ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25c20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G156_PARPR (P13837) G surface protein, allelic form 156 precursor 33 0.64
2G168_PARPR (P17053) G surface protein, allelic form 168 precursor 32 1.1
3VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21 32 1.4
4HMDH_CRIGR (P00347) 3-hydroxy-3-methylglutaryl-coenzyme A reduct... 30 3.2
5LRP4_RAT (Q9QYP1) Low-density lipoprotein receptor-related prote... 30 4.1
6LRP4_HUMAN (O75096) Low-density lipoprotein receptor-related pro... 30 5.4

>G156_PARPR (P13837) G surface protein, allelic form 156 precursor|
          Length = 2715

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
 Frame = +3

Query: 147  CFSLQDSCPKASLIAAMAARYLLLCSRYRPSLTNRCAVSS-----NPSNHCCSERSSTNN 311
            C + Q SC  A L A  A      C+ Y+ SL  +   S      NP+N  C + +  N 
Sbjct: 1765 CSTYQQSCTVARLGACQARA---ACATYKSSLQCKFNTSGGKCFWNPTNKTCVDLNCGNI 1821

Query: 312  RATTKEKDSGECI 350
             ATT      EC+
Sbjct: 1822 EATTLYDTHNECV 1834



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>G168_PARPR (P17053) G surface protein, allelic form 168 precursor|
          Length = 2704

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +3

Query: 147  CFSLQDSCPKASLIAAMAARYLLLCSRYRPSLTNRCAVSS-----NPSNHCCSERSSTNN 311
            C + Q SC  A L A  A      C+ Y+ SL  +   S      NP+N  C + +  N 
Sbjct: 1754 CSAYQQSCTVARLGACQARA---ACASYKSSLQCKFNTSGGRCFWNPTNKTCVDLNCGNI 1810

Query: 312  RATTKEKDSGECILL 356
             A+T      EC+++
Sbjct: 1811 EASTLYDTHNECVVV 1825



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>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21|
          Length = 1629

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -2

Query: 388  KLVVDHQARQLSRMHSPESFSLVVARLFVEDRSEQQWLLGLDDTAQRLVREGRY 227
            +L V HQ R  S    P       ++ F E RS  QW +  DD  + LVRE  Y
Sbjct: 1015 RLYVGHQFRPPSEYPMP-------SQSFFECRSPSQWTIAEDDELRSLVREHSY 1061



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>HMDH_CRIGR (P00347) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC|
           1.1.1.34) (HMG-CoA reductase)
          Length = 887

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 375 STTSFQLSLSESIVTFFRCPSTCCIRHPRLLESGESLS 488
           ST S +  ++  +VT  + P  CC R P L+   E LS
Sbjct: 346 STLSLKNPITSPVVTPKKAPDNCCRREPLLVRRSEKLS 383



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>LRP4_RAT (Q9QYP1) Low-density lipoprotein receptor-related protein 4 precursor|
            (Multiple epidermal growth factor-like domains 7)
          Length = 1905

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 210  LLLCSRYRPSLTNRCAVSSNPSNHCCSERSSTNNRATTKEKDSGECILL 356
            +++ S  R + TN C V++   +H C  R+S    A   E DS  C L+
Sbjct: 1603 IIVVSPQRQTGTNACGVNNGGCSHLCFARASDFVCACPDEPDSHPCSLV 1651



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>LRP4_HUMAN (O75096) Low-density lipoprotein receptor-related protein 4 precursor|
            (Multiple epidermal growth factor-like domains 7)
          Length = 1950

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 210  LLLCSRYRPSLTNRCAVSSNPSNHCCSERSSTNNRATTKEKDSGECILL 356
            +++ S  R + TN C V++    H C  R+S    A   E DS  C L+
Sbjct: 1648 IIVVSPQRQTGTNACGVNNGGCTHLCFARASDFVCACPDEPDSRPCSLV 1696


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,642,965
Number of Sequences: 219361
Number of extensions: 1475571
Number of successful extensions: 4043
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4041
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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