101018 caccaggaggcaggctcta 101036
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>gb|AF236818.1|AF236818 Cavia porcellus acyl-CoA synthetase 1 mRNA, complete cds
          Length = 3698

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 64   cacaaagcaaacattcaaa 82
            |||||||||||||||||||
Sbjct: 3615 cacaaagcaaacattcaaa 3597
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>gb|AC153367.5| Mus musculus 10 BAC RP23-182A11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 204838

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 61    caccacaaagcaaacattc 79
             |||||||||||||||||||
Sbjct: 41191 caccacaaagcaaacattc 41173
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>dbj|AP000742.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-82B15, complete
              sequence
          Length = 166543

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     acaaagcaaacattcaaac 83
              |||||||||||||||||||
Sbjct: 107766 acaaagcaaacattcaaac 107784
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>gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome 14, complete sequence
          Length = 224638

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 38     aacacaacaggttgtaaaacaaa 60
              ||||||||||||| |||||||||
Sbjct: 137980 aacacaacaggttctaaaacaaa 138002
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>emb|BX005088.4| Zebrafish DNA sequence from clone CH211-160E15 in linkage group 9,
             complete sequence
          Length = 193489

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 34    ttacaacacaacaggttgtaaaa 56
             ||||||||||| |||||||||||
Sbjct: 81858 ttacaacacaaaaggttgtaaaa 81836
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>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144,
              complete sequence
          Length = 135217

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     taaaacaaacaccacaaag 70
              |||||||||||||||||||
Sbjct: 120144 taaaacaaacaccacaaag 120162
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>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056,
             complete sequence
          Length = 102883

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    caaacattcaaacagtaca 89
             |||||||||||||||||||
Sbjct: 31887 caaacattcaaacagtaca 31869


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,629,891
Number of Sequences: 3902068
Number of extensions: 1629891
Number of successful extensions: 105045
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 104852
Number of HSP's gapped (non-prelim): 188
length of query: 200
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 178
effective length of database: 17,147,199,772
effective search space: 3052201559416
effective search space used: 3052201559416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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