>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = -1

Query: 471 FFFPKAAPNVRKGALPWHVLLXIFVYILALATAELGFLEKLTFLQSSGIDKYGPESFLVN 292
           F FP A+ ++R    P HV     +++L++ATA LG  E L F   +    + PE  L N
Sbjct: 144 FLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSTFEPEGVLAN 203

>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = -1

Query: 471 FFFPKAAPNVRKGALPWHVLLXIFVYILALATAELGFLEKLTFLQSSGIDKYGPESFLVN 292
           F FP A+ ++R    P HV     +++L++ATA LG  E L F   +    + PE  L N
Sbjct: 144 FLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSMFEPEGVLAN 203

>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)|
          Length = 250

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -1

Query: 471 FFFPKAAPNVRKGALPWHVLLXIFVYILALATAELGFLEKLTFLQSSGIDKYGPESFLVN 292
           F FP A+ ++R    P H+     +++ ++ TA LG  E L F   S    + PE  L N
Sbjct: 142 FLFPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKLGSKYSTFEPEGVLAN 201

>CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561)|
          Length = 251

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -1

Query: 471 FFFPKAAPNVRKGALPWHVLLXIFVYILALATAELGFLEKLTFLQSSGIDKYGPESFLVN 292
           F FP A+ ++R    P H+     +++L++ TA LG  E L F        + PE  L N
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFKLRDKYSAFEPEGVLAN 202

>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)|
          Length = 251

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -1

Query: 471 FFFPKAAPNVRKGALPWHVLLXIFVYILALATAELGFLEKLTFLQSSGIDKYGPESFLVN 292
           F FP A+ ++R    P H+     +++L++ TA LG  E L F        + PE  L N
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGGKYSAFEPEGVLAN 202

>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 35.4 bits (80), Expect = 0.074
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -1

Query: 471 FFFPKAAPNVRKGALPWHVLLXIFVYILALATAELGFLEKLTFLQSSGIDKYGPESFLVN 292
           F FP A+ ++R    P HV     +++L++ TA LG  E L F   +    +  E  L N
Sbjct: 144 FLFPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQLGTKYSAFESEGVLAN 203

>MATK_CASLN (Q9TIS6) Maturase K (Intron maturase)|
          Length = 509

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWFF 222
           C   I +Q   IL S+  G S     LFM ++  +++ FW W  +LWF+
Sbjct: 274 CIHYIRYQRKAILASK--GTS-----LFMNKWKCYLITFWQWHFSLWFY 315

>MATK_PAUTO (Q8M930) Maturase K (Intron maturase)|
          Length = 511

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFMQYTSHILVFWDWSVTLWF 219
           C   I +Q   IL S+  G S    F   ++  +++ FW W  +LWF
Sbjct: 276 CMHYIRYQRKSILASK--GTS----FFMNKWKCYLVTFWQWHFSLWF 316

>MATK_OTACA (Q5GAB0) Maturase K (Intron maturase)|
          Length = 509

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFMQYTSHILVFWDWSVTLWF 219
           C   + +Q   IL S+          L  ++ S+++ FW W  ++WF
Sbjct: 274 CMHYVRYQRKSILASKGVS------LLINKWKSYLVAFWQWHFSMWF 314

>MATK_BARAL (Q5I6K6) Maturase K (Intron maturase)|
          Length = 510

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWFF 222
           C   I +Q   IL S+  G S     LFM ++  +++ FW W  +LWF+
Sbjct: 275 CIHYIRYQRKFILASK--GTS-----LFMNKWKCYLITFWQWHFSLWFY 316

>MATK_PROLU (Q7YKM5) Maturase K (Intron maturase)|
          Length = 500

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWF 219
           C   I +Q   IL S+  G S     LFM ++  +++ FW W  +LWF
Sbjct: 265 CMHYIRYQRKSILASK--GTS-----LFMNKWKCYLVTFWQWHFSLWF 305

>MATK_MIMAU (Q5I6K1) Maturase K (Intron maturase)|
          Length = 511

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWF 219
           C   I +Q   IL S+  G S     LFM ++  +++ FW W  +LWF
Sbjct: 276 CMHYIRYQRKSILASK--GTS-----LFMNKWKCYLVTFWQWHFSLWF 316

>MATK_LATCL (Q9TIR8) Maturase K (Intron maturase)|
          Length = 511

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 154 FLFMQ-YTSHILVFWDWSVTLWFF 222
           FLF++ +  ++++FW W  +LWF+
Sbjct: 294 FLFVKKWKCYLIIFWQWHFSLWFY 317

>MATK_HARGR (Q7YJZ1) Maturase K (Intron maturase)|
          Length = 506

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWF 219
           C   I +Q   IL S+  G S     LFM ++  +++ FW W  +LWF
Sbjct: 274 CMHYIRYQRKSILASK--GTS-----LFMNKWKCYLVTFWQWHFSLWF 314

>MATK_KIGAF (Q9TIR9) Maturase K (Intron maturase)|
          Length = 509

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 52  YTREGCMTFCYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWF 219
           + +E CM +    I +Q   IL S+  G S     LFM ++  +++ FW W   LWF
Sbjct: 269 FVKEPCMHY----IRYQRKSILASK--GTS-----LFMNKWKCYLVTFWQWHFXLWF 314

>MATK_IBILU (Q7YKQ2) Maturase K (Intron maturase)|
          Length = 509

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 52  YTREGCMTFCYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWF 219
           + +E CM +    I +Q   IL S+  G S     LFM ++  + + FW W  +LWF
Sbjct: 269 FVKEPCMHY----IRYQRKSILASK--GTS-----LFMNKWKCYFVTFWQWHFSLWF 314

>MATK_MIMGU (Q5GA98) Maturase K (Intron maturase)|
          Length = 512

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWF 219
           C   I +Q   IL S+  G S     LFM ++ S+++ FW W  + WF
Sbjct: 277 CMHYIRYQRKSILASK--GTS-----LFMNKWKSYLVAFWQWHFSQWF 317

>MATK_ARTFM (Q5GAA9) Maturase K (Intron maturase)|
          Length = 506

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFMQYTSHILVFWDWSVTLWF 219
           C   + +Q   IL S+  G S     L  ++  +++ FW W  +LWF
Sbjct: 274 CMHYVRYQRKSILASK--GTS----VLMNKWKCYLVTFWQWHFSLWF 314

>MATK_CAMRA (Q7YKQ5) Maturase K (Intron maturase)|
          Length = 511

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWF 219
           C   I +Q   +L S+  G S     LFM ++  +++ FW W  +LWF
Sbjct: 276 CMHYIRYQRKSLLASK--GTS-----LFMNKWKCYLVTFWQWHFSLWF 316

>MATK_JACMI (Q8M9H0) Maturase K (Intron maturase)|
          Length = 509

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFM-QYTSHILVFWDWSVTLWF 219
           C   I +Q   IL S+          LFM ++  +++ FW W  +LWF
Sbjct: 274 CMHYIRYQRKSILASKGTA-------LFMNKWKCYLVTFWQWHFSLWF 314

>MATK_EPIVI (P30071) Maturase K (Intron maturase)|
          Length = 439

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 166 QYTSHILVFWDWSVTLWFFKAS 231
           ++  +++ FW W  +LWFF  S
Sbjct: 232 KWKCYVITFWQWYFSLWFFSRS 253

>CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561)|
          Length = 266

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 471 FFFPKAAPNVRKGALPWHVLLXIFVYILALATAELGFLEK 352
           +FFP     +R+  +P+H +  + ++I    T  +G  E+
Sbjct: 161 YFFPGMPIPIRQLVMPFHQMFGVLIFIFVSITVAMGISER 200

>MATK_GRAOF (Q7YKQ3) Maturase K (Intron maturase)|
          Length = 510

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +1

Query: 79  CYQIIHFQSXEILLSQHYGDS*LCEFLFMQYTSHILVFWDWSVTLWF 219
           C   + +Q   I  S           L  ++ S+++ FW W  ++WF
Sbjct: 275 CMHYVRYQRKSIWASNG------ASLLIKKWKSYLVAFWQWHFSMWF 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,232,809
Number of Sequences: 219361
Number of extensions: 1140796
Number of successful extensions: 3627
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3625
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)