ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4,... 54 3e-04
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
3dbj|AK066084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
4dbj|AK065331.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
5gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 46 0.081
6gb|AC141565.3| Mus musculus BAC clone RP23-160M21 from chromosom... 44 0.32
7gb|AC124729.4| Mus musculus BAC clone RP23-479H9 from chromosome... 44 0.32
8emb|AL604063.4| Mouse DNA sequence from clone RP23-467J12 on chr... 44 0.32
9dbj|AK028860.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 44 0.32
10dbj|AK053930.1| Mus musculus 2 days pregnant adult female oviduc... 44 0.32
11ref|NM_010585.2| Mus musculus inositol 1,4,5-triphosphate recept... 42 1.3
12gb|AC093093.5| Oryza sativa chromosome 10 BAC OSJNBb0076H04 geno... 42 1.3
13dbj|AK137477.1| Mus musculus adult male bone cDNA, RIKEN full-le... 42 1.3
14gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, c... 42 1.3
15dbj|AK049015.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 42 1.3
16gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.3
17dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
18gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
19emb|X15373.1|MMP400 Mouse cerebellum mRNA for P400 protein 42 1.3
20gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 5.0
21ref|XM_387690.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 5.0
22gb|AC084383.1| Mus musculus BAC clone RP23-10B20 from 17, comple... 40 5.0
23gb|AC166936.1| Mus musculus BAC clone RP24-244M17 from chromosom... 40 5.0
24gb|AC154318.3| Mus musculus BAC clone RP23-316D19 from chromosom... 40 5.0
25dbj|AK171379.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 5.0
26dbj|AK107236.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
27dbj|D14400.1|XELIP3R X. laevis mRNA for inositol 1,4,5-trisphosp... 40 5.0 
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                         
Query: 213   ttgttgtagccactgctgtcatagtcatcagtgttggaggtattcttaccactgctgtag 272
             ||||||||||||||||   ||||  |||||||||||||||  ||||||||||||  ||||
Sbjct: 53631 ttgttgtagccactgccaccatatccatcagtgttggaggcgttcttaccactgtcgtag 53690

                        
Query: 273   tcctcggtgct 283
             ||  |||||||
Sbjct: 53691 tcgccggtgct 53701
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 213      ttgttgtagccactgctgtcatagtcatcagtgttggaggtattcttaccactgctgtag 272
                ||||||||||||||||   ||||  |||||||||||||||  ||||||||||||  ||||
Sbjct: 20950440 ttgttgtagccactgccaccatatccatcagtgttggaggcgttcttaccactgtcgtag 20950499

                           
Query: 273      tcctcggtgct 283
                ||  |||||||
Sbjct: 20950500 tcgccggtgct 20950510
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>dbj|AK066084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051M03, full
           insert sequence
          Length = 1261

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                       
Query: 213 ttgttgtagccactgctgtcatagtcatcagtgttggaggtattcttaccactgctgtag 272
           ||||||||||||||||   ||||  |||||||||||||||  ||||||||||||  ||||
Sbjct: 710 ttgttgtagccactgccaccatatccatcagtgttggaggcgttcttaccactgtcgtag 651

                      
Query: 273 tcctcggtgct 283
           ||  |||||||
Sbjct: 650 tcgccggtgct 640
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>dbj|AK065331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M22, full
            insert sequence
          Length = 3861

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213  ttgttgtagccactgctgtcatagtcatcagtgttggaggtattcttaccactgctgtag 272
            ||||||||||||||||   ||||  |||||||||||||||  ||||||||||||  ||||
Sbjct: 3325 ttgttgtagccactgccaccatatccatcagtgttggaggcgttcttaccactgtcgtag 3266

                       
Query: 273  tcctcggtgct 283
            ||  |||||||
Sbjct: 3265 tcgccggtgct 3255
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 154     cgtcggcgccggactcgttgtag 176
               |||||||||||||||||||||||
Sbjct: 1239370 cgtcggcgccggactcgttgtag 1239348
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>gb|AC141565.3| Mus musculus BAC clone RP23-160M21 from chromosome 14, complete sequence
          Length = 210128

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 211    gcttgttgtagccactgctgtcatag 236
              ||||| ||||||||||||||||||||
Sbjct: 191590 gcttgctgtagccactgctgtcatag 191565
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>gb|AC124729.4| Mus musculus BAC clone RP23-479H9 from chromosome 14, complete sequence
          Length = 176086

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 211   gcttgttgtagccactgctgtcatag 236
             ||||| ||||||||||||||||||||
Sbjct: 19152 gcttgctgtagccactgctgtcatag 19127
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>emb|AL604063.4| Mouse DNA sequence from clone RP23-467J12 on chromosome 11, complete
             sequence
          Length = 146759

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 32    agcagggaccagtggcagtagc 53
             ||||||||||||||||||||||
Sbjct: 25668 agcagggaccagtggcagtagc 25647
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>dbj|AK028860.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732464A07 product:unclassifiable, full
            insert sequence
          Length = 2911

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 32   agcagggaccagtggcagtagc 53
            ||||||||||||||||||||||
Sbjct: 1327 agcagggaccagtggcagtagc 1348
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>dbj|AK053930.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
            full-length enriched library, clone:E230002J16
            product:unclassifiable, full insert sequence
          Length = 2066

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 32   agcagggaccagtggcagtagc 53
            ||||||||||||||||||||||
Sbjct: 1592 agcagggaccagtggcagtagc 1613
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>ref|NM_010585.2| Mus musculus inositol 1,4,5-triphosphate receptor 1 (Itpr1), mRNA
          Length = 9848

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 222  ccactgctgtcatagtcatca 242
            |||||||||||||||||||||
Sbjct: 2796 ccactgctgtcatagtcatca 2776
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>gb|AC093093.5| Oryza sativa chromosome 10 BAC OSJNBb0076H04 genomic sequence, complete
             sequence
          Length = 141050

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   attttgtctagtaatcatcag 122
             |||||||||||||||||||||
Sbjct: 81091 attttgtctagtaatcatcag 81111
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>dbj|AK137477.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830108A05 product:inositol
            1,4,5-triphosphate receptor 1, full insert sequence
          Length = 3806

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 222  ccactgctgtcatagtcatca 242
            |||||||||||||||||||||
Sbjct: 2820 ccactgctgtcatagtcatca 2800
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>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence
          Length = 144459

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    attttgtctagtaatcatcag 122
              |||||||||||||||||||||
Sbjct: 118338 attttgtctagtaatcatcag 118318
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>dbj|AK049015.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230091M20 product:inositol
            1,4,5-triphosphate receptor 1, full insert sequence
          Length = 3510

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 222  ccactgctgtcatagtcatca 242
            |||||||||||||||||||||
Sbjct: 2432 ccactgctgtcatagtcatca 2412
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 154     cgtcggcgccggactcgttgtagcc 178
               |||||||||||| ||||||||||||
Sbjct: 1797172 cgtcggcgccggcctcgttgtagcc 1797196
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 102      attttgtctagtaatcatcag 122
                |||||||||||||||||||||
Sbjct: 10477870 attttgtctagtaatcatcag 10477850
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 102      attttgtctagtaatcatcag 122
                |||||||||||||||||||||
Sbjct: 10483909 attttgtctagtaatcatcag 10483889
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>emb|X15373.1|MMP400 Mouse cerebellum mRNA for P400 protein
          Length = 9848

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 222  ccactgctgtcatagtcatca 242
            |||||||||||||||||||||
Sbjct: 2796 ccactgctgtcatagtcatca 2776
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>gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-287D23, complete
             sequence
          Length = 214292

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   ttttgtctagtaatcatcag 122
             ||||||||||||||||||||
Sbjct: 94330 ttttgtctagtaatcatcag 94349
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>ref|XM_387690.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07514.1)
           partial mRNA
          Length = 1506

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 gcggccattgtcgtcaccag 204
           ||||||||||||||||||||
Sbjct: 39  gcggccattgtcgtcaccag 58
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>gb|AC084383.1| Mus musculus BAC clone RP23-10B20 from 17, complete sequence
          Length = 203589

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   gtgctgggcttgttgtagcc 223
             ||||||||||||||||||||
Sbjct: 93139 gtgctgggcttgttgtagcc 93158
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>gb|AC166936.1| Mus musculus BAC clone RP24-244M17 from chromosome 12, complete
             sequence
          Length = 167608

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 201   ccagtgctgggcttgttgtagcca 224
             ||||||||||||||| ||||||||
Sbjct: 10125 ccagtgctgggcttggtgtagcca 10148
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>gb|AC154318.3| Mus musculus BAC clone RP23-316D19 from chromosome 12, complete sequence
          Length = 176391

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 201    ccagtgctgggcttgttgtagcca 224
              ||||||||||||||| ||||||||
Sbjct: 110651 ccagtgctgggcttggtgtagcca 110674
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>dbj|AK171379.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730112I03
            product:hypothetical protein, full insert sequence
          Length = 4726

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 204  gtgctgggcttgttgtagcc 223
            ||||||||||||||||||||
Sbjct: 4287 gtgctgggcttgttgtagcc 4306
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>dbj|AK107236.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E12, full
            insert sequence
          Length = 1700

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 71   tagcaccgcaaacacactcgcttt 94
            ||||||||||||||||||| ||||
Sbjct: 1631 tagcaccgcaaacacactctcttt 1654
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>dbj|D14400.1|XELIP3R X. laevis mRNA for inositol 1,4,5-trisphosphate receptor, complete
            cds
          Length = 8939

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  ccactgctgtcatagtcatc 241
            ||||||||||||||||||||
Sbjct: 2571 ccactgctgtcatagtcatc 2552


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,628,253
Number of Sequences: 3902068
Number of extensions: 2628253
Number of successful extensions: 43559
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43421
Number of HSP's gapped (non-prelim): 138
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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