ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7i23 |
|---|---|
| Clone Library Name | barley_pub |
>HMGL_WHEAT (P40621) HMG1/2-like protein| Length = 161 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/32 (96%), Positives = 32/32 (100%) Frame = -2 Query: 554 KSLSESEKAPFVAKANKLKGEYNKAIAAYNKG 459 KSLSESEKAP+VAKANKLKGEYNKAIAAYNKG Sbjct: 82 KSLSESEKAPYVAKANKLKGEYNKAIAAYNKG 113
>MNB1B_MAIZE (P27347) DNA-binding protein MNB1B (HMG1-like protein)| Length = 157 Score = 59.7 bits (143), Expect = 5e-09 Identities = 29/32 (90%), Positives = 31/32 (96%) Frame = -2 Query: 554 KSLSESEKAPFVAKANKLKGEYNKAIAAYNKG 459 KSLSES+KAP+VAKANKLK EYNKAIAAYNKG Sbjct: 81 KSLSESDKAPYVAKANKLKLEYNKAIAAYNKG 112
>HMGL_SOYBN (P26585) HMG1/2-like protein (SB11 protein)| Length = 152 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/31 (58%), Positives = 25/31 (80%) Frame = -2 Query: 554 KSLSESEKAPFVAKANKLKGEYNKAIAAYNK 462 K++S++EKAP+VAK+ K K EY K + AYNK Sbjct: 84 KTMSDAEKAPYVAKSEKRKVEYEKNMRAYNK 114
>HMGL_IPONI (P40619) HMG1/2-like protein| Length = 144 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/31 (58%), Positives = 23/31 (74%) Frame = -2 Query: 554 KSLSESEKAPFVAKANKLKGEYNKAIAAYNK 462 K L+ +EKAPF++KA K K EY K + AYNK Sbjct: 76 KQLTAAEKAPFISKAEKRKQEYEKNLQAYNK 106
>HMGL_VICFA (P40620) HMG1/2-like protein| Length = 149 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/31 (61%), Positives = 22/31 (70%) Frame = -2 Query: 554 KSLSESEKAPFVAKANKLKGEYNKAIAAYNK 462 KSLSE EKAP+V +A K K EY + AYNK Sbjct: 85 KSLSEEEKAPYVDRALKKKEEYEITLQAYNK 115
>HMGB3_MOUSE (O54879) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 199 Score = 34.3 bits (77), Expect = 0.24 Identities = 15/28 (53%), Positives = 21/28 (75%) Frame = -2 Query: 551 SLSESEKAPFVAKANKLKGEYNKAIAAY 468 +LS++EK P+V KA KLK +Y K +A Y Sbjct: 132 NLSDNEKQPYVTKAAKLKEKYEKDVADY 159
>HMGB3_HUMAN (O15347) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 199 Score = 33.9 bits (76), Expect = 0.32 Identities = 14/28 (50%), Positives = 21/28 (75%) Frame = -2 Query: 551 SLSESEKAPFVAKANKLKGEYNKAIAAY 468 +L++SEK P++ KA KLK +Y K +A Y Sbjct: 132 NLNDSEKQPYITKAAKLKEKYEKDVADY 159
>HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T1) (HMG-1)| Length = 204 Score = 31.2 bits (69), Expect = 2.1 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -2 Query: 551 SLSESEKAPFVAKANKLKGEYNKAIAAY-NKG 459 +L+ +K P+ KA++LK +Y K I AY NKG Sbjct: 134 NLTAEDKVPYEKKASRLKEKYEKDITAYRNKG 165
>HMGB1_CHICK (P36194) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 200 Score = 30.4 bits (67), Expect = 3.5 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -2 Query: 551 SLSESEKAPFVAKANKLKGEYNKAIAAY 468 +LS+ EK P+ KA KLK +Y K +A Y Sbjct: 131 NLSDGEKQPYNNKAAKLKEKYEKDVADY 158
>HMGB3_CHICK (P40618) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 201 Score = 30.4 bits (67), Expect = 3.5 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -2 Query: 551 SLSESEKAPFVAKANKLKGEYNKAIAAY 468 +LS+ EK P+ KA KLK +Y K +A Y Sbjct: 132 NLSDGEKQPYNNKAAKLKEKYEKDVADY 159
>HDC_HUMAN (Q9UBI9) Headcase protein homolog (hHDC)| Length = 543 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -1 Query: 117 GAPAGGVLLAVLGCMSSAAGVP 52 GA AGG L A GC ++AAG P Sbjct: 37 GAAAGGALAAAAGCGAAAAGAP 58
>HMGB2_HUMAN (P26583) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 208 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -2 Query: 545 SESEKAPFVAKANKLKGEYNKAIAAY 468 S +K P+ KA KLK +Y K IAAY Sbjct: 136 SAKDKQPYEQKAAKLKEKYEKDIAAY 161
>HMGB2_RAT (P52925) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -2 Query: 545 SESEKAPFVAKANKLKGEYNKAIAAY 468 S +K P+ KA KLK +Y K IAAY Sbjct: 136 SAKDKQPYEQKAAKLKEKYEKDIAAY 161
>HMGB2_PIG (P17741) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -2 Query: 545 SESEKAPFVAKANKLKGEYNKAIAAY 468 S +K P+ KA KLK +Y K IAAY Sbjct: 136 SAKDKQPYEQKAAKLKEKYEKDIAAY 161
>HMGB2_MOUSE (P30681) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -2 Query: 545 SESEKAPFVAKANKLKGEYNKAIAAY 468 S +K P+ KA KLK +Y K IAAY Sbjct: 136 SAKDKQPYEQKAAKLKEKYEKDIAAY 161
>LPXK_NITWN (Q3SPI3) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 337 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -1 Query: 156 RPSVLL*RIALPVGAPAGGVLLAVLGCMSSAAGVPL 49 RPS LL R+ +PVGA G + L AGVP+ Sbjct: 9 RPSSLLSRLLIPVGALYGAIAARRLSRTGLRAGVPV 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,979,838 Number of Sequences: 219361 Number of extensions: 967142 Number of successful extensions: 3277 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3276 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
