ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal25d19 |
|---|---|
| Clone Library Name | barley_pub |
>KAD_BORPE (P39068) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 218 Score = 33.5 bits (75), Expect = 0.43 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 17/90 (18%) Frame = -1 Query: 413 IRVKVPDSD-----EEFFLHPAT-----VRRNDRSAQSVDEWTGEQKVQYGDVPED---- 276 + ++VP+SD E +HPA+ VR N A+ VD+ TGE VQ D E+ Sbjct: 107 VEIEVPESDIIERMSERRVHPASGRSYHVRFNPPKAEGVDDVTGEPLVQRDDDREETVRH 166 Query: 275 ---IEPEEIRPMGNYAVSITWPDGFSQIAP 195 + + RP+ +Y S W + AP Sbjct: 167 RLNVYQNQTRPLVDYYSS--WAQSDAAAAP 194
>AKR1_MORAP (Q9UVH3) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) (Fragment) Length = 559 Score = 33.1 bits (74), Expect = 0.56 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Frame = +3 Query: 138 SCCWKRDIH*ALKHIQLIIRCYLTKSIR-PSYRNCIVA--HRPYLFRLDVFRYIAILYFL 308 SC +R + KH + RC P NCI A HR +L L +F +Y Sbjct: 276 SCIAQRPLR--SKHCKFCNRCVAKFDHHCPWIYNCIGAKNHRAFLIFLALFLSSVPIYAY 333 Query: 309 LSGPFVHTLSRSVVP--SDCCWVQEEL 383 LS ++H LS S VP SD C + + L Sbjct: 334 LSFEYLHVLSPSYVPVSSDPCLLGDTL 360
>KAD_BORPA (Q7W7G0) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 218 Score = 30.8 bits (68), Expect = 2.8 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 17/90 (18%) Frame = -1 Query: 413 IRVKVPDSD-----EEFFLHPAT-----VRRNDRSAQSVDEWTGEQKVQYGDVPED---- 276 + ++VP+SD +HPA+ VR N A+ VD+ TGE VQ D E+ Sbjct: 107 VEIEVPESDIIERMSGRRVHPASGRSYHVRFNPPKAEGVDDVTGEPLVQRDDDREETVRH 166 Query: 275 ---IEPEEIRPMGNYAVSITWPDGFSQIAP 195 + + RP+ +Y S W + AP Sbjct: 167 RLNVYQNQTRPLVDYYSS--WAQSDAAAAP 194
>KAD_BORBR (Q7WKU8) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 218 Score = 30.8 bits (68), Expect = 2.8 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 17/90 (18%) Frame = -1 Query: 413 IRVKVPDSD-----EEFFLHPAT-----VRRNDRSAQSVDEWTGEQKVQYGDVPED---- 276 + ++VP+SD +HPA+ VR N A+ VD+ TGE VQ D E+ Sbjct: 107 VEIEVPESDIIERMSGRRVHPASGRSYHVRFNPPKAEGVDDVTGEPLVQRDDDREETVRH 166 Query: 275 ---IEPEEIRPMGNYAVSITWPDGFSQIAP 195 + + RP+ +Y S W + AP Sbjct: 167 RLNVYQNQTRPLVDYYSS--WAQSDAAAAP 194
>XKR8_PANTR (Q49LS0) XK-related protein 8| Length = 395 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +3 Query: 75 CFFFVLNG*TLSLLYHEXGHCSCCWKRD 158 CFF G L L+Y+ H SCCWK D Sbjct: 326 CFFL---GLALRLVYYHWLHPSCCWKPD 350
>XKR8_HUMAN (Q9H6D3) XK-related protein 8| Length = 395 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +3 Query: 75 CFFFVLNG*TLSLLYHEXGHCSCCWKRD 158 CFF G L L+Y+ H SCCWK D Sbjct: 326 CFFL---GLALRLVYYHWLHPSCCWKPD 350
>SLAF1_MOUSE (Q9QUM4) Signaling lymphocytic activation molecule precursor| Length = 343 Score = 30.0 bits (66), Expect = 4.8 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +1 Query: 298 CTFCSPVHSSTL*ADRSFRLTVAGCKKNSSSESGTFTLIALIDL 429 CT +PV S + R+F L+ CK+ SSSES + L+ L Sbjct: 212 CTASNPVSSIS----RTFNLSSQACKQESSSESSPWMQYTLVPL 251
>DPOD2_CAEEL (Q19366) Preobable DNA polymerase delta small subunit (EC 2.7.7.7)| Length = 451 Score = 30.0 bits (66), Expect = 4.8 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = -1 Query: 389 DEEFFLHPATVRRNDRSAQSVDEWTGEQKVQYGDVPEDIEPEEIRPMGNYAVSI 228 DEE F+ V+R + E KV Y D ED E +E++ YA SI Sbjct: 72 DEEIFVVGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVK---RYAGSI 122
>PUR4_SCHPO (O14228) Probable phosphoribosylformylglycinamidine synthase (EC| 6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1323 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -1 Query: 521 DVAKIFQNLGVCVVQQCAKIRQQVSTAVS--YDRSIRAIRVKVPDSDEEFFLH-PATVRR 351 DV +I + + VV + + + +A++ YDR A+R K+P+ DE F H PA + R Sbjct: 97 DVIRIERGIAYSVVFKDDISEEMLKSALNHLYDRMTEALRFKLPEEDEVFDKHEPAPLVR 156
>PPCF_FLAME (P27195) Prolyl endopeptidase precursor (EC 3.4.21.26)| (Proline-specific endopeptidase) (PSE) (Post-proline cleaving enzyme) (PE) Length = 705 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -1 Query: 287 VPEDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLDMLERLVDVPLPATA 138 + E EP + G Y + D SQI YD+ L R + +P TA Sbjct: 339 IAETSEPMRVNSGGGYFFATYMKDALSQIKQYDKTGKLVREIKLPGSGTA 388
>ARAF_RAT (P14056) A-Raf proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) Length = 604 Score = 29.3 bits (64), Expect = 8.1 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = +3 Query: 255 PYLFRLDVFRYIAILYFLLSG--PFVHTLSRSVV 350 PY F+ DV+ Y +LY L++G P+ H SR + Sbjct: 483 PYSFQSDVYAYGVVLYELMTGSLPYSHIGSRDQI 516
>ARAF_MOUSE (P04627) A-Raf proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) Length = 604 Score = 29.3 bits (64), Expect = 8.1 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = +3 Query: 255 PYLFRLDVFRYIAILYFLLSG--PFVHTLSRSVV 350 PY F+ DV+ Y +LY L++G P+ H SR + Sbjct: 483 PYSFQSDVYAYGVVLYELMTGSLPYSHIGSRDQI 516
>BODG_PSESK (P80193) Gamma-butyrobetaine dioxygenase (EC 1.14.11.1)| (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) Length = 383 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -1 Query: 371 HPATVRRNDRSAQSVDEWTGEQKVQYGDVPEDIEPEEIRPMGNYAVSITWPDG 213 H +R N V E T EQ DVPEDI+ + + + + + W DG Sbjct: 38 HNLWLRDNCPCGDCVYEVTREQVFLVADVPEDIQVQAVTIGDDGRLVVQWDDG 90
>ARAF_PIG (O19004) A-Raf proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (A-Raf-1) Length = 606 Score = 29.3 bits (64), Expect = 8.1 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = +3 Query: 255 PYLFRLDVFRYIAILYFLLSG--PFVHTLSRSVV 350 PY F+ DV+ Y +LY L++G P+ H SR + Sbjct: 485 PYSFQSDVYAYGVVLYELMTGSLPYSHIGSRDQI 518
>YKKB_BACSU (P49855) Hypothetical protein ykkB| Length = 172 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -1 Query: 326 DEWTGEQKVQYGDVPEDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLD 180 D+ TGE Q G VP+ IE + + +G W +G++Q A LD Sbjct: 71 DKRTGEFLGQCGIVPQQIENQTVMEIGYMFARRHWGNGYAQEAARACLD 119 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,953,266 Number of Sequences: 219361 Number of extensions: 1288149 Number of successful extensions: 3580 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3579 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
