ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25d19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191794.1| Oryza sativa (japonica cultivar-group), predic... 505 e-140
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
3dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
4dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
5dbj|AK107082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
6ref|NM_113350.2| Arabidopsis thaliana HCF101 (HIGH-CHLOROPHYLL-F... 109 1e-20
7gb|AY450358.1| Arabidopsis thaliana [4Fe-4S] cluster assembly fa... 109 1e-20
8emb|AJ540304.1|ATH540304 Arabidopsis thaliana partial mRNA for p... 109 1e-20
9emb|BX823690.1|CNS0A7UW Arabidopsis thaliana Full-length cDNA Co... 109 1e-20
10emb|BX823365.1|CNS0A6NM Arabidopsis thaliana Full-length cDNA Co... 109 1e-20
11gb|AY086264.1| Arabidopsis thaliana clone 231598 mRNA, complete ... 109 1e-20
12dbj|AP000382.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 56 1e-04
13gb|AC113208.5| Homo sapiens chromosome 15, clone RP11-69H7, comp... 46 0.12
14gb|AC182398.3| Pan troglodytes BAC clone CH251-119B5 from chromo... 46 0.12
15gb|AC068338.14| Homo sapiens chromosome 15, clone RP11-817O13, c... 46 0.12
16gb|AC115830.6| Mus musculus chromosome 7, clone RP24-96A19, comp... 44 0.49
17gb|AC093474.7| Mus musculus chromosome 7, clone RP23-54H2, compl... 44 0.49
18gb|AY102285.1| Homo sapiens RTN4 (RTN4) gene, complete sequence,... 42 1.9
19gb|AC144776.2| Mus musculus BAC clone RP23-357B5 from chromosome... 42 1.9
20gb|AC099615.6| Mus musculus chromosome 1, clone RP23-412G3, comp... 42 1.9
21emb|AL645938.9| Mouse DNA sequence from clone RP23-15E24 on chro... 42 1.9
22gb|AC093165.5| Homo sapiens BAC clone RP11-1255P17 from 2, compl... 42 1.9
23gb|AC092461.6| Homo sapiens BAC clone RP11-232I22 from 2, comple... 42 1.9
24emb|CT030226.8| Mouse DNA sequence from clone RP24-98O3 on chrom... 42 1.9
25ref|NM_124630.4| Arabidopsis thaliana transcription factor AT5G5... 40 7.7
26gb|AC160992.2| Mus musculus BAC clone RP23-147I23 from chromosom... 40 7.7
27gb|AC111275.4| Rattus norvegicus 4 BAC CH230-49L22 (Children's H... 40 7.7
28emb|AM072493.1| Charadrius alexandrinus microsatellite DNA, locu... 40 7.7
29emb|AM072492.1| Charadrius alexandrinus microsatellite DNA, locu... 40 7.7
30gb|AC006482.3| Homo sapiens BAC clone RP11-455B5 from 7, complet... 40 7.7
31emb|CR356222.24| Zebrafish DNA sequence from clone DKEY-103J14 i... 40 7.7
32emb|BX546482.15| Zebrafish DNA sequence from clone DKEY-226B20 i... 40 7.7
33emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in... 40 7.7
34gb|AY099686.1| Arabidopsis thaliana SCARECROW transcriptional re... 40 7.7
35gb|AC087664.5| Homo sapiens chromosome 8, clone RP11-379I19, com... 40 7.7
36gb|AC096735.3| Homo sapiens BAC clone RP11-135M12 from 4, comple... 40 7.7
37emb|BX829501.1|CNS0A00G Arabidopsis thaliana Full-length cDNA Co... 40 7.7
38emb|BX005481.11| Zebrafish DNA sequence from clone CH211-79C1 in... 40 7.7
39gb|AF036305.1|AF036305 Arabidopsis thaliana scarecrow-like 8 (SC... 40 7.7
40emb|BX663512.4| Zebrafish DNA sequence from clone CH211-213F9 in... 40 7.7
41dbj|AP000378.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.7
42emb|AL163153.4|CNS01RIE Human chromosome 14 DNA sequence BAC R-1... 40 7.7
43emb|AL714024.31| Mouse DNA sequence from clone RP23-102H7 on chr... 40 7.7
44emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16,... 40 7.7
45gb|U07353.1|PCU07353 Penicillium chrysogenum ATCC 24791 ATP sulf... 40 7.7 
>ref|NM_191794.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1596

 Score =  505 bits (255), Expect = e-140
 Identities = 389/434 (89%)
 Strand = Plus / Minus

                                                                        
Query: 133  actgcagctgttgctggaagagggacatccactaagcgctcaagcatatccagttgatca 192
            ||||| ||||||| || | |||| |||||||| |  | ||||||||| |||| |||||||
Sbjct: 1586 actgctgctgttgttgcacgaggaacatccacaagcctctcaagcatttccaattgatca 1527

                                                                        
Query: 193  taaggtgctatctgactaaatccatcaggccaagttatagaaactgcatagttgcccatc 252
            |||||||||||||||  ||| |||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 1526 taaggtgctatctgagaaaaaccatcaggccaagttatagaaactgcgtagtttcccata 1467

                                                                        
Query: 253  ggccgtatctcttcaggctcgatgtcttcaggtacatcgccatactgtactttctgctct 312
            || || ||||||||||| || |||||||| |||| ||| ||||| |||||||||||||| 
Sbjct: 1466 ggacggatctcttcaggttcaatgtcttctggtatatcaccatattgtactttctgctca 1407

                                                                        
Query: 313  ccggtccattcgtccacactttgagcagatcggtcgttccgtctgactgttgctgggtgc 372
            || |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct: 1406 cctgtccattcgtccacactttgagcagatcggtcattccttctgactgttgctggatgc 1347

                                                                        
Query: 373  aagaagaactcctcatctgaatctggtactttcactctgattgctctaattgatctatca 432
            || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1346 aacaagaactcttcatctgaatctggtactttcactcggattgctctaattgatctatca 1287

                                                                        
Query: 433  taggacactgctgttgaaacttgttgtctaattttagcacattgttgaacaacacatact 492
            ||||| |||||||||||||| |||||||| ||||||||||| || ||||||||||| |||
Sbjct: 1286 taggaaactgctgttgaaacctgttgtctgattttagcacactgctgaacaacacaaact 1227

                                                                        
Query: 493  ccaagattctgaaatatcttcgcaacatccncttggggatcagccactacttcaggaatg 552
            ||||||||||||||  |||| ||||||||| |||| ||||||||||||||||||||||| 
Sbjct: 1226 ccaagattctgaaacgtcttagcaacatccccttgtggatcagccactacttcaggaatt 1167

                          
Query: 553  ccagtatctccaga 566
            ||||||||||||||
Sbjct: 1166 ccagtatctccaga 1153
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  198 bits (100), Expect = 1e-47
 Identities = 121/128 (94%)
 Strand = Plus / Minus

                                                                            
Query: 326      ccacactttgagcagatcggtcgttccgtctgactgttgctgggtgcaagaagaactcct 385
                |||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||| |
Sbjct: 30004545 ccacactttgagcagatcggtcattccttctgactgttgctggatgcaacaagaactctt 30004486

                                                                            
Query: 386      catctgaatctggtactttcactctgattgctctaattgatctatcataggacactgctg 445
                |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 30004485 catctgaatctggtactttcactcggattgctctaattgatctatcataggaaactgctg 30004426

                        
Query: 446      ttgaaact 453
                ||||||||
Sbjct: 30004425 ttgaaact 30004418



 Score =  147 bits (74), Expect = 5e-32
 Identities = 103/113 (91%)
 Strand = Plus / Minus

                                                                            
Query: 454      tgttgtctaattttagcacattgttgaacaacacatactccaagattctgaaatatcttc 513
                |||||||| ||||||||||| || ||||||||||| |||||||||||||||||  |||| 
Sbjct: 30004153 tgttgtctgattttagcacactgctgaacaacacaaactccaagattctgaaacgtctta 30004094

                                                                     
Query: 514      gcaacatccncttggggatcagccactacttcaggaatgccagtatctccaga 566
                ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 30004093 gcaacatccccttgtggatcagccactacttcaggaattccagtatctccaga 30004041



 Score =  123 bits (62), Expect = 7e-25
 Identities = 101/114 (88%)
 Strand = Plus / Minus

                                                                            
Query: 214      ccatcaggccaagttatagaaactgcatagttgcccatcggccgtatctcttcaggctcg 273
                |||||||||||||||||||||||||| ||||| ||||| || || ||||||||||| || 
Sbjct: 30004832 ccatcaggccaagttatagaaactgcgtagtttcccataggacggatctcttcaggttca 30004773

                                                                      
Query: 274      atgtcttcaggtacatcgccatactgtactttctgctctccggtccattcgtcc 327
                |||||||| |||| ||| ||||| |||||||||||||| || ||||||||||||
Sbjct: 30004772 atgtcttctggtatatcaccatattgtactttctgctcacctgtccattcgtcc 30004719



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 92/109 (84%), Gaps = 4/109 (3%)
 Strand = Plus / Minus

                                                                            
Query: 98       ctgaacattatctctactatatcacgaagnaggccactgcagctgttgctggaagaggga 157
                |||||||||||||||||| ||||| |||| ||   ||||| ||||||| || | |||| |
Sbjct: 30005049 ctgaacattatctctactctatcatgaag-ag---actgctgctgttgttgcacgaggaa 30004994

                                                                 
Query: 158      catccactaagcgctcaagcatatccagttgatcataaggtgctatctg 206
                ||||||| |  | ||||||||| |||| |||||||||||||||||||||
Sbjct: 30004993 catccacaagcctctcaagcatttccaattgatcataaggtgctatctg 30004945
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>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0480C01
          Length = 151100

 Score =  198 bits (100), Expect = 1e-47
 Identities = 121/128 (94%)
 Strand = Plus / Minus

                                                                          
Query: 326    ccacactttgagcagatcggtcgttccgtctgactgttgctgggtgcaagaagaactcct 385
              |||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||| |
Sbjct: 149103 ccacactttgagcagatcggtcattccttctgactgttgctggatgcaacaagaactctt 149044

                                                                          
Query: 386    catctgaatctggtactttcactctgattgctctaattgatctatcataggacactgctg 445
              |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 149043 catctgaatctggtactttcactcggattgctctaattgatctatcataggaaactgctg 148984

                      
Query: 446    ttgaaact 453
              ||||||||
Sbjct: 148983 ttgaaact 148976



 Score =  147 bits (74), Expect = 5e-32
 Identities = 103/113 (91%)
 Strand = Plus / Minus

                                                                          
Query: 454    tgttgtctaattttagcacattgttgaacaacacatactccaagattctgaaatatcttc 513
              |||||||| ||||||||||| || ||||||||||| |||||||||||||||||  |||| 
Sbjct: 148711 tgttgtctgattttagcacactgctgaacaacacaaactccaagattctgaaacgtctta 148652

                                                                   
Query: 514    gcaacatccncttggggatcagccactacttcaggaatgccagtatctccaga 566
              ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 148651 gcaacatccccttgtggatcagccactacttcaggaattccagtatctccaga 148599



 Score =  123 bits (62), Expect = 7e-25
 Identities = 101/114 (88%)
 Strand = Plus / Minus

                                                                          
Query: 214    ccatcaggccaagttatagaaactgcatagttgcccatcggccgtatctcttcaggctcg 273
              |||||||||||||||||||||||||| ||||| ||||| || || ||||||||||| || 
Sbjct: 149390 ccatcaggccaagttatagaaactgcgtagtttcccataggacggatctcttcaggttca 149331

                                                                    
Query: 274    atgtcttcaggtacatcgccatactgtactttctgctctccggtccattcgtcc 327
              |||||||| |||| ||| ||||| |||||||||||||| || ||||||||||||
Sbjct: 149330 atgtcttctggtatatcaccatattgtactttctgctcacctgtccattcgtcc 149277



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 92/109 (84%), Gaps = 4/109 (3%)
 Strand = Plus / Minus

                                                                          
Query: 98     ctgaacattatctctactatatcacgaagnaggccactgcagctgttgctggaagaggga 157
              |||||||||||||||||| ||||| |||| ||   ||||| ||||||| || | |||| |
Sbjct: 149607 ctgaacattatctctactctatcatgaag-ag---actgctgctgttgttgcacgaggaa 149552

                                                               
Query: 158    catccactaagcgctcaagcatatccagttgatcataaggtgctatctg 206
              ||||||| |  | ||||||||| |||| |||||||||||||||||||||
Sbjct: 149551 catccacaagcctctcaagcatttccaattgatcataaggtgctatctg 149503
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>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0690B02
          Length = 153116

 Score =  198 bits (100), Expect = 1e-47
 Identities = 121/128 (94%)
 Strand = Plus / Minus

                                                                       
Query: 326 ccacactttgagcagatcggtcgttccgtctgactgttgctgggtgcaagaagaactcct 385
           |||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||| |
Sbjct: 535 ccacactttgagcagatcggtcattccttctgactgttgctggatgcaacaagaactctt 476

                                                                       
Query: 386 catctgaatctggtactttcactctgattgctctaattgatctatcataggacactgctg 445
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 475 catctgaatctggtactttcactcggattgctctaattgatctatcataggaaactgctg 416

                   
Query: 446 ttgaaact 453
           ||||||||
Sbjct: 415 ttgaaact 408



 Score =  147 bits (74), Expect = 5e-32
 Identities = 103/113 (91%)
 Strand = Plus / Minus

                                                                       
Query: 454 tgttgtctaattttagcacattgttgaacaacacatactccaagattctgaaatatcttc 513
           |||||||| ||||||||||| || ||||||||||| |||||||||||||||||  |||| 
Sbjct: 143 tgttgtctgattttagcacactgctgaacaacacaaactccaagattctgaaacgtctta 84

                                                                
Query: 514 gcaacatccncttggggatcagccactacttcaggaatgccagtatctccaga 566
           ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 83  gcaacatccccttgtggatcagccactacttcaggaattccagtatctccaga 31



 Score =  123 bits (62), Expect = 7e-25
 Identities = 101/114 (88%)
 Strand = Plus / Minus

                                                                       
Query: 214 ccatcaggccaagttatagaaactgcatagttgcccatcggccgtatctcttcaggctcg 273
           |||||||||||||||||||||||||| ||||| ||||| || || ||||||||||| || 
Sbjct: 822 ccatcaggccaagttatagaaactgcgtagtttcccataggacggatctcttcaggttca 763

                                                                 
Query: 274 atgtcttcaggtacatcgccatactgtactttctgctctccggtccattcgtcc 327
           |||||||| |||| ||| ||||| |||||||||||||| || ||||||||||||
Sbjct: 762 atgtcttctggtatatcaccatattgtactttctgctcacctgtccattcgtcc 709



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 92/109 (84%), Gaps = 4/109 (3%)
 Strand = Plus / Minus

                                                                        
Query: 98   ctgaacattatctctactatatcacgaagnaggccactgcagctgttgctggaagaggga 157
            |||||||||||||||||| ||||| |||| ||   ||||| ||||||| || | |||| |
Sbjct: 1039 ctgaacattatctctactctatcatgaag-ag---actgctgctgttgttgcacgaggaa 984

                                                             
Query: 158  catccactaagcgctcaagcatatccagttgatcataaggtgctatctg 206
            ||||||| |  | ||||||||| |||| |||||||||||||||||||||
Sbjct: 983  catccacaagcctctcaagcatttccaattgatcataaggtgctatctg 935
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>dbj|AK107082.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-F12, full
            insert sequence
          Length = 1984

 Score =  127 bits (64), Expect = 4e-26
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                        
Query: 468  agcacattgttgaacaacacatactccaagattctgaaatatcttcgcaacatccncttg 527
            |||||| || ||||||||||| |||||||||||||||||  |||| ||||||||| ||||
Sbjct: 1246 agcacactgctgaacaacacaaactccaagattctgaaacgtcttagcaacatccccttg 1305

                                                   
Query: 528  gggatcagccactacttcaggaatgccagtatctccaga 566
             ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1306 tggatcagccactacttcaggaattccagtatctccaga 1344
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>ref|NM_113350.2| Arabidopsis thaliana HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP
            binding AT3G24430 (HCF101) mRNA, complete cds
          Length = 1794

 Score =  109 bits (55), Expect = 1e-20
 Identities = 175/215 (81%)
 Strand = Plus / Minus

                                                                        
Query: 202  atctgactaaatccatcaggccaagttatagaaactgcatagttgcccatcggccgtatc 261
            ||||| ||||| || || ||||| ||||| || || || ||||| ||||| || ||||| 
Sbjct: 1573 atctggctaaacccgtcgggccaggttatcgagacagcgtagtttcccattggtcgtatg 1514

                                                                        
Query: 262  tcttcaggctcgatgtcttcaggtacatcgccatactgtactttctgctctccggtccat 321
            || ||||| ||||| ||||| | ||||||||||||  | ||||| |||||||| ||||||
Sbjct: 1513 tcctcaggttcgatatcttccgctacatcgccatatagaactttttgctctccagtccat 1454

                                                                        
Query: 322  tcgtccacactttgagcagatcggtcgttccgtctgactgttgctgggtgcaagaagaac 381
            || ||||||||||| |||||||  || || | |||||| ||||| |||||||  ||||||
Sbjct: 1453 tcatccacactttgtgcagatctatcatttcttctgacggttgcagggtgcagtaagaac 1394

                                               
Query: 382  tcctcatctgaatctggtactttcactctgattgc 416
            || || ||||| | |||||| |||||||| |||||
Sbjct: 1393 tcttcgtctgagtttggtaccttcactctaattgc 1359
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>gb|AY450358.1| Arabidopsis thaliana [4Fe-4S] cluster assembly factor mRNA, complete
            cds; nuclear gene for chloroplast product
          Length = 1606

 Score =  109 bits (55), Expect = 1e-20
 Identities = 175/215 (81%)
 Strand = Plus / Minus

                                                                        
Query: 202  atctgactaaatccatcaggccaagttatagaaactgcatagttgcccatcggccgtatc 261
            ||||| ||||| || || ||||| ||||| || || || ||||| ||||| || ||||| 
Sbjct: 1532 atctggctaaacccgtcgggccaggttatcgagacagcgtagtttcccattggtcgtatg 1473

                                                                        
Query: 262  tcttcaggctcgatgtcttcaggtacatcgccatactgtactttctgctctccggtccat 321
            || ||||| ||||| ||||| | ||||||||||||  | ||||| |||||||| ||||||
Sbjct: 1472 tcctcaggttcgatatcttccgctacatcgccatatagaactttttgctctccagtccat 1413

                                                                        
Query: 322  tcgtccacactttgagcagatcggtcgttccgtctgactgttgctgggtgcaagaagaac 381
            || ||||||||||| |||||||  || || | |||||| ||||| |||||||  ||||||
Sbjct: 1412 tcatccacactttgtgcagatctatcatttcttctgacggttgcagggtgcagtaagaac 1353

                                               
Query: 382  tcctcatctgaatctggtactttcactctgattgc 416
            || || ||||| | |||||| |||||||| |||||
Sbjct: 1352 tcttcgtctgagtttggtaccttcactctaattgc 1318
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>emb|AJ540304.1|ATH540304 Arabidopsis thaliana partial mRNA for putative PSI stabilising
            protein precursor (hcf101 gene)
          Length = 1631

 Score =  109 bits (55), Expect = 1e-20
 Identities = 175/215 (81%)
 Strand = Plus / Minus

                                                                        
Query: 202  atctgactaaatccatcaggccaagttatagaaactgcatagttgcccatcggccgtatc 261
            ||||| ||||| || || ||||| ||||| || || || ||||| ||||| || ||||| 
Sbjct: 1558 atctggctaaacccgtcgggccaggttatcgagacagcgtagtttcccattggtcgtatg 1499

                                                                        
Query: 262  tcttcaggctcgatgtcttcaggtacatcgccatactgtactttctgctctccggtccat 321
            || ||||| ||||| ||||| | ||||||||||||  | ||||| |||||||| ||||||
Sbjct: 1498 tcctcaggttcgatatcttccgctacatcgccatatagaactttttgctctccagtccat 1439

                                                                        
Query: 322  tcgtccacactttgagcagatcggtcgttccgtctgactgttgctgggtgcaagaagaac 381
            || ||||||||||| |||||||  || || | |||||| ||||| |||||||  ||||||
Sbjct: 1438 tcatccacactttgtgcagatctatcatttcttctgacggttgcagggtgcagtaagaac 1379

                                               
Query: 382  tcctcatctgaatctggtactttcactctgattgc 416
            || || ||||| | |||||| |||||||| |||||
Sbjct: 1378 tcttcgtctgagtttggtaccttcactctaattgc 1344
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>emb|BX823690.1|CNS0A7UW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS67ZE08 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1678

 Score =  109 bits (55), Expect = 1e-20
 Identities = 175/215 (81%)
 Strand = Plus / Minus

                                                                        
Query: 202  atctgactaaatccatcaggccaagttatagaaactgcatagttgcccatcggccgtatc 261
            ||||| ||||| || || ||||| ||||| || || || ||||| ||||| || ||||| 
Sbjct: 1546 atctggctaaacccgtcgggccaggttatcgagacagcgtagtttcccattggtcgtatg 1487

                                                                        
Query: 262  tcttcaggctcgatgtcttcaggtacatcgccatactgtactttctgctctccggtccat 321
            || ||||| ||||| ||||| | ||||||||||||  | ||||| |||||||| ||||||
Sbjct: 1486 tcctcaggttcgatatcttccgctacatcgccatatagaactttttgctctccagtccat 1427

                                                                        
Query: 322  tcgtccacactttgagcagatcggtcgttccgtctgactgttgctgggtgcaagaagaac 381
            || ||||||||||| |||||||  || || | |||||| ||||| |||||||  ||||||
Sbjct: 1426 tcatccacactttgtgcagatctatcatttcttctgacggttgcagggtgcagtaagaac 1367

                                               
Query: 382  tcctcatctgaatctggtactttcactctgattgc 416
            || || ||||| | |||||| |||||||| |||||
Sbjct: 1366 tcttcgtctgagtttggtaccttcactctaattgc 1332
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>emb|BX823365.1|CNS0A6NM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS28ZE11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1700

 Score =  109 bits (55), Expect = 1e-20
 Identities = 175/215 (81%)
 Strand = Plus / Minus

                                                                        
Query: 202  atctgactaaatccatcaggccaagttatagaaactgcatagttgcccatcggccgtatc 261
            ||||| ||||| || || ||||| ||||| || || || ||||| ||||| || ||||| 
Sbjct: 1543 atctggctaaacccgtcgggccaggttatcgagacagcgtagtttcccattggtcgtatg 1484

                                                                        
Query: 262  tcttcaggctcgatgtcttcaggtacatcgccatactgtactttctgctctccggtccat 321
            || ||||| ||||| ||||| | ||||||||||||  | ||||| |||||||| ||||||
Sbjct: 1483 tcctcaggttcgatatcttccgctacatcgccatatagaactttttgctctccagtccat 1424

                                                                        
Query: 322  tcgtccacactttgagcagatcggtcgttccgtctgactgttgctgggtgcaagaagaac 381
            || ||||||||||| |||||||  || || | |||||| ||||| |||||||  ||||||
Sbjct: 1423 tcatccacactttgtgcagatctatcatttcttctgacggttgcagggtgcagtaagaac 1364

                                               
Query: 382  tcctcatctgaatctggtactttcactctgattgc 416
            || || ||||| | |||||| |||||||| |||||
Sbjct: 1363 tcttcgtctgagtttggtaccttcactctaattgc 1329
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>gb|AY086264.1| Arabidopsis thaliana clone 231598 mRNA, complete sequence
          Length = 1762

 Score =  109 bits (55), Expect = 1e-20
 Identities = 175/215 (81%)
 Strand = Plus / Minus

                                                                        
Query: 202  atctgactaaatccatcaggccaagttatagaaactgcatagttgcccatcggccgtatc 261
            ||||| ||||| || || ||||| ||||| || || || ||||| ||||| || ||||| 
Sbjct: 1574 atctggctaaacccgtcgggccaggttatcgagacagcgtagtttcccattggtcgtatg 1515

                                                                        
Query: 262  tcttcaggctcgatgtcttcaggtacatcgccatactgtactttctgctctccggtccat 321
            || ||||| ||||| ||||| | ||||||||||||  | ||||| |||||||| ||||||
Sbjct: 1514 tcctcaggttcgatatcttccgctacatcgccatatagaactttttgctctccagtccat 1455

                                                                        
Query: 322  tcgtccacactttgagcagatcggtcgttccgtctgactgttgctgggtgcaagaagaac 381
            || ||||||||||| |||||||  || || | |||||| ||||| |||||||  ||||||
Sbjct: 1454 tcatccacactttgtgcagatctatcatttcttctgacggttgcagggtgcagtaagaac 1395

                                               
Query: 382  tcctcatctgaatctggtactttcactctgattgc 416
            || || ||||| | |||||| |||||||| |||||
Sbjct: 1394 tcttcgtctgagtttggtaccttcactctaattgc 1360
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>dbj|AP000382.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7M2
          Length = 80393

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 85/104 (81%)
 Strand = Plus / Plus

                                                                         
Query: 220   ggccaagttatagaaactgcatagttgcccatcggccgtatctcttcaggctcgatgtct 279
             ||||| ||||| || || || ||||| ||||| || ||||| || ||||| ||||| |||
Sbjct: 76165 ggccaggttatcgagacagcgtagtttcccattggtcgtatgtcctcaggttcgatatct 76224

                                                         
Query: 280   tcaggtacatcgccatactgtactttctgctctccggtccattc 323
             || | ||||||||||||  | ||||| |||||||| ||||||||
Sbjct: 76225 tccgctacatcgccatatagaactttttgctctccagtccattc 76268
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>gb|AC113208.5| Homo sapiens chromosome 15, clone RP11-69H7, complete sequence
          Length = 153468

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 426   tctatcataggacactgctgttg 448
             |||||||||||||||||||||||
Sbjct: 34203 tctatcataggacactgctgttg 34181
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>gb|AC182398.3| Pan troglodytes BAC clone CH251-119B5 from chromosome 15, complete
             sequence
          Length = 150565

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 426   tctatcataggacactgctgttg 448
             |||||||||||||||||||||||
Sbjct: 90393 tctatcataggacactgctgttg 90371
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>gb|AC068338.14| Homo sapiens chromosome 15, clone RP11-817O13, complete sequence
          Length = 174192

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 426    tctatcataggacactgctgttg 448
              |||||||||||||||||||||||
Sbjct: 171856 tctatcataggacactgctgttg 171834
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>gb|AC115830.6| Mus musculus chromosome 7, clone RP24-96A19, complete sequence
          Length = 153718

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 461    taattttagcacattgttgaacaaca 486
              ||||||||||||||||||||| ||||
Sbjct: 146340 taattttagcacattgttgaaaaaca 146365
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>gb|AC093474.7| Mus musculus chromosome 7, clone RP23-54H2, complete sequence
          Length = 202444

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 461    taattttagcacattgttgaacaaca 486
              ||||||||||||||||||||| ||||
Sbjct: 126499 taattttagcacattgttgaaaaaca 126474
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>gb|AY102285.1| Homo sapiens RTN4 (RTN4) gene, complete sequence, alternatively spliced
          Length = 90756

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    gtctttgttttttctttgtcc 90
             |||||||||||||||||||||
Sbjct: 19423 gtctttgttttttctttgtcc 19443
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>gb|AC144776.2| Mus musculus BAC clone RP23-357B5 from chromosome 16, complete sequence
          Length = 190860

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    ccactgcagctgttgctggaa 151
              |||||||||||||||||||||
Sbjct: 128767 ccactgcagctgttgctggaa 128747
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>gb|AC099615.6| Mus musculus chromosome 1, clone RP23-412G3, complete sequence
          Length = 204191

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 386   catctgaatctggtactttca 406
             |||||||||||||||||||||
Sbjct: 93599 catctgaatctggtactttca 93579
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>emb|AL645938.9| Mouse DNA sequence from clone RP23-15E24 on chromosome 1 Contains the 5'
              end of a novel gene, complete sequence
          Length = 138851

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 386    catctgaatctggtactttca 406
              |||||||||||||||||||||
Sbjct: 136798 catctgaatctggtactttca 136818
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>gb|AC093165.5| Homo sapiens BAC clone RP11-1255P17 from 2, complete sequence
          Length = 163772

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 70   gtctttgttttttctttgtcc 90
            |||||||||||||||||||||
Sbjct: 1298 gtctttgttttttctttgtcc 1278
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>gb|AC092461.6| Homo sapiens BAC clone RP11-232I22 from 2, complete sequence
          Length = 39674

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    gtctttgttttttctttgtcc 90
             |||||||||||||||||||||
Sbjct: 38972 gtctttgttttttctttgtcc 38952
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>emb|CT030226.8| Mouse DNA sequence from clone RP24-98O3 on chromosome 16, complete
             sequence
          Length = 162238

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 131   ccactgcagctgttgctggaa 151
             |||||||||||||||||||||
Sbjct: 54968 ccactgcagctgttgctggaa 54948
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>ref|NM_124630.4| Arabidopsis thaliana transcription factor AT5G52510 mRNA, complete
            cds
          Length = 2254

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 61   aacataaaggtctttgttttttctttgt 88
            |||||||| |||||| ||||||||||||
Sbjct: 2215 aacataaaagtcttttttttttctttgt 2188
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>gb|AC160992.2| Mus musculus BAC clone RP23-147I23 from chromosome 9, complete sequence
          Length = 215980

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     gtctttgttttttctttgtc 89
              ||||||||||||||||||||
Sbjct: 134576 gtctttgttttttctttgtc 134595
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>gb|AC111275.4| Rattus norvegicus 4 BAC CH230-49L22 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 227595

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 73     tttgttttttctttgtccttaatg 96
              |||||||||||||| |||||||||
Sbjct: 151717 tttgttttttctttttccttaatg 151740
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>emb|AM072493.1| Charadrius alexandrinus microsatellite DNA, locus Calex-37, isolate
           Individual 4349, clone Kp F.c05
          Length = 267

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgtaacataaaggtctttgt 77
           ||||||||||||||||||||
Sbjct: 112 tgtaacataaaggtctttgt 131
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>emb|AM072492.1| Charadrius alexandrinus microsatellite DNA, locus Calex-37, isolate
           Individual 4349, clone Kp F.a03
          Length = 269

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 58  tgtaacataaaggtctttgt 77
           ||||||||||||||||||||
Sbjct: 158 tgtaacataaaggtctttgt 139
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>gb|AC006482.3| Homo sapiens BAC clone RP11-455B5 from 7, complete sequence
          Length = 180568

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     gtctttgttttttctttgtc 89
              ||||||||||||||||||||
Sbjct: 134257 gtctttgttttttctttgtc 134276
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>emb|CR356222.24| Zebrafish DNA sequence from clone DKEY-103J14 in linkage group 13,
              complete sequence
          Length = 206656

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    atactccaagattctgaaat 507
              ||||||||||||||||||||
Sbjct: 201479 atactccaagattctgaaat 201498
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>emb|BX546482.15| Zebrafish DNA sequence from clone DKEY-226B20 in linkage group 13,
              complete sequence
          Length = 206949

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    atactccaagattctgaaat 507
              ||||||||||||||||||||
Sbjct: 137748 atactccaagattctgaaat 137729
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>emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in linkage group 24,
             complete sequence
          Length = 202562

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   tatagaaactgcatagttgc 247
             ||||||||||||||||||||
Sbjct: 32584 tatagaaactgcatagttgc 32565
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>gb|AY099686.1| Arabidopsis thaliana SCARECROW transcriptional regulator-like
            (At5g52510) mRNA, complete cds
          Length = 1458

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 61   aacataaaggtctttgttttttctttgt 88
            |||||||| |||||| ||||||||||||
Sbjct: 1426 aacataaaagtcttttttttttctttgt 1399
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>gb|AC087664.5| Homo sapiens chromosome 8, clone RP11-379I19, complete sequence
          Length = 199456

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 65     taaaggtctttgttttttctttgt 88
              ||||||| ||||||||||||||||
Sbjct: 143092 taaaggtttttgttttttctttgt 143115
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>gb|AC096735.3| Homo sapiens BAC clone RP11-135M12 from 4, complete sequence
          Length = 193510

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 388   tctgaatctggtactttcactctg 411
             ||||||||||||||||||| ||||
Sbjct: 31583 tctgaatctggtactttcaatctg 31606
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>emb|BX829501.1|CNS0A00G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB18ZA02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1600

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 61   aacataaaggtctttgttttttctttgt 88
            |||||||| |||||| ||||||||||||
Sbjct: 1592 aacataaaagtcttttttttttctttgt 1565
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>emb|BX005481.11| Zebrafish DNA sequence from clone CH211-79C1 in linkage group 1,
             complete sequence
          Length = 170604

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    tttgttttttctttgtcctt 92
             ||||||||||||||||||||
Sbjct: 72457 tttgttttttctttgtcctt 72438
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>gb|AF036305.1|AF036305 Arabidopsis thaliana scarecrow-like 8 (SCL8) mRNA, partial cds
          Length = 1900

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 61   aacataaaggtctttgttttttctttgt 88
            |||||||| |||||| ||||||||||||
Sbjct: 1867 aacataaaagtcttttttttttctttgt 1840
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>emb|BX663512.4| Zebrafish DNA sequence from clone CH211-213F9 in linkage group 7,
             complete sequence
          Length = 95646

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 441   tgctgttgaaacttgttgtctaat 464
             |||| |||||||||||||||||||
Sbjct: 88732 tgcttttgaaacttgttgtctaat 88709
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>dbj|AP000378.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T4M5
          Length = 18384

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 61   aacataaaggtctttgttttttctttgt 88
            |||||||| |||||| ||||||||||||
Sbjct: 6985 aacataaaagtcttttttttttctttgt 6958
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>emb|AL163153.4|CNS01RIE Human chromosome 14 DNA sequence BAC R-16O13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166562

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    tttgttttttctttgtcctt 92
             ||||||||||||||||||||
Sbjct: 70285 tttgttttttctttgtcctt 70266
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>emb|AL714024.31| Mouse DNA sequence from clone RP23-102H7 on chromosome 5, complete
              sequence
          Length = 213519

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 65     taaaggtctttgttttttctttgt 88
              ||||||||||||||| ||||||||
Sbjct: 107643 taaaggtctttgtttattctttgt 107620
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>emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16, complete sequence
          Length = 182614

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   tatagaaactgcatagttgc 247
             ||||||||||||||||||||
Sbjct: 14576 tatagaaactgcatagttgc 14557
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>gb|U07353.1|PCU07353 Penicillium chrysogenum ATCC 24791 ATP sulfurylase mRNA, complete cds
          Length = 1822

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 344  ggtcgttccgtctgactgttgctgggtg 371
            |||||||||||||  |||||||||||||
Sbjct: 1273 ggtcgttccgtctccctgttgctgggtg 1300


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,783,610
Number of Sequences: 3902068
Number of extensions: 4783610
Number of successful extensions: 100280
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100154
Number of HSP's gapped (non-prelim): 126
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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