ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24o23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 341 5e-91
2emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 333 1e-88
3gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 333 1e-88
4emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 313 1e-82
5emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 311 5e-82
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 188 5e-45
7gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, comp... 52 7e-04
8emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 46 0.042
9emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical pr... 46 0.042
10dbj|AB042066.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 46 0.042
11dbj|AB042064.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 46 0.042
12ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family,... 44 0.17
13gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.17
14gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.17
15dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 44 0.17
16dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 44 0.17
17dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 44 0.17
18dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.17
19gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carbo... 44 0.17
20gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, comp... 42 0.66
21emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 ... 42 0.66
22gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cance... 42 0.66
23gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodi... 42 0.66
24gb|M37477.1|WHTRUBIAB T.aestivum ribulose-1,5-bisphosphate carbo... 42 0.66
25dbj|AB042067.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 42 0.66
26gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, com... 40 2.6
27gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, compl... 40 2.6
28gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 2.6
29gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
30gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.6
32gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, com... 40 2.6
33ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 p... 40 2.6
34emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chr... 40 2.6
35emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on ch... 40 2.6
36emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chrom... 40 2.6
37gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Ca... 40 2.6
38gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's H... 40 2.6
39gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, com... 40 2.6
40gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 2.6
41dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary ... 40 2.6
42dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
45dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
46dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
47dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
48emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 40 2.6
49dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
50gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, co... 40 2.6
51emb|AJ635206.1| Triticum durum ssp. durum partial mRNA for putat... 40 2.6
52gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
53emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 2.6
54emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 2.6
55gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, comp... 40 2.6
56dbj|AB042068.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 40 2.6
57dbj|AB042065.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 40 2.6 
>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  341 bits (172), Expect = 5e-91
 Identities = 196/204 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgacagcattcacatacaagcatgttttctcgagccatgttggtacatgaacatggaca 60
           |||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 791 ccgatagcattcacatacgagcatgctttctcgagccatgttggtacatgaacatggaca 732

                                                                       
Query: 61  tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 731 tacacatattcttaggaacaaataagaaagataaatggacaaggaaaacccaaagcaatg 672

                                                                       
Query: 121 tcagagttgacaaaactgcaatggcactttatatgtggcccatcgtcagtgagctgttta 180
           ||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||||
Sbjct: 671 tcagagttgacaaaactgcaatggcactttatatgcggcccgtggtgagtgagctgttta 612

                                   
Query: 181 tgccttgccggactcctcgcagcc 204
           ||||||||||||||||||||||||
Sbjct: 611 tgccttgccggactcctcgcagcc 588
to top
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  333 bits (168), Expect = 1e-88
 Identities = 195/204 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgacagcattcacatacaagcatgttttctcgagccatgttggtacatgaacatggaca 60
           |||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 670 ccgatagcattctcatacgagcatgctttctcgagccatgttggtacatgaacatggaca 611

                                                                       
Query: 61  tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 551

                                                                       
Query: 121 tcagagttgacaaaactgcaatggcactttatatgtggcccatcgtcagtgagctgttta 180
           |||||||||||||||||||||||||||||||||| |||||  |||| |||||||||||||
Sbjct: 550 tcagagttgacaaaactgcaatggcactttatatatggcctgtcgtgagtgagctgttta 491

                                   
Query: 181 tgccttgccggactcctcgcagcc 204
            |||||||||||||||||||||||
Sbjct: 490 ggccttgccggactcctcgcagcc 467
to top
>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  333 bits (168), Expect = 1e-88
 Identities = 195/204 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgacagcattcacatacaagcatgttttctcgagccatgttggtacatgaacatggaca 60
           |||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct: 244 ccgatagcattcacatacgagcatgctttctcgagccatgttcgtacatgaacatggaca 185

                                                                       
Query: 61  tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 125

                                                                       
Query: 121 tcagagttgacaaaactgcaatggcactttatatgtggcccatcgtcagtgagctgttta 180
           |||||||||||||||||||||||||||||||||| |||||  |||| |||||||||||||
Sbjct: 124 tcagagttgacaaaactgcaatggcactttatatatggcctgtcgtgagtgagctgttta 65

                                   
Query: 181 tgccttgccggactcctcgcagcc 204
            |||||||||||||||||||||||
Sbjct: 64  ggccttgccggactcctcgcagcc 41
to top
>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  313 bits (158), Expect = 1e-82
 Identities = 188/198 (94%)
 Strand = Plus / Minus

                                                                       
Query: 7   gcattcacatacaagcatgttttctcgagccatgttggtacatgaacatggacatacaca 66
           |||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 513 gcattcacatacgagcacgctttctcgagccatgttgttacatgaacatggacatacaca 454

                                                                       
Query: 67  tattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagag 126
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 453 tattcttaggaacaagtaagaaagacaaatggagaaggaaaacccaaagcaatgtcagag 394

                                                                       
Query: 127 ttgacaaaactgcaatggcactttatatgtggcccatcgtcagtgagctgtttatgcctt 186
           ||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||
Sbjct: 393 ttgacaaaactgcaatggcactttatatgtggcccgtggtgagtgagctgtttaggcctt 334

                             
Query: 187 gccggactcctcgcagcc 204
           ||||||||||||||||||
Sbjct: 333 gccggactcctcgcagcc 316
to top
>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  311 bits (157), Expect = 5e-82
 Identities = 195/205 (95%), Gaps = 2/205 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgacagcattcacatacaagcatgttttctcgagccatgttggtacatgaacatggaca 60
           |||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 751 ccgatagcattcacatacgagcatgctttctcgagccatgttggtacatgaacatggaca 692

                                                                       
Query: 61  tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 632

                                                                       
Query: 121 tcagagttgacaaaactgcaatggcac-tttatatgtggcccatcgtcagtgagctgttt 179
           ||||||||||||||||||||||||||| |||||||  ||||  |||| ||||||||||||
Sbjct: 631 tcagagttgacaaaactgcaatggcacttttatat-aggcctgtcgtgagtgagctgttt 573

                                    
Query: 180 atgccttgccggactcctcgcagcc 204
           | |||||||||||||||||||||||
Sbjct: 572 aggccttgccggactcctcgcagcc 548
to top
>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  188 bits (95), Expect = 5e-45
 Identities = 187/206 (90%), Gaps = 10/206 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgacagcattcacatacaagcatgttttctcgagccatgttggtacatgaacatggaca 60
           |||| ||||||||||||| |||||| |||||||||| ||||||||||||||||||||   
Sbjct: 715 ccgatagcattcacatacgagcatgctttctcgagc-atgttggtacatgaacatgggac 657

                                                                       
Query: 61  tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 120
           |||||| ||| |||||||||| |||||||||||| |||||||||||||||  ||||| ||
Sbjct: 656 tacacacatt-ttaggaacaa-taagaaagataa-tggagaaggaaaacc--aagca-tg 603

                                                                       
Query: 121 tcagagttgacaaaactgcaatggcactttatatgtggcccatcgtcagtgagctgttta 180
           |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 602 tcagagttgacaaa-ctgcaatggcactt-atatgtg-cccatcgtcagtgagctgttta 546

                                     
Query: 181 tgccttgccggactcctcgcagcctg 206
           ||||||||| ||||||| ||||||||
Sbjct: 545 tgccttgcccgactcctggcagcctg 520
to top
>gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, complete sequence
          Length = 183599

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 79    caaataagaaagataaatggagaaggaaaa 108
             ||||||||||||| ||||||||||||||||
Sbjct: 97466 caaataagaaagaaaaatggagaaggaaaa 97437
to top
>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 44     gtacatgaacatggacatacaca 66
              |||||||||||||||||||||||
Sbjct: 152158 gtacatgaacatggacatacaca 152136
to top
>emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical protein, clone 5
          Length = 845

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 177 tttatgccttgccggactcctcgcagc 203
           |||||||||||||||| ||||||||||
Sbjct: 596 tttatgccttgccggattcctcgcagc 570
to top
>dbj|AB042066.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p9-1
          Length = 739

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 182 gccttgccggactcctcgcagcc 204
           |||||||||||||||||||||||
Sbjct: 735 gccttgccggactcctcgcagcc 713
to top
>dbj|AB042064.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p2-1
          Length = 653

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 182 gccttgccggactcctcgcagcc 204
           |||||||||||||||||||||||
Sbjct: 649 gccttgccggactcctcgcagcc 627
to top
>ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2
           (Ugt3a2), mRNA
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 105 aaaacccaaagcaatgtcagagttgacaaa 134
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
to top
>gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37820
           IMAGE:5098754), complete cds
          Length = 2196

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 105 aaaacccaaagcaatgtcagagttgacaaa 134
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
to top
>gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37957
           IMAGE:5134131), complete cds
          Length = 2192

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 105 aaaacccaaagcaatgtcagagttgacaaa 134
           |||| ||||||||| |||||||||||||||
Sbjct: 849 aaaatccaaagcaaagtcagagttgacaaa 820
to top
>dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430112M20 product:Hypothetical protein
           (Hypothetical UDP-glucoronosyl and UDP-glucosyl
           transferase containing protein), full insert sequence
          Length = 2284

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 105 aaaacccaaagcaatgtcagagttgacaaa 134
           |||| ||||||||| |||||||||||||||
Sbjct: 883 aaaatccaaagcaaagtcagagttgacaaa 854
to top
>dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630011D02 product:HYPOTHETICAL 59.7 KDA
           PROTEIN [Mus musculus]; weakly similar to
           UDP-Glycosyltransferase/glycogen phosphorylase, full
           insert sequence
          Length = 1723

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 105 aaaacccaaagcaatgtcagagttgacaaa 134
           |||| ||||||||| |||||||||||||||
Sbjct: 878 aaaatccaaagcaaagtcagagttgacaaa 849
to top
>dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730018P11 product:hypothetical
           UDP-glucoronosyl and UDP-glucosyl transferase containing
           protein, full insert sequence
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 105 aaaacccaaagcaatgtcagagttgacaaa 134
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
to top
>dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530069C13 product:hypothetical
           UDP-Glycosyltransferase/glycogen phosphorylase structure
           containing protein, full insert sequence
          Length = 1353

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 105 aaaacccaaagcaatgtcagagttgacaaa 134
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
to top
>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO)
            gene, exons 1 and 2
          Length = 2205

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 176  gtttatgccttgccggactcctcgca 201
            ||||| ||||||||||||||||||||
Sbjct: 1511 gtttaggccttgccggactcctcgca 1486
to top
>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence
          Length = 141653

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 68     attcttaggaacaaataagaaagat 92
              ||||||||||||||| |||||||||
Sbjct: 131901 attcttaggaacaaaaaagaaagat 131877
to top
>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the
              ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a
              eukaryotic translation initiation factor 3 subunit 6
              interacting protein (EIF3S6IP) pseudogene, the 3' end of
              the ZNF11B gene for zinc finger protein 11b (KOX 2), a
              novel gene (FLJ23327) and two CpG Islands, complete
              sequence
          Length = 146328

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 114    agcaatgtcagagttgacaaa 134
              |||||||||||||||||||||
Sbjct: 137861 agcaatgtcagagttgacaaa 137841
to top
>gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221540

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 68     attcttaggaacaaataagaaagat 92
              ||||||||||||||| |||||||||
Sbjct: 193767 attcttaggaacaaaaaagaaagat 193791
to top
>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2
            (rSkM2) gene
          Length = 2825

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 48   atgaacatggacatacacata 68
            |||||||||||||||||||||
Sbjct: 1420 atgaacatggacatacacata 1400
to top
>gb|M37477.1|WHTRUBIAB T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase
           (RUBISCO) gene, complete cds
          Length = 779

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 182 gccttgccggactcctcgcagcctg 206
           ||||||||||| |||||||||||||
Sbjct: 581 gccttgccggattcctcgcagcctg 557
to top
>dbj|AB042067.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p10-1
          Length = 629

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 182 gccttgccggactcctcgcagcctg 206
           |||||||||||||||||||| ||||
Sbjct: 625 gccttgccggactcctcgcaacctg 601
to top
>gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, complete sequence
          Length = 41406

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 44    gtacatgaacatggacatacacatattc 71
             ||||||||||||| ||||| ||||||||
Sbjct: 12032 gtacatgaacatgtacatatacatattc 12005
to top
>gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, complete sequence
          Length = 45765

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 44    gtacatgaacatggacatacacatattc 71
             ||||||||||||| ||||| ||||||||
Sbjct: 41180 gtacatgaacatgtacatatacatattc 41153
to top
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
               sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 106     aaacccaaagcaatgtcaga 125
               ||||||||||||||||||||
Sbjct: 1130897 aaacccaaagcaatgtcaga 1130916
to top
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0024K17 map near S16403, complete sequence
          Length = 172238

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 46   acatgaacatggacatacacatat 69
            ||||||||||| ||||||||||||
Sbjct: 4895 acatgaacatgaacatacacatat 4872
to top
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
              map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 46     acatgaacatggacatacacatat 69
              ||||||||||| ||||||||||||
Sbjct: 123589 acatgaacatgaacatacacatat 123566
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 46       acatgaacatggacatacacatat 69
                ||||||||||| ||||||||||||
Sbjct: 24888607 acatgaacatgaacatacacatat 24888584
to top
>gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, complete sequence
          Length = 171480

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaataagaaagataaatgga 99
             ||||||||||||||||||||
Sbjct: 75761 aaataagaaagataaatgga 75742
to top
>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase
           (CNI04270) partial mRNA
          Length = 3071

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 106 aaacccaaagcaatgtcaga 125
           ||||||||||||||||||||
Sbjct: 80  aaacccaaagcaatgtcaga 99
to top
>emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chromosome 1 Contains the
             TAGLN2 gene for transgelin 2, the IGSF9 gene for
             immunoglobulin superfamily member 9, the SLAMF9 gene for
             SLAM family member 9, a novel gene and three CpG islands,
             complete sequence
          Length = 80398

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    aaagataaatggagaaggaa 106
             ||||||||||||||||||||
Sbjct: 46055 aaagataaatggagaaggaa 46074
to top
>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete
              sequence
          Length = 175757

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    aaaactgcaatggcacttta 151
              ||||||||||||||||||||
Sbjct: 166594 aaaactgcaatggcacttta 166575
to top
>emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chromosome 1 Contains part of
             the DAB1 gene for disabled homolog 1 (Drosophila),
             complete sequence
          Length = 134011

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 122   cagagttgacaaaactgcaatggc 145
             |||||||||||||||| |||||||
Sbjct: 88758 cagagttgacaaaactacaatggc 88735
to top
>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 151302

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 62   acacatattcttaggaacaaataagaaa 89
            |||||||||||||| |||||| ||||||
Sbjct: 9178 acacatattcttagtaacaaaaaagaaa 9151
to top
>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 147560

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    gaacaaataagaaagataaa 95
             ||||||||||||||||||||
Sbjct: 45388 gaacaaataagaaagataaa 45407
to top
>gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, complete sequence
          Length = 208407

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     aagataaatggagaaggaaa 107
              ||||||||||||||||||||
Sbjct: 190875 aagataaatggagaaggaaa 190894
to top
>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    atgaacatggacatacacatattc 71
             |||||||||| |||||||||||||
Sbjct: 31202 atgaacatgggcatacacatattc 31225
to top
>dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330038M22
           product:unclassifiable, full insert sequence
          Length = 3845

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 44  gtacatgaacatggacatacacatattc 71
           ||||||||||||| ||||| ||||||||
Sbjct: 695 gtacatgaacatgtacatatacatattc 722
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 90      gataaatggagaaggaaaac 109
               ||||||||||||||||||||
Sbjct: 4847879 gataaatggagaaggaaaac 4847860
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 46       acatgaacatggacatacacatat 69
                ||||||||||| ||||||||||||
Sbjct: 11682609 acatgaacatgaacatacacatat 11682586



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 46       acatgaacatggacatacacatat 69
                ||||||||||| ||||||||||||
Sbjct: 10428734 acatgaacatgaacatacacatat 10428757
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 46       acatgaacatggacatacacatat 69
                ||||||||||| ||||||||||||
Sbjct: 24979677 acatgaacatgaacatacacatat 24979654
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 99      agaaggaaaacccaaagcaa 118
               ||||||||||||||||||||
Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854
to top
>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1026E06
          Length = 162784

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 46   acatgaacatggacatacacatat 69
            ||||||||||| ||||||||||||
Sbjct: 5348 acatgaacatgaacatacacatat 5371
to top
>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005N06
          Length = 140639

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 46    acatgaacatggacatacacatat 69
             ||||||||||| ||||||||||||
Sbjct: 31151 acatgaacatgaacatacacatat 31128
to top
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    gataaatggagaaggaaaac 109
             ||||||||||||||||||||
Sbjct: 90543 gataaatggagaaggaaaac 90562
to top
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    agaaggaaaacccaaagcaa 118
             ||||||||||||||||||||
Sbjct: 55294 agaaggaaaacccaaagcaa 55275
to top
>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence
          Length = 178228

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     aagataaatggagaaggaaa 107
              ||||||||||||||||||||
Sbjct: 104567 aagataaatggagaaggaaa 104586
to top
>emb|AJ635206.1| Triticum durum ssp. durum partial mRNA for putative rubisco small
           subunit (rbcS gene)
          Length = 518

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 gccttgccggactcctcgca 201
           ||||||||||||||||||||
Sbjct: 514 gccttgccggactcctcgca 495
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 90      gataaatggagaaggaaaac 109
               ||||||||||||||||||||
Sbjct: 4847860 gataaatggagaaggaaaac 4847841
to top
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     gataaatggagaaggaaaac 109
              ||||||||||||||||||||
Sbjct: 112081 gataaatggagaaggaaaac 112100
to top
>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
             sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    atgaacatggacatacacat 67
             ||||||||||||||||||||
Sbjct: 17489 atgaacatggacatacacat 17470
to top
>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence
          Length = 208713

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 44    gtacatgaacatggacatacacatattc 71
             ||||||||||||| ||||| ||||||||
Sbjct: 68296 gtacatgaacatgtacatatacatattc 68323
to top
>dbj|AB042068.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p13-1
          Length = 985

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 gccttgccggactcctcgca 201
           ||||||||||||||||||||
Sbjct: 981 gccttgccggactcctcgca 962
to top
>dbj|AB042065.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase Small subunit, complete cds,
           clone:p6-1
          Length = 638

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 gccttgccggactcctcgca 201
           ||||||||||||||||||||
Sbjct: 634 gccttgccggactcctcgca 615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,439,635
Number of Sequences: 3902068
Number of extensions: 2439635
Number of successful extensions: 177611
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 177196
Number of HSP's gapped (non-prelim): 408
length of query: 207
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 185
effective length of database: 17,147,199,772
effective search space: 3172231957820
effective search space used: 3172231957820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top