ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
2gb|U63530.1|OSU63530 Oryza sativa osRAD23 mRNA, complete cds 204 2e-49
3dbj|AK066105.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
4dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
5gb|AY106748.1| Zea mays PCO104379 mRNA sequence 109 8e-21
6ref|XM_482516.1| Oryza sativa (japonica cultivar-group), mRNA 105 1e-19
7dbj|AK064881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
8dbj|AK063768.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
9gb|BT016993.1| Zea mays clone EK07D2305C08.c mRNA sequence 101 2e-18
10gb|AY108301.1| Zea mays PCO104381 mRNA sequence 94 5e-16
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
12dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
13dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
15dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
16gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc... 54 4e-04
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
18dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
19dbj|AK104908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
20dbj|AK069065.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
21gb|BT017634.1| Zea mays clone EL01N0437H07.c mRNA sequence 46 0.099
22gb|AY108395.1| Zea mays PCO142081 mRNA sequence 44 0.39
23emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chro... 42 1.5
24ref|XM_966849.1| PREDICTED: Tribolium castaneum similar to CG145... 42 1.5
25gb|AC108073.3| Homo sapiens BAC clone RP11-713C19 from 4, comple... 42 1.5
26gb|AC150573.4| Bos taurus BAC CH240-238N22 (Children's Hospital... 40 6.1
27ref|XM_418952.1| PREDICTED: Gallus gallus similar to solute carr... 40 6.1
28ref|XM_588515.2| PREDICTED: Bos taurus similar to Rho guanine nu... 40 6.1
29emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chr... 40 6.1
30gb|AC153815.7| Mus musculus 6 BAC RP23-205F19 (Roswell Park Canc... 40 6.1
31gb|AC162464.7| Mus musculus 6 BAC RP24-131E12 (Roswell Park Canc... 40 6.1
32gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Ca... 40 6.1
33gb|AC151426.32| Medicago truncatula clone mth2-6o22, complete se... 40 6.1
34emb|BX950713.2| Gallus gallus finished cDNA, clone ChEST64l19 40 6.1
35gb|AC012104.6|AC012104 Mus musculus chromosome , clone CT7-478J1... 40 6.1
36dbj|AB113354.2| Sus scrofa 433 kb genomic segment, located betwe... 40 6.1
37emb|CT009711.11| Mouse DNA sequence from clone RP23-128L22 on ch... 40 6.1 
>dbj|AK103130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119P16, full
            insert sequence
          Length = 1513

 Score =  228 bits (115), Expect = 1e-56
 Identities = 241/283 (85%)
 Strand = Plus / Minus

                                                                        
Query: 172  cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
            ||||||| |||||||||||||| ||||  || |||||||| || ||   ||| |||||||
Sbjct: 1228 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 1169

                                                                        
Query: 232  tgcaggcaaagtaaacctccagaacaagcgcccggtcaaagcccattccctcaagacgaa 291
            |||| || ||| | || |||||||||||||| ||||||||||||||| | ||||||||||
Sbjct: 1168 tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccattgcttcaagacgaa 1109

                                                                        
Query: 292  gtatagcttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 351
            |||| |||||||||||||| |||||||| ||||||||||| |||| | |||| | |||||
Sbjct: 1108 gtatggcttcattctcctctggagtaactgctatggtctgtggcattgcctctggaaact 1049

                                                                        
Query: 352  gctctaggagattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaact 411
            | ||||| | |||||| || ||||| ||||||||||| |||||||||||  | |||||||
Sbjct: 1048 ggtctagcaaattctcttcatcatcaccctcagctggttcattgattaagtggaggaact 989

                                                       
Query: 412  cagcctggttgtcctgaatcaactgcaaaatctgagggttttg 454
            |||| ||||| |||||||||| |||||||||||| || |||||
Sbjct: 988  cagcttggttttcctgaatcagctgcaaaatctggggattttg 946
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>gb|U63530.1|OSU63530 Oryza sativa osRAD23 mRNA, complete cds
          Length = 1533

 Score =  204 bits (103), Expect = 2e-49
 Identities = 232/275 (84%)
 Strand = Plus / Minus

                                                                        
Query: 180  aactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgttgcaggca 239
            |||||||||||||| ||||  || |||||||| || ||   ||| ||||||||||| || 
Sbjct: 1214 aactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgttgcaagcg 1155

                                                                        
Query: 240  aagtaaacctccagaacaagcgcccggtcaaagcccattccctcaagacgaagtatagct 299
            ||| | || |||||||||||||| |||||||||||||||   |||||||||||||| |||
Sbjct: 1154 aagaacacgtccagaacaagcgcgcggtcaaagcccattggttcaagacgaagtatggct 1095

                                                                        
Query: 300  tcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaactgctctagg 359
            |||| |||||| |||||||| ||||||||||| |||| | |||| | |||||| ||||| 
Sbjct: 1094 tcatcctcctctggagtaactgctatggtctgtggcattgcctctggaaactggtctagc 1035

                                                                        
Query: 360  agattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaactcagcctgg 419
            | |||||| || ||||| ||||||||||| |||||||||||  | ||||||||||| |||
Sbjct: 1034 aaattctcttcatcatcaccctcagctggttcattgattaagtggaggaactcagcttgg 975

                                               
Query: 420  ttgtcctgaatcaactgcaaaatctgagggttttg 454
            || |||||||||| |||||||||||| || |||||
Sbjct: 974  ttttcctgaatcagctgcaaaatctggggattttg 940
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>dbj|AK066105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052E24, full
           insert sequence
          Length = 442

 Score =  139 bits (70), Expect = 9e-30
 Identities = 136/158 (86%)
 Strand = Plus / Minus

                                                                       
Query: 172 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
           ||||||| |||||||||||||| ||||  || |||||||| || ||   ||| |||||||
Sbjct: 158 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 99

                                                                       
Query: 232 tgcaggcaaagtaaacctccagaacaagcgcccggtcaaagcccattccctcaagacgaa 291
           |||| || ||| | || |||||||||||||| ||||||||||||||| | ||||||||||
Sbjct: 98  tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccattgcttcaagacgaa 39

                                                 
Query: 292 gtatagcttcattctcctcaggagtaacagctatggtc 329
           |||| |||||||||||||| |||||||| |||||||||
Sbjct: 38  gtatggcttcattctcctctggagtaactgctatggtc 1
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>dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138E11, full
            insert sequence
          Length = 2031

 Score =  119 bits (60), Expect = 8e-24
 Identities = 126/148 (85%)
 Strand = Plus / Minus

                                                                        
Query: 307  cctcaggagtaacagctatggtctgaggcactccctcagcaaactgctctaggagattct 366
            |||| |||||||| ||||||||||| |||| | |||| | |||||| ||||| | |||||
Sbjct: 1093 cctctggagtaactgctatggtctgtggcattgcctctggaaactggtctagcaaattct 1034

                                                                        
Query: 367  cgtcttcatcgccctcagctggctcattgattaaacgaaggaactcagcctggttgtcct 426
            | || ||||| ||||||||||| |||||||||||  | ||||||||||| ||||| ||||
Sbjct: 1033 cttcatcatcaccctcagctggttcattgattaagtggaggaactcagcttggttttcct 974

                                        
Query: 427  gaatcaactgcaaaatctgagggttttg 454
            |||||| |||||||||||| || |||||
Sbjct: 973  gaatcagctgcaaaatctggggattttg 946
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>gb|AY106748.1| Zea mays PCO104379 mRNA sequence
          Length = 779

 Score =  109 bits (55), Expect = 8e-21
 Identities = 127/151 (84%)
 Strand = Plus / Minus

                                                                       
Query: 180 aactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgttgcaggca 239
           ||||||| |||||| || || |||||||| ||||| ||   ||| | |||||||||||| 
Sbjct: 527 aactcgtgcatgtgatccaagaggtagttggcggccagctgctcgttcttgttgcaggcg 468

                                                                       
Query: 240 aagtaaacctccagaacaagcgcccggtcaaagcccattccctcaagacgaagtatagct 299
           ||| | || ||||| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 467 aagaacacttccaggacgagtgcccggtcaaagcccatcccttcaagacgaagtatagct 408

                                          
Query: 300 tcattctcctcaggagtaacagctatggtct 330
           ||||||||||| ||||| || || |||||||
Sbjct: 407 tcattctcctctggagtgactgcaatggtct 377
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>ref|XM_482516.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1526

 Score =  105 bits (53), Expect = 1e-19
 Identities = 226/283 (79%), Gaps = 3/283 (1%)
 Strand = Plus / Minus

                                                                        
Query: 172  cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
            ||||||| ||||||||||||||||| || || ||||||||||| |    |||||||||||
Sbjct: 1262 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcggccaacagctcatccttgt 1203

                                                                        
Query: 232  tgcaggcaaagtaaacctccagaacaagcgcccggtcaaagcccattccctcaagacgaa 291
            |||| || ||| | |||||||| || ||  | || ||||| ||||||   || |||||  
Sbjct: 1202 tgcacgcgaagaatacctccaggaccagatcgcgatcaaaccccatttgttccagacgtt 1143

                                                                        
Query: 292  gtatagcttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 351
            |||| ||||| ||||||||||| || ||||| |  || ||||||| |||| |||||||||
Sbjct: 1142 gtatggcttcgttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaact 1083

                                                                        
Query: 352  gctctaggagattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaact 411
            | ||||| |  |||    ||||| | ||||| || || || |||||||| || |||||||
Sbjct: 1082 ggtctagcaagttc---ccttcagctccctctgcaggttcgttgattaagcgcaggaact 1026

                                                       
Query: 412  cagcctggttgtcctgaatcaactgcaaaatctgagggttttg 454
            |||||||||| ||||||||||  ||||||||||| || |||||
Sbjct: 1025 cagcctggttttcctgaatcagttgcaaaatctgtggattttg 983
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>dbj|AK064881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J24, full
            insert sequence
          Length = 1526

 Score =  105 bits (53), Expect = 1e-19
 Identities = 226/283 (79%), Gaps = 3/283 (1%)
 Strand = Plus / Minus

                                                                        
Query: 172  cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
            ||||||| ||||||||||||||||| || || ||||||||||| |    |||||||||||
Sbjct: 1262 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcggccaacagctcatccttgt 1203

                                                                        
Query: 232  tgcaggcaaagtaaacctccagaacaagcgcccggtcaaagcccattccctcaagacgaa 291
            |||| || ||| | |||||||| || ||  | || ||||| ||||||   || |||||  
Sbjct: 1202 tgcacgcgaagaatacctccaggaccagatcgcgatcaaaccccatttgttccagacgtt 1143

                                                                        
Query: 292  gtatagcttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 351
            |||| ||||| ||||||||||| || ||||| |  || ||||||| |||| |||||||||
Sbjct: 1142 gtatggcttcgttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaact 1083

                                                                        
Query: 352  gctctaggagattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaact 411
            | ||||| |  |||    ||||| | ||||| || || || |||||||| || |||||||
Sbjct: 1082 ggtctagcaagttc---ccttcagctccctctgcaggttcgttgattaagcgcaggaact 1026

                                                       
Query: 412  cagcctggttgtcctgaatcaactgcaaaatctgagggttttg 454
            |||||||||| ||||||||||  ||||||||||| || |||||
Sbjct: 1025 cagcctggttttcctgaatcagttgcaaaatctgtggattttg 983
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>dbj|AK063768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B09, full
           insert sequence
          Length = 621

 Score =  105 bits (53), Expect = 1e-19
 Identities = 226/283 (79%), Gaps = 3/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 172 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
           ||||||| ||||||||||||||||| || || ||||||||||| |    |||||||||||
Sbjct: 303 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcggccaacagctcatccttgt 244

                                                                       
Query: 232 tgcaggcaaagtaaacctccagaacaagcgcccggtcaaagcccattccctcaagacgaa 291
           |||| || ||| | |||||||| || ||  | || ||||| ||||||   || |||||  
Sbjct: 243 tgcacgcgaagaatacctccaggaccagatcgcgatcaaaccccatttgttccagacgtt 184

                                                                       
Query: 292 gtatagcttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 351
           |||| ||||| ||||||||||| || ||||| |  || ||||||| |||| |||||||||
Sbjct: 183 gtatggcttcgttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaact 124

                                                                       
Query: 352 gctctaggagattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaact 411
           | ||||| |  |||    ||||| | ||||| || || || |||||||| || |||||||
Sbjct: 123 ggtctagcaagttc---ccttcagctccctctgcaggttcgttgattaagcgcaggaact 67

                                                      
Query: 412 cagcctggttgtcctgaatcaactgcaaaatctgagggttttg 454
           |||||||||| ||||||||||  ||||||||||| || |||||
Sbjct: 66  cagcctggttttcctgaatcagttgcaaaatctgtggattttg 24
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>gb|BT016993.1| Zea mays clone EK07D2305C08.c mRNA sequence
          Length = 989

 Score =  101 bits (51), Expect = 2e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                       
Query: 180 aactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgttgcaggca 239
           ||||||| |||||| || || |||||||| ||||  ||   ||||| ||||||||| || 
Sbjct: 734 aactcgtgcatgtgatccaagaggtagttggcggtcagctgctcattcttgttgcacgcg 675

                                                                       
Query: 240 aagtaaacctccagaacaagcgcccggtcaaagcccattccctcaagacgaagtatagct 299
           ||| | |||||||| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 674 aagaacacctccaggaccagtgcccggtcaaagcccatcccttcaagacgaagtatagct 615

                                          
Query: 300 tcattctcctcaggagtaacagctatggtct 330
           || |||||||| ||||| || || |||||||
Sbjct: 614 tcgttctcctctggagtcactgcaatggtct 584
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>gb|AY108301.1| Zea mays PCO104381 mRNA sequence
          Length = 1521

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 125/151 (82%)
 Strand = Plus / Minus

                                                                        
Query: 180  aactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgttgcaggca 239
            ||||||| |||||| || || |||||||| ||||  ||   ||||| ||||||||| || 
Sbjct: 1273 aactcgtgcatgtgatccaagaggtagttggcggtcagctgctcattcttgttgcacgcg 1214

                                                                        
Query: 240  aagtaaacctccagaacaagcgcccggtcaaagcccattccctcaagacgaagtatagct 299
            ||| | || ||||| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 1213 aagaacacttccaggaccagtgcccggtcaaagcccatcccttcaagacgaagtatagct 1154

                                           
Query: 300  tcattctcctcaggagtaacagctatggtct 330
            || |||||||| ||||| || || |||||||
Sbjct: 1153 tcgttctcctctggagtcactgcaatggtct 1123
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                            
Query: 372      tcatcgccctcagctggctcattgattaaacgaaggaactcagcctggttgtcctgaatc 431
                ||||| ||||||||||| |||||||||||  | ||||||||||| ||||| |||||||||
Sbjct: 14311613 tcatcaccctcagctggttcattgattaagtggaggaactcagcttggttttcctgaatc 14311554

                                       
Query: 432      aactgcaaaatctgagggttttg 454
                | |||||||||||| || |||||
Sbjct: 14311553 agctgcaaaatctggggattttg 14311531



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                            
Query: 172      cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
                ||||||| |||||||||||||| ||||  || |||||||| || ||   ||| |||||||
Sbjct: 14312006 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 14311947

                                                               
Query: 232      tgcaggcaaagtaaacctccagaacaagcgcccggtcaaagcccatt 278
                |||| || ||| | || |||||||||||||| |||||||||||||||
Sbjct: 14311946 tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccatt 14311900



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 287      acgaagtatagcttcattctcctcaggagtaacagctatggtctgaggcactccctcagc 346
                ||||||||| |||||||||||||| |||||||| ||||||||||| |||| | |||| | 
Sbjct: 14311781 acgaagtatggcttcattctcctctggagtaactgctatggtctgtggcattgcctctgg 14311722

                            
Query: 347      aaactgctctag 358
                |||||| |||||
Sbjct: 14311721 aaactggtctag 14311710
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>dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1261_A08
          Length = 162113

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                          
Query: 372    tcatcgccctcagctggctcattgattaaacgaaggaactcagcctggttgtcctgaatc 431
              ||||| ||||||||||| |||||||||||  | ||||||||||| ||||| |||||||||
Sbjct: 128158 tcatcaccctcagctggttcattgattaagtggaggaactcagcttggttttcctgaatc 128099

                                     
Query: 432    aactgcaaaatctgagggttttg 454
              | |||||||||||| || |||||
Sbjct: 128098 agctgcaaaatctggggattttg 128076



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                          
Query: 172    cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
              ||||||| |||||||||||||| ||||  || |||||||| || ||   ||| |||||||
Sbjct: 128551 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 128492

                                                             
Query: 232    tgcaggcaaagtaaacctccagaacaagcgcccggtcaaagcccatt 278
              |||| || ||| | || |||||||||||||| |||||||||||||||
Sbjct: 128491 tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccatt 128445



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                          
Query: 287    acgaagtatagcttcattctcctcaggagtaacagctatggtctgaggcactccctcagc 346
              ||||||||| |||||||||||||| |||||||| ||||||||||| |||| | |||| | 
Sbjct: 128326 acgaagtatggcttcattctcctctggagtaactgctatggtctgtggcattgcctctgg 128267

                          
Query: 347    aaactgctctag 358
              |||||| |||||
Sbjct: 128266 aaactggtctag 128255
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>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0465E03
          Length = 151206

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 372  tcatcgccctcagctggctcattgattaaacgaaggaactcagcctggttgtcctgaatc 431
            ||||| ||||||||||| |||||||||||  | ||||||||||| ||||| |||||||||
Sbjct: 3416 tcatcaccctcagctggttcattgattaagtggaggaactcagcttggttttcctgaatc 3357

                                   
Query: 432  aactgcaaaatctgagggttttg 454
            | |||||||||||| || |||||
Sbjct: 3356 agctgcaaaatctggggattttg 3334



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                        
Query: 172  cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
            ||||||| |||||||||||||| ||||  || |||||||| || ||   ||| |||||||
Sbjct: 3809 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 3750

                                                           
Query: 232  tgcaggcaaagtaaacctccagaacaagcgcccggtcaaagcccatt 278
            |||| || ||| | || |||||||||||||| |||||||||||||||
Sbjct: 3749 tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccatt 3703



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                        
Query: 287  acgaagtatagcttcattctcctcaggagtaacagctatggtctgaggcactccctcagc 346
            ||||||||| |||||||||||||| |||||||| ||||||||||| |||| | |||| | 
Sbjct: 3584 acgaagtatggcttcattctcctctggagtaactgctatggtctgtggcattgcctctgg 3525

                        
Query: 347  aaactgctctag 358
            |||||| |||||
Sbjct: 3524 aaactggtctag 3513
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                            
Query: 393      ttgattaaacgaaggaactcagcctggttgtcctgaatcaactgcaaaatctgagggttt 452
                |||||||| || ||||||||||||||||| ||||||||||  ||||||||||| || |||
Sbjct: 20793712 ttgattaagcgcaggaactcagcctggttttcctgaatcagttgcaaaatctgtggattt 20793653

                  
Query: 453      tg 454
                ||
Sbjct: 20793652 tg 20793651



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                            
Query: 172      cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
                ||||||| ||||||||||||||||| || || ||||||||||| |    |||||||||||
Sbjct: 20794149 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcggccaacagctcatccttgt 20794090

                                      
Query: 232      tgcaggcaaagtaaacctccag 253
                |||| || ||| | ||||||||
Sbjct: 20794089 tgcacgcgaagaatacctccag 20794068



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                            
Query: 292      gtatagcttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 351
                |||| ||||| ||||||||||| || ||||| |  || ||||||| |||| |||||||||
Sbjct: 20793899 gtatggcttcgttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaact 20793840

                       
Query: 352      gctctag 358
                | |||||
Sbjct: 20793839 ggtctag 20793833
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>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1124_B05
          Length = 109917

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 393   ttgattaaacgaaggaactcagcctggttgtcctgaatcaactgcaaaatctgagggttt 452
             |||||||| || ||||||||||||||||| ||||||||||  ||||||||||| || |||
Sbjct: 24845 ttgattaagcgcaggaactcagcctggttttcctgaatcagttgcaaaatctgtggattt 24786

               
Query: 453   tg 454
             ||
Sbjct: 24785 tg 24784



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                         
Query: 172   cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgt 231
             ||||||| ||||||||||||||||| || || ||||||||||| |    |||||||||||
Sbjct: 25282 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcggccaacagctcatccttgt 25223

                                   
Query: 232   tgcaggcaaagtaaacctccag 253
             |||| || ||| | ||||||||
Sbjct: 25222 tgcacgcgaagaatacctccag 25201



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                         
Query: 292   gtatagcttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 351
             |||| ||||| ||||||||||| || ||||| |  || ||||||| |||| |||||||||
Sbjct: 25032 gtatggcttcgttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaact 24973

                    
Query: 352   gctctag 358
             | |||||
Sbjct: 24972 ggtctag 24966
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>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete
              sequence
          Length = 120132

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 87/107 (81%)
 Strand = Plus / Plus

                                                                          
Query: 180    aactcgttcatgtggtctaacaggtagtttgcggctagggtctcatccttgttgcaggca 239
              ||||||| |||||| || || |||||||| ||||| ||   ||| | |||||||||||| 
Sbjct: 107695 aactcgtgcatgtgatccaagaggtagttggcggccagctgctcgttcttgttgcaggcg 107754

                                                             
Query: 240    aagtaaacctccagaacaagcgcccggtcaaagcccattccctcaag 286
              ||  | || ||||| ||||| ||||||||||||||||| || |||||
Sbjct: 107755 aaaaacacttccaggacaagtgcccggtcaaagcccatcccttcaag 107801



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 287    acgaagtatagcttcattctcctcaggagtaacagctatggtct 330
              ||||||||||||||| |||||||| ||||| || || |||||||
Sbjct: 107902 acgaagtatagcttcgttctcctctggagtgactgcaatggtct 107945
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                               
Query: 387     ggctcattgattaaacgaaggaactcagcctggttgtcctgaatcaac 434
               |||||||| |||||  ||||||||||| | ||||| ||||||||||||
Sbjct: 4411745 ggctcatttattaactgaaggaactcatcatggttctcctgaatcaac 4411698
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>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544B02
          Length = 156339

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 387   ggctcattgattaaacgaaggaactcagcctggttgtcctgaatcaac 434
             |||||||| |||||  ||||||||||| | ||||| ||||||||||||
Sbjct: 95309 ggctcatttattaactgaaggaactcatcatggttctcctgaatcaac 95262
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>dbj|AK104908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H06, full
           insert sequence
          Length = 1179

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 387 ggctcattgattaaacgaaggaactcagcctggttgtcctgaatcaac 434
           |||||||| |||||  ||||||||||| | ||||| ||||||||||||
Sbjct: 691 ggctcatttattaactgaaggaactcatcatggttctcctgaatcaac 644
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>dbj|AK069065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007H17, full
            insert sequence
          Length = 1675

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 387  ggctcattgattaaacgaaggaactcagcctggttgtcctgaatcaac 434
            |||||||| |||||  ||||||||||| | ||||| ||||||||||||
Sbjct: 1138 ggctcatttattaactgaaggaactcatcatggttctcctgaatcaac 1091
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>gb|BT017634.1| Zea mays clone EL01N0437H07.c mRNA sequence
          Length = 819

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 408 aactcagcctggttgtcctgaatcaactgcaaaatctgagggttttg 454
           |||||||| || || |||||||||||| ||||||| || ||||||||
Sbjct: 444 aactcagcttgattttcctgaatcaaccgcaaaatttgggggttttg 490
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>gb|AY108395.1| Zea mays PCO142081 mRNA sequence
          Length = 1776

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 225  tccttgttgcaggcaaagtaaacctccagaacaagcgcccggtcaaagcccattccctca 284
            ||||||||||| |||||| |||| || || |||||| |  |||  |||||||||||||||
Sbjct: 1301 tccttgttgcatgcaaagaaaacttctagcacaagctcatggttgaagcccattccctca 1242

              
Query: 285  ag 286
            ||
Sbjct: 1241 ag 1240
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>emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chromosome 6, complete
             sequence
          Length = 139086

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    gcaggaaaaggaattacagga 30
             |||||||||||||||||||||
Sbjct: 34450 gcaggaaaaggaattacagga 34470
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>ref|XM_966849.1| PREDICTED: Tribolium castaneum similar to CG14517-PA (LOC660633),
           mRNA
          Length = 909

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 125 ttgtgcatgtaattcagaaac 145
           |||||||||||||||||||||
Sbjct: 341 ttgtgcatgtaattcagaaac 321
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>gb|AC108073.3| Homo sapiens BAC clone RP11-713C19 from 4, complete sequence
          Length = 225639

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     gcaggaaaaggaattacagga 30
              |||||||||||||||||||||
Sbjct: 189492 gcaggaaaaggaattacagga 189472
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>gb|AC150573.4| Bos taurus  BAC CH240-238N22 (Children's Hospital Oakland Research
            Institute Bovine BAC Library (male)) complete sequence
          Length = 163445

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 218  ggtctcatccttgttgcaggcaaagtaa 245
            |||||| ||||||||| |||||||||||
Sbjct: 7642 ggtctcttccttgttggaggcaaagtaa 7669
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>ref|XM_418952.1| PREDICTED: Gallus gallus similar to solute carrier family 35,
           member B3; CGI-19 protein; chromosome 6 open reading
           frame 196 (LOC420863), mRNA
          Length = 1624

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 ttgtcctgaatcaactgcaa 439
           ||||||||||||||||||||
Sbjct: 314 ttgtcctgaatcaactgcaa 295
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>ref|XM_588515.2| PREDICTED: Bos taurus similar to Rho guanine nucleotide exchange
           factor 11 (PDZ-RhoGEF) (LOC511220), mRNA
          Length = 4011

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  aggaaaaggaattacaggac 31
           ||||||||||||||||||||
Sbjct: 560 aggaaaaggaattacaggac 579
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>emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chromosome 1 Contains a
             nicotinamide nucleotide adenylyltransferase 1 (NMNAT1)
             pseudogene and a high-mobility group box 3 (HMGB3)
             pseudogene, complete sequence
          Length = 184024

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aagtgacaaaatctcaaaaa 57
             ||||||||||||||||||||
Sbjct: 19760 aagtgacaaaatctcaaaaa 19741
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>gb|AC153815.7| Mus musculus 6 BAC RP23-205F19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 230983

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    cccacaatccttgctcccat 120
              ||||||||||||||||||||
Sbjct: 227067 cccacaatccttgctcccat 227086
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>gb|AC162464.7| Mus musculus 6 BAC RP24-131E12 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 175087

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   cccacaatccttgctcccat 120
             ||||||||||||||||||||
Sbjct: 67969 cccacaatccttgctcccat 67988
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>gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 162313

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tgggcttgtgcatgtaattc 139
             ||||||||||||||||||||
Sbjct: 96340 tgggcttgtgcatgtaattc 96359
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>gb|AC151426.32| Medicago truncatula clone mth2-6o22, complete sequence
          Length = 116955

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     aaggcaggaaaaggaattac 26
             ||||||||||||||||||||
Sbjct: 53578 aaggcaggaaaaggaattac 53597
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>emb|BX950713.2| Gallus gallus finished cDNA, clone ChEST64l19
          Length = 1376

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 ttgtcctgaatcaactgcaa 439
           ||||||||||||||||||||
Sbjct: 68  ttgtcctgaatcaactgcaa 49
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>gb|AC012104.6|AC012104 Mus musculus chromosome , clone CT7-478J15, complete sequence
          Length = 124373

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    cccacaatccttgctcccat 120
              ||||||||||||||||||||
Sbjct: 116187 cccacaatccttgctcccat 116206
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>dbj|AB113354.2| Sus scrofa 433 kb genomic segment, located between the non-classical
             and classical SLA class I gene cluster, clone: BAC 499E6
          Length = 154749

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    ctctaaggcctgccctgtga 81
             ||||||||||||||||||||
Sbjct: 83267 ctctaaggcctgccctgtga 83286
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>emb|CT009711.11| Mouse DNA sequence from clone RP23-128L22 on chromosome 13, complete
            sequence
          Length = 224715

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gacaaaatctcaaaaaggat 61
            ||||||||||||||||||||
Sbjct: 5626 gacaaaatctcaaaaaggat 5645


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,768,261
Number of Sequences: 3902068
Number of extensions: 3768261
Number of successful extensions: 66487
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66369
Number of HSP's gapped (non-prelim): 110
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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