| Clone Name | rbaal25c20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence Length = 188853 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 gaagtttcaccacaaaacaaac 28 |||||||||||||||||||||| Sbjct: 120599 gaagtttcaccacaaaacaaac 120620
>dbj|AK084578.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330016N20 product:unclassifiable, full insert sequence Length = 2076 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 gaagtttcaccacaaaacaaac 28 |||||||||||||||||||||| Sbjct: 1688 gaagtttcaccacaaaacaaac 1667
>gb|AC150658.7| Mus musculus BAC clone RP24-474E20 from chromosome y, complete sequence Length = 204836 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 agaaagaagcaaaatattaaa 78 ||||||||||||||||||||| Sbjct: 146109 agaaagaagcaaaatattaaa 146129
>gb|AC145570.3| Mus musculus BAC clone RP24-95K23 from chromosome Y, complete sequence Length = 168764 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 agaaagaagcaaaatattaaa 78 ||||||||||||||||||||| Sbjct: 102537 agaaagaagcaaaatattaaa 102557
>gb|AC147135.2| Mus musculus BAC clone RP24-475E12 from chromosome Y, complete sequence Length = 222469 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agaaagaagcaaaatattaaa 78 ||||||||||||||||||||| Sbjct: 201393 agaaagaagcaaaatattaaa 201373 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agaaagaagcaaaatattaaa 78 ||||||||||||||||||||| Sbjct: 155135 agaaagaagcaaaatattaaa 155115
>gb|AC140386.4| Mus musculus BAC clone RP24-88H19 from chromosome Y, complete sequence Length = 222469 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agaaagaagcaaaatattaaa 78 ||||||||||||||||||||| Sbjct: 201393 agaaagaagcaaaatattaaa 201373 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agaaagaagcaaaatattaaa 78 ||||||||||||||||||||| Sbjct: 155135 agaaagaagcaaaatattaaa 155115
>emb|AL096829.17|HSJ595K12 Human DNA sequence from clone RP4-595K12 on chromosome 1p31.2-31.3 Contains the 5' end of a novel gene (MGC34032) and a ribosomal protein L29 (RPL29) pseudogene, complete sequence Length = 135983 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 aaagaagcaaaatattaaact 80 ||||||||||||||||||||| Sbjct: 34661 aaagaagcaaaatattaaact 34681
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 ggcgtccctgatcgccgctat 196 ||||||||||||||||||||| Sbjct: 1229062 ggcgtccctgatcgccgctat 1229042
>gb|AC120393.16| Mus musculus chromosome 7, clone RP24-312B12, complete sequence Length = 183977 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 atatacaatatatacacatta 58 ||||||||||||||||||||| Sbjct: 171173 atatacaatatatacacatta 171193
>gb|AC174641.3| Mus musculus BAC clone RP24-406C15 from chromosome y, complete sequence Length = 174265 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agaaagaagcaaaatattaaa 78 ||||||||||||||||||||| Sbjct: 61870 agaaagaagcaaaatattaaa 61850 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agaaagaagcaaaatattaaa 78 ||||||||||||||||||||| Sbjct: 15613 agaaagaagcaaaatattaaa 15593
>gb|AC150659.3| Mus musculus BAC clone RP24-147D24 from Y, complete sequence Length = 145892 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agaaagaagcaaaatattaaa 78 ||||||||||||||||||||| Sbjct: 133370 agaaagaagcaaaatattaaa 133350
>gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, complete sequence Length = 149493 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 78170 tttcaccacaaaacaaacat 78151
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 tgaaagcattgtcacgttct 423 |||||||||||||||||||| Sbjct: 1129224 tgaaagcattgtcacgttct 1129205
>gb|AC149290.1| Solanum demissum chromosome 5 clone PGEC093P17 map MAP_LOC, complete sequence Length = 200238 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 58 agaaagaagcaaaatattaaactacaat 85 ||||| ||||| |||||||||||||||| Sbjct: 36502 agaaataagcataatattaaactacaat 36475
>gb|AC149301.1| Solanum demissum chromosome 5 clone PGEC517A09 map MAP_LOC, complete sequence Length = 133983 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 58 agaaagaagcaaaatattaaactacaat 85 ||||| ||||| |||||||||||||||| Sbjct: 112529 agaaataagcataatattaaactacaat 112502
>gb|AC159430.1| Trypanosoma brucei chromosome 3 clone RPCI93-28C22, complete sequence Length = 142068 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 tgaaagcattgtcacgttct 423 |||||||||||||||||||| Sbjct: 18353 tgaaagcattgtcacgttct 18372
>gb|AC161598.4| Mus musculus BAC clone RP23-360G8 from chromosome 7, complete sequence Length = 216748 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 atatacaatatatacacatt 57 |||||||||||||||||||| Sbjct: 90072 atatacaatatatacacatt 90091
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 8069955 tttcaccacaaaacaaacat 8069974
>gb|AC129221.3| Mus musculus BAC clone RP24-480M20 from chromosome 7, complete sequence Length = 202119 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 atatacaatatatacacatt 57 |||||||||||||||||||| Sbjct: 155537 atatacaatatatacacatt 155518
>emb|CT010488.9| Mouse DNA sequence from clone RP23-133A3 on chromosome 9, complete sequence Length = 219139 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 480 tctctgtcagtcagtacctgaattcttg 507 ||||||||||| ||| |||||||||||| Sbjct: 176674 tctctgtcagtaagttcctgaattcttg 176647
>ref|XM_819207.1| Trypanosoma brucei TREU927 clone RPCI93-28C22 phosphatidylinositol 4-kinase alpha (Tb927.3.4020) partial mRNA Length = 6939 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 tgaaagcattgtcacgttct 423 |||||||||||||||||||| Sbjct: 4925 tgaaagcattgtcacgttct 4944
>gb|AC127576.3| Mus musculus BAC clone RP24-242F12 from chromosome 7, complete sequence Length = 169210 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 atatacaatatatacacatt 57 |||||||||||||||||||| Sbjct: 139505 atatacaatatatacacatt 139486
>gb|AC127675.4| Mus musculus BAC clone RP24-553O5 from chromosome 7, complete sequence Length = 155097 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 atatacaatatatacacatt 57 |||||||||||||||||||| Sbjct: 107801 atatacaatatatacacatt 107820
>gb|AC004535.1| Homo sapiens PAC clone RP4-698G21 from 7, complete sequence Length = 109469 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cattagaaagaagcaaaata 73 |||||||||||||||||||| Sbjct: 84339 cattagaaagaagcaaaata 84358
>gb|AC157380.6| Mus musculus chromosome 3, clone RP23-404C21, complete sequence Length = 196528 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 agaaagaagcaaaatattaaacta 81 |||||||| ||||||||||||||| Sbjct: 112596 agaaagaatcaaaatattaaacta 112619
>gb|AC164645.4| Mus musculus BAC clone RP24-478G6 from chromosome 7, complete sequence Length = 211510 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 atatacaatatatacacatt 57 |||||||||||||||||||| Sbjct: 188405 atatacaatatatacacatt 188386
>gb|AC022114.4| Homo sapiens chromosome 5 clone CTC-470L9, complete sequence Length = 102387 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tctaccactagtttccagtt 394 |||||||||||||||||||| Sbjct: 1118 tctaccactagtttccagtt 1137
>gb|AC008850.7| Homo sapiens chromosome 5 clone CTD-2172I6, complete sequence Length = 131805 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tctaccactagtttccagtt 394 |||||||||||||||||||| Sbjct: 107214 tctaccactagtttccagtt 107233
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 1677263 tttcaccacaaaacaaacat 1677244
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 1723163 tttcaccacaaaacaaacat 1723144
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 8067790 tttcaccacaaaacaaacat 8067809
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 1385 tttcaccacaaaacaaacat 1404
>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0081I10, complete sequence Length = 143298 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 137318 tttcaccacaaaacaaacat 137337
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 aggtgcccttccacctgctg 445 |||||||||||||||||||| Sbjct: 1179834 aggtgcccttccacctgctg 1179853
>emb|AL604064.10| Zebrafish DNA sequence from clone BUSM1-180G5 in linkage group 3, complete sequence Length = 136041 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 tttgtgaagtttcaccacaaaaca 25 |||||||| ||||||||||||||| Sbjct: 73886 tttgtgaattttcaccacaaaaca 73909
>dbj|AP001120.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-677O4, complete sequence Length = 181123 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 atatacacattagaaagaagcaaa 70 |||||||||||||||| ||||||| Sbjct: 73807 atatacacattagaaaaaagcaaa 73784
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 1720884 tttcaccacaaaacaaacat 1720865
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 1677241 tttcaccacaaaacaaacat 1677222
>gb|AC149056.6| Mus musculus BAC clone RP23-344G11 from chromosome 7, complete sequence Length = 199549 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 atatacaatatatacacatt 57 |||||||||||||||||||| Sbjct: 71725 atatacaatatatacacatt 71706
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 89658 tttcaccacaaaacaaacat 89677
>emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 91883 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tttcaccacaaaacaaacat 30 |||||||||||||||||||| Sbjct: 15661 tttcaccacaaaacaaacat 15680
>gb|AC149279.3| Mus musculus BAC clone RP24-89F23 from 7, complete sequence Length = 210311 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 atatacaatatatacacatt 57 |||||||||||||||||||| Sbjct: 82011 atatacaatatatacacatt 81992
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 439 cctgctgcatcaggcaccccaggt 462 |||| ||||||||||||||||||| Sbjct: 113994 cctggtgcatcaggcaccccaggt 114017 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,741,323 Number of Sequences: 3902068 Number of extensions: 4741323 Number of successful extensions: 95983 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95664 Number of HSP's gapped (non-prelim): 319 length of query: 530 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 507 effective length of database: 17,143,297,704 effective search space: 8691651935928 effective search space used: 8691651935928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)