| Clone Name | rbaal25c14 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X57407.1|TAPPSBP Wheat PsbP mRNA for 23 kDa oxygen evolving protein of photosystem II Length = 967 Score = 759 bits (383), Expect = 0.0 Identities = 459/480 (95%), Gaps = 6/480 (1%) Strand = Plus / Minus Query: 1 ttgtgcacacatgaatccttgn-gggaaatcgacctcttagttcatccatcctcatgtac 59 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 949 ttgtgcacacatgaatccttgaagggaaatcgacctcttagttcatccatcctcatgtac 890 Query: 60 aaatcaaagaaacacacatgcatgccctggatcggtctctacacggtgcttccctgagga 119 ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct: 889 aaatcaaagaaacacacatgcatgccctg-atcggtctctacatggtgcatccctgagga 831 Query: 120 gatt-ccattaaattcgccgatcggtcatgtatatttatgcgacactgaaggatcctgcg 178 ||| |||||||| |||||| |||||| |||||||||||||||| ||||||||||||||| Sbjct: 830 aatttccattaaactcgccggtcggtcgtgtatatttatgcgacgctgaaggatcctgcg 771 Query: 179 gcgttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttg 238 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 770 gcgttctcgacgaacttcttggcgcccttgaaccacctcttgtctcg---ttgcgccttg 714 Query: 239 cagacgtagagcttgccgtcggcgacggtggcggtgatgagctggtgcttccctccctcg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 713 cagacgtagagcttgccgtcggcgacggtggcggtgatgagctggtgcttccctccctcg 654 Query: 299 tctccgtccgcggtcctggtgagcaccgttatgctgtagtactgcttaccgtccaccacc 358 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 653 tctccgtccgcggtcctcgtgagcaccgttatgctgtagtactgcttaccgtccaccacc 594 Query: 359 ggcgccgagctctcgagcacgttggccgtcgccacagcgtctgactcgaagccgccctcg 418 |||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||| Sbjct: 593 ggcgccgagctctccagcacgttcgccgtcgccacagcgtctgactcgaacccaccctcg 534 Query: 419 gagtcggtcttgccgccgtaggactgctggccgaggaggaagccgacctgggagaggaac 478 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 533 gagtcggtcttgccaccgtaggactgctggccgaggaggaagccgacctgggagaggaac 474
>ref|NM_186247.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1114 Score = 283 bits (143), Expect = 3e-73 Identities = 278/323 (86%) Strand = Plus / Minus Query: 156 atgcgacactgaaggatcctgcggcgttctcgacgaacttcttggcgcccttgaaccacc 215 ||||||| |||||||| | || ||| |||||||||||||| |||||||||||||||||| Sbjct: 872 atgcgacgctgaaggagctggctgcgctctcgacgaacttcctggcgcccttgaaccacc 813 Query: 216 tcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcgacggtggcggtga 275 ||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct: 812 tcttgtcgccggcctgcgccttgcagatgtacagcttgccgtcgttgacggtggccgtga 753 Query: 276 tgagctggtgcttccctccctcgtctccgtccgcggtcctggtgagcaccgttatgctgt 335 | ||||||||||| || |||||||| |||||||| ||||| || |||||||||| ||||| Sbjct: 752 tcagctggtgcttgccgccctcgtcgccgtccgccgtcctcgtcagcaccgttacgctgt 693 Query: 336 agtactgcttaccgtccaccaccggcgccgagctctcgagcacgttggccgtcgccacag 395 |||||||||| || |||||||||||||||||||||| || | ||| ||||||||||| | Sbjct: 692 agtactgcttccctcccaccaccggcgccgagctctccaggatgttcgccgtcgccaccg 633 Query: 396 cgtctgactcgaagccgccctcggagtcggtcttgccgccgtaggactgctggccgagga 455 |||| ||||| || || |||||||| || ||||||||| ||||| ||||| ||| || | Sbjct: 632 cgtccgactcaaacccaccctcggaatctgtcttgccggagtaggcctgcttgccaagca 573 Query: 456 ggaagccgacctgggagaggaac 478 |||| ||||||||| ||||||| Sbjct: 572 agaagtcgacctgggcgaggaac 550
>dbj|AK104722.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B02, full insert sequence Length = 1078 Score = 283 bits (143), Expect = 3e-73 Identities = 278/323 (86%) Strand = Plus / Minus Query: 156 atgcgacactgaaggatcctgcggcgttctcgacgaacttcttggcgcccttgaaccacc 215 ||||||| |||||||| | || ||| |||||||||||||| |||||||||||||||||| Sbjct: 828 atgcgacgctgaaggagctggctgcgctctcgacgaacttcctggcgcccttgaaccacc 769 Query: 216 tcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcgacggtggcggtga 275 ||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct: 768 tcttgtcgccggcctgcgccttgcagatgtacagcttgccgtcgttgacggtggccgtga 709 Query: 276 tgagctggtgcttccctccctcgtctccgtccgcggtcctggtgagcaccgttatgctgt 335 | ||||||||||| || |||||||| |||||||| ||||| || |||||||||| ||||| Sbjct: 708 tcagctggtgcttgccgccctcgtcgccgtccgccgtcctcgtcagcaccgttacgctgt 649 Query: 336 agtactgcttaccgtccaccaccggcgccgagctctcgagcacgttggccgtcgccacag 395 |||||||||| || |||||||||||||||||||||| || | ||| ||||||||||| | Sbjct: 648 agtactgcttccctcccaccaccggcgccgagctctccaggatgttcgccgtcgccaccg 589 Query: 396 cgtctgactcgaagccgccctcggagtcggtcttgccgccgtaggactgctggccgagga 455 |||| ||||| || || |||||||| || ||||||||| ||||| ||||| ||| || | Sbjct: 588 cgtccgactcaaacccaccctcggaatctgtcttgccggagtaggcctgcttgccaagca 529 Query: 456 ggaagccgacctgggagaggaac 478 |||| ||||||||| ||||||| Sbjct: 528 agaagtcgacctgggcgaggaac 506
>dbj|AK065248.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J02, full insert sequence Length = 1114 Score = 283 bits (143), Expect = 3e-73 Identities = 278/323 (86%) Strand = Plus / Minus Query: 156 atgcgacactgaaggatcctgcggcgttctcgacgaacttcttggcgcccttgaaccacc 215 ||||||| |||||||| | || ||| |||||||||||||| |||||||||||||||||| Sbjct: 872 atgcgacgctgaaggagctggctgcgctctcgacgaacttcctggcgcccttgaaccacc 813 Query: 216 tcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcgacggtggcggtga 275 ||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct: 812 tcttgtcgccggcctgcgccttgcagatgtacagcttgccgtcgttgacggtggccgtga 753 Query: 276 tgagctggtgcttccctccctcgtctccgtccgcggtcctggtgagcaccgttatgctgt 335 | ||||||||||| || |||||||| |||||||| ||||| || |||||||||| ||||| Sbjct: 752 tcagctggtgcttgccgccctcgtcgccgtccgccgtcctcgtcagcaccgttacgctgt 693 Query: 336 agtactgcttaccgtccaccaccggcgccgagctctcgagcacgttggccgtcgccacag 395 |||||||||| || |||||||||||||||||||||| || | ||| ||||||||||| | Sbjct: 692 agtactgcttccctcccaccaccggcgccgagctctccaggatgttcgccgtcgccaccg 633 Query: 396 cgtctgactcgaagccgccctcggagtcggtcttgccgccgtaggactgctggccgagga 455 |||| ||||| || || |||||||| || ||||||||| ||||| ||||| ||| || | Sbjct: 632 cgtccgactcaaacccaccctcggaatctgtcttgccggagtaggcctgcttgccaagca 573 Query: 456 ggaagccgacctgggagaggaac 478 |||| ||||||||| ||||||| Sbjct: 572 agaagtcgacctgggcgaggaac 550
>gb|AF052203.1|AF052203 Oryza sativa 23 kDa polypeptide of photosystem II mRNA, complete cds Length = 1107 Score = 283 bits (143), Expect = 3e-73 Identities = 278/323 (86%) Strand = Plus / Minus Query: 156 atgcgacactgaaggatcctgcggcgttctcgacgaacttcttggcgcccttgaaccacc 215 ||||||| |||||||| | || ||| |||||||||||||| |||||||||||||||||| Sbjct: 847 atgcgacgctgaaggagctggctgcgctctcgacgaacttcctggcgcccttgaaccacc 788 Query: 216 tcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcgacggtggcggtga 275 ||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct: 787 tcttgtcgccggcctgcgccttgcagatgtacagcttgccgtcgttgacggtggccgtga 728 Query: 276 tgagctggtgcttccctccctcgtctccgtccgcggtcctggtgagcaccgttatgctgt 335 | ||||||||||| || |||||||| |||||||| ||||| || |||||||||| ||||| Sbjct: 727 tcagctggtgcttgccgccctcgtcgccgtccgccgtcctcgtcagcaccgttacgctgt 668 Query: 336 agtactgcttaccgtccaccaccggcgccgagctctcgagcacgttggccgtcgccacag 395 |||||||||| || |||||||||||||||||||||| || | ||| ||||||||||| | Sbjct: 667 agtactgcttccctcccaccaccggcgccgagctctccaggatgttcgccgtcgccaccg 608 Query: 396 cgtctgactcgaagccgccctcggagtcggtcttgccgccgtaggactgctggccgagga 455 |||| ||||| || || |||||||| || ||||||||| ||||| ||||| ||| || | Sbjct: 607 cgtccgactcaaacccaccctcggaatctgtcttgccggagtaggcctgcttgccaagca 548 Query: 456 ggaagccgacctgggagaggaac 478 |||| ||||||||| ||||||| Sbjct: 547 agaagtcgacctgggcgaggaac 525
>gb|AY103732.1| Zea mays PCO073407 mRNA sequence Length = 1083 Score = 260 bits (131), Expect = 4e-66 Identities = 260/303 (85%) Strand = Plus / Minus Query: 176 gcggcgttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgcc 235 ||||| |||||||| |||| ||||||||||||||||||||||||| ||||| |||||| Sbjct: 830 gcggccttctcgactcccttcctggcgcccttgaaccacctcttgtcgccggcctgcgcc 771 Query: 236 ttgcagacgtagagcttgccgtcggcgacggtggcggtgatgagctggtgcttccctccc 295 ||||||| ||||||||||||||||| ||||||||| | ||||||||||||||| || ||| Sbjct: 770 ttgcagatgtagagcttgccgtcggagacggtggccgcgatgagctggtgcttgccgccc 711 Query: 296 tcgtctccgtccgcggtcctggtgagcaccgttatgctgtagtactgcttaccgtccacc 355 ||||| |||||||| |||||||||||||| | | | |||||||||||| ||||| | | Sbjct: 710 tcgtcgccgtccgccgtcctggtgagcacggacacggcgtagtactgcttgccgtcgatc 651 Query: 356 accggcgccgagctctcgagcacgttggccgtcgccacagcgtctgactcgaagccgccc 415 || || | |||||||| || |||||||| || ||||| ||| | | |||||| |||||| Sbjct: 650 acgggggtggagctctccaggacgttggcggtggccacggcgccggtctcgaacccgccc 591 Query: 416 tcggagtcggtcttgccgccgtaggactgctggccgaggaggaagccgacctgggagagg 475 ||||||||||||||||||||||||| |||| |||||| ||| || |||||||||||||| Sbjct: 590 tcggagtcggtcttgccgccgtaggcctgcctgccgagcaggtagtcgacctgggagagg 531 Query: 476 aac 478 ||| Sbjct: 530 aac 528
>dbj|D49713.1|RICOSEE2 Rice OSOEE2 gene for 23 kDa polypeptide of photosystem II, complete cds Length = 1008 Score = 252 bits (127), Expect = 9e-64 Identities = 277/323 (85%), Gaps = 3/323 (0%) Strand = Plus / Minus Query: 156 atgcgacactgaaggatcctgcggcgttctcgacgaacttcttggcgcccttgaaccacc 215 ||||||| |||||||| | || ||| |||||||||||||| |||||||||||||||||| Sbjct: 786 atgcgacgctgaaggagctggctgcgctctcgacgaacttcctggcgcccttgaaccacc 727 Query: 216 tcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcgacggtggcggtga 275 ||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct: 726 tcttgtcgccggcctgcgccttgcagatgtacagcttgccgtcgttgacggtggccgtga 667 Query: 276 tgagctggtgcttccctccctcgtctccgtccgcggtcctggtgagcaccgttatgctgt 335 | ||||||||||| | |||||||| |||||||| ||||| || |||||||||| ||||| Sbjct: 666 tcagctggtgctt-gcgccctcgtcgccgtccgccgtcctcgtcagcaccgttacgctgt 608 Query: 336 agtactgcttaccgtccaccaccggcgccgagctctcgagcacgttggccgtcgccacag 395 ||||| |||| || ||||||||||||||||||||||| || | ||| ||||||||||| | Sbjct: 607 agtac-gctt-ccctccaccaccggcgccgagctctccaggatgttcgccgtcgccaccg 550 Query: 396 cgtctgactcgaagccgccctcggagtcggtcttgccgccgtaggactgctggccgagga 455 |||| ||||| || || |||||||| || ||||||||| ||||| ||||| ||| || | Sbjct: 549 cgtccgactcaaacccaccctcggaatctgtcttgccggagtaggcctgcttgccaagca 490 Query: 456 ggaagccgacctgggagaggaac 478 |||| ||||||||| ||||||| Sbjct: 489 agaagtcgacctgggcgaggaac 467
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 250 bits (126), Expect = 4e-63 Identities = 219/250 (87%) Strand = Plus / Plus Query: 156 atgcgacactgaaggatcctgcggcgttctcgacgaacttcttggcgcccttgaaccacc 215 ||||||| |||||||| | || ||| |||||||||||||| |||||||||||||||||| Sbjct: 2169273 atgcgacgctgaaggagctggctgcgctctcgacgaacttcctggcgcccttgaaccacc 2169332 Query: 216 tcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcgacggtggcggtga 275 ||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct: 2169333 tcttgtcgccggcctgcgccttgcagatgtacagcttgccgtcgttgacggtggccgtga 2169392 Query: 276 tgagctggtgcttccctccctcgtctccgtccgcggtcctggtgagcaccgttatgctgt 335 | ||||||||||| || |||||||| |||||||| ||||| || |||||||||| ||||| Sbjct: 2169393 tcagctggtgcttgccgccctcgtcgccgtccgccgtcctcgtcagcaccgttacgctgt 2169452 Query: 336 agtactgcttaccgtccaccaccggcgccgagctctcgagcacgttggccgtcgccacag 395 |||||||||| || |||||||||||||||||||||| || | ||| ||||||||||| | Sbjct: 2169453 agtactgcttccctcccaccaccggcgccgagctctccaggatgttcgccgtcgccaccg 2169512 Query: 396 cgtctgactc 405 |||| ||||| Sbjct: 2169513 cgtccgactc 2169522
>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1351_C05 Length = 112465 Score = 250 bits (126), Expect = 4e-63 Identities = 219/250 (87%) Strand = Plus / Plus Query: 156 atgcgacactgaaggatcctgcggcgttctcgacgaacttcttggcgcccttgaaccacc 215 ||||||| |||||||| | || ||| |||||||||||||| |||||||||||||||||| Sbjct: 37175 atgcgacgctgaaggagctggctgcgctctcgacgaacttcctggcgcccttgaaccacc 37234 Query: 216 tcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcgacggtggcggtga 275 ||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct: 37235 tcttgtcgccggcctgcgccttgcagatgtacagcttgccgtcgttgacggtggccgtga 37294 Query: 276 tgagctggtgcttccctccctcgtctccgtccgcggtcctggtgagcaccgttatgctgt 335 | ||||||||||| || |||||||| |||||||| ||||| || |||||||||| ||||| Sbjct: 37295 tcagctggtgcttgccgccctcgtcgccgtccgccgtcctcgtcagcaccgttacgctgt 37354 Query: 336 agtactgcttaccgtccaccaccggcgccgagctctcgagcacgttggccgtcgccacag 395 |||||||||| || |||||||||||||||||||||| || | ||| ||||||||||| | Sbjct: 37355 agtactgcttccctcccaccaccggcgccgagctctccaggatgttcgccgtcgccaccg 37414 Query: 396 cgtctgactc 405 |||| ||||| Sbjct: 37415 cgtccgactc 37424
>gb|AF022732.1|AF022732 Oryza sativa 23kDa polypeptide of photosystem II mRNA, complete cds Length = 1031 Score = 242 bits (122), Expect = 9e-61 Identities = 272/322 (84%) Strand = Plus / Minus Query: 156 atgcgacactgaaggatcctgcggcgttctcgacgaacttcttggcgcccttgaaccacc 215 ||||||| |||||||| | || ||| ||||||| |||||| |||||||||||||||||| Sbjct: 830 atgcgacgctgaaggagctggctgcgctctcgacaaacttcctggcgcccttgaaccacc 771 Query: 216 tcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcgacggtggcggtga 275 ||||||| |||| ||||||||||||| || |||||||||||| ||||||||| |||| Sbjct: 770 tcttgtcgccgggctgcgccttgcagatgttcagcttgccgtcgttgacggtggccgtga 711 Query: 276 tgagctggtgcttccctccctcgtctccgtccgcggtcctggtgagcaccgttatgctgt 335 | ||||||||||| || |||||||| |||||||| ||||| || |||||||||| ||||| Sbjct: 710 tcagctggtgcttgccgccctcgtcgccgtccgccgtcctcgtcagcaccgttacgctgt 651 Query: 336 agtactgcttaccgtccaccaccggcgccgagctctcgagcacgttggccgtcgccacag 395 ||||||||| || |||||||||||||||||||||| || | ||| ||||||||||| | Sbjct: 650 ggtactgcttccctcccaccaccggcgccgagctctccaggatgttcgccgtcgccaccg 591 Query: 396 cgtctgactcgaagccgccctcggagtcggtcttgccgccgtaggactgctggccgagga 455 |||| ||||| || || |||||||| || ||||||||| ||||| ||||| ||| || | Sbjct: 590 cgtccgactcaaacccaccctcggaatctgtcttgccggagtaggcctgcttgccaagca 531 Query: 456 ggaagccgacctgggagaggaa 477 |||| |||| |||| |||||| Sbjct: 530 agaagtcgacttgggggaggaa 509
>gb|AF037458.1|AF037458 Fritillaria agrestis photosystem II oxygen evolving complex protein 2 precursor (psbP) mRNA, complete cds Length = 970 Score = 87.7 bits (44), Expect = 3e-14 Identities = 107/128 (83%) Strand = Plus / Minus Query: 191 aacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcagacgtagagc 250 ||||||||||| ||||||||||| |||||||| ||||| || |||||||||| ||||||| Sbjct: 767 aacttcttggctcccttgaaccatctcttgtccccggcctgtgccttgcagatgtagagc 708 Query: 251 ttgccgtcggcgacggtggcggtgatgagctggtgcttccctccctcgtctccgtccgcg 310 || || || | ||| || |||| ||| | |||||||| ||||| || |||||||| || Sbjct: 707 ttaccatctgtgacagttgcggagataacatggtgcttgcctccttcatctccgtcagca 648 Query: 311 gtcctggt 318 |||||||| Sbjct: 647 gtcctggt 640
>emb|X05511.1|SOOEC23 Spinach mRNA 23 kDa protein of the photosynthetic oxygen-evolving complex (OEC) Length = 1000 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| |||||||| || ||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 806 tctcgacaaacttcttagcacccttgaaccatctcttgtctccagcttgagccttgcaga 747 Query: 243 cgtagagcttgccgtc 258 ||| ||||| ||||| Sbjct: 746 tgtaaagcttaccgtc 731
>ref|NM_100545.2| Arabidopsis thaliana PSBP (OXYGEN-EVOLVING ENHANCER PROTEIN 2); calcium ion binding AT1G06680 (PSBP) mRNA, complete cds Length = 1085 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 824 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 765 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 764 tgtaaagctt 755
>gb|BT015556.1| Arabidopsis thaliana At1g06680 mRNA sequence Length = 561 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 532 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 473 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 472 tgtaaagctt 463
>gb|AY096487.1| Arabidopsis thaliana putative 23 kDa polypeptide of oxygen-evolving complex (OEC) (At1g06680) mRNA, complete cds Length = 823 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 763 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 704 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 703 tgtaaagctt 694
>gb|AY074308.1| Arabidopsis thaliana putative 23 kDa polypeptide of oxygen-evolving comlex protein (At1g06680) mRNA, complete cds Length = 1046 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 820 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 761 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 760 tgtaaagctt 751
>gb|AY070469.1| Arabidopsis thaliana At1g06680/F4H5_18 mRNA, complete cds Length = 937 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 818 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 759 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 758 tgtaaagctt 749
>gb|AY056416.1| Arabidopsis thaliana At1g06680/F4H5_18 mRNA, complete cds Length = 935 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 818 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 759 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 758 tgtaaagctt 749
>dbj|AK221243.1| Arabidopsis thaliana mRNA for PSII-P protein, partial cds, clone: RAFL24-01-M24 Length = 292 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 72 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 13 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 12 tgtaaagctt 3
>emb|BX813852.1|CNS0AEBT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB42ZH11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 948 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 806 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 747 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 746 tgtaaagctt 737
>emb|BX813677.1|CNS0AE2Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB32ZA05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 739 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 544 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 485 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 484 tgtaaagctt 475
>emb|BX815468.1|CNS0ACDF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 922 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 777 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 718 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 717 tgtaaagctt 708
>emb|BX814211.1|CNS0ACB9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB60ZH06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 994 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 804 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 745 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 744 tgtaaagctt 735
>emb|BX814208.1|CNS0ACB8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB60ZH01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 661 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 450 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 391 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 390 tgtaaagctt 381
>emb|BX815307.1|CNS0ABGV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS50ZF04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1014 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 804 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 745 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 744 tgtaaagctt 735
>emb|BX815232.1|CNS0ABDH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS44ZE08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 996 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 806 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 747 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 746 tgtaaagctt 737
>emb|BX814903.1|CNS0AAGT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZA03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 570 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 374 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 315 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 314 tgtaaagctt 305
>emb|BX814881.1|CNS0AAH2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZA07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 709 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 461 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 402 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 401 tgtaaagctt 392
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I, complete sequence Length = 93724 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 4853 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 4912 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 4913 tgtaaagctt 4922
>gb|AY087305.1| Arabidopsis thaliana clone 33922 mRNA, complete sequence Length = 1067 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 825 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 766 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 765 tgtaaagctt 756
>gb|AC011001.2|AC011001 Arabidopsis thaliana chromosome I BAC F4H5 genomic sequence, complete sequence Length = 91608 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 85939 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 85998 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 85999 tgtaaagctt 86008
>emb|X98108.1|ATPSPB A.thaliana psbP gene Length = 1683 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||||| || ||| |||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 1508 tctcgacaaatttcctggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 1449 Query: 243 cgtagagctt 252 ||| ||||| Sbjct: 1448 tgtaaagctt 1439
>emb|Y08886.1|BJ23OESP2 B.juncea mRNA for 23 kD protein of oxygen evolving system of photosystem II Length = 754 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 197 ttggcgcccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct: 611 ttggctcccttgaaccacctcttgtctccagcttgtgctttgcaga 566
>gb|AF545584.1| Xerophyta humilis PsbP mRNA, partial cds Length = 732 Score = 58.0 bits (29), Expect = 3e-05 Identities = 110/137 (80%) Strand = Plus / Minus Query: 203 cccttgaaccacctcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcg 262 ||||| |||||||||||||| || || || ||||||| | ||||||||| || || | Sbjct: 728 cccttaaaccacctcttgtcaccagcctggaccttgcaaatgtagagcttcccatccgac 669 Query: 263 acggtggcggtgatgagctggtgcttccctccctcgtctccgtccgcggtcctggtgagc 322 ||||| |||| ||| | |||||||||||| || || || ||||| || ||||| ||||| Sbjct: 668 acggttgcggcgataatctggtgcttcccaccttcatccccgtcggcagtcctcgtgaga 609 Query: 323 accgttatgctgtagta 339 |||| |||| ||||||| Sbjct: 608 accgatatgttgtagta 592
>ref|NM_128632.2| Arabidopsis thaliana calcium ion binding AT2G30790 mRNA, complete cds Length = 786 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 182 ttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgca 240 ||||| ||||||||| | || || |||||||||||||||||||| ||||| || ||||| Sbjct: 758 ttctcaacgaacttcctagctcctttgaaccacctcttgtctcctgcttgagctttgca 700
>gb|BT015608.1| Arabidopsis thaliana At2g30790 mRNA sequence Length = 581 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 182 ttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgca 240 ||||| ||||||||| | || || |||||||||||||||||||| ||||| || ||||| Sbjct: 553 ttctcaacgaacttcctagctcctttgaaccacctcttgtctcctgcttgagctttgca 495
>emb|X17213.1|SA23KDP2 S.alba psbP gene for 23 kDa polypeptide of the oxygen-evolving complex of photosystem II Length = 1936 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 197 ttggcgcccttgaaccacctcttgtctccggcttgcgccttgcagacgtagagcttgcc 255 ||||| || |||||||||||||||||||| ||||| || ||||||| || |||||||| Sbjct: 1424 ttggctcctttgaaccacctcttgtctccagcttgtgctttgcagatataaagcttgcc 1366
>gb|AC002340.3| Arabidopsis thaliana chromosome 2 BAC T11J7 genomic sequence, complete sequence Length = 79574 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 182 ttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgca 240 ||||| ||||||||| | || || |||||||||||||||||||| ||||| || ||||| Sbjct: 72957 ttctcaacgaacttcctagctcctttgaaccacctcttgtctcctgcttgagctttgca 73015
>gb|BT022094.1| Arabidopsis thaliana At2g30790 mRNA, complete cds Length = 833 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 182 ttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgca 240 ||||| ||||||||| | || || |||||||||||||||||||| ||||| || ||||| Sbjct: 765 ttctcaacgaacttcctagctcctttgaaccacctcttgtctcctgcttgagctttgca 707
>dbj|AK175934.1| Arabidopsis thaliana mRNA for putative photosystem II oxygen-evolving complex 23K protein, complete cds, clone: RAFL22-60-I02 Length = 936 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 182 ttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgca 240 ||||| ||||||||| | || || |||||||||||||||||||| ||||| || ||||| Sbjct: 793 ttctcaacgaacttcctagctcctttgaaccacctcttgtctcctgcttgagctttgca 735
>dbj|AK175821.1| Arabidopsis thaliana mRNA for putative photosystem II oxygen-evolving complex 23K protein, complete cds, clone: RAFL22-42-D16 Length = 936 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 182 ttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgca 240 ||||| ||||||||| | || || |||||||||||||||||||| ||||| || ||||| Sbjct: 793 ttctcaacgaacttcctagctcctttgaaccacctcttgtctcctgcttgagctttgca 735
>dbj|AK175738.1| Arabidopsis thaliana mRNA for putative photosystem II oxygen-evolving complex 23K protein, complete cds, clone: RAFL22-28-H07 Length = 936 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 182 ttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgca 240 ||||| ||||||||| | || || |||||||||||||||||||| ||||| || ||||| Sbjct: 793 ttctcaacgaacttcctagctcctttgaaccacctcttgtctcctgcttgagctttgca 735
>emb|Y07498.1|SAOES23 Sinapis alba mRNA fragment for 23kD subunit of oxygen evolving system of photosystem II Length = 867 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 197 ttggcgcccttgaaccacctcttgtctccggcttgcgccttgcagacgtagagcttgcc 255 ||||| || |||||||||||||||||||| ||||| || ||||||| || |||||||| Sbjct: 705 ttggctcctttgaaccacctcttgtctccagcttgtgctttgcagatataaagcttgcc 647
>dbj|AB236819.1| Trifolium pratense RNA for putative PSII-P protein, partial cds, clone: C214 Length = 915 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 203 cccttgaaccacctcttgtctccggcttgcgccttgcagacgtagagcttgccgtcggcg 262 ||||| ||||||||||||||||| ||||| |||||||| | ||| || ||||| || Sbjct: 739 cccttaaaccacctcttgtctccagcttgagccttgcaaatgtatagtttgccatcattt 680 Query: 263 acggtggcggtgatgagctggtgctt 288 ||||| ||||| || ||||||||||| Sbjct: 679 acggttgcggtaatcagctggtgctt 654
>emb|X78816.1|NPOEC23 N.pseudonarcissus mRNA for OEC 23 Length = 932 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 191 aacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcagacgtagagc 250 ||||||||||| ||||||||||| |||||||| || || || || ||||||| ||| ||| Sbjct: 793 aacttcttggctcccttgaaccatctcttgtcgccagcctgagctttgcagatgtaaagc 734 Query: 251 tt 252 || Sbjct: 733 tt 732
>dbj|AB032245.1| Cucumis sativus psbP mRNA for 23kDa polypeptide of the oxygen-evolving complex of photosystem II, complete cds Length = 1023 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 209 aaccacctcttgtctccggcttgcgccttgca 240 ||||||||||||||||| ||||| |||||||| Sbjct: 751 aaccacctcttgtctcctgcttgtgccttgca 720
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 258 cggcgacggtggcggtgatgagctggtgcttc 289 ||||||||| |||||||| ||||||||||||| Sbjct: 4994412 cggcgacggcggcggtgaggagctggtgcttc 4994443
>emb|X15552.1|PS23KDAP Pea mRNA for 23kDa polypeptide of the oxygen evolving complex of photosystem II Length = 987 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Minus Query: 203 cccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||| |||||||||||||| || ||||| |||||||||| Sbjct: 759 cccttaaaccacctcttgtcaccagcttgagccttgcaga 720
>dbj|D13296.1|PEAPSBP Pisum sativum mRNA for precursor for 23-kDa protein of photosystem II, complete cds Length = 1026 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Minus Query: 203 cccttgaaccacctcttgtctccggcttgcgccttgcaga 242 ||||| |||||||||||||| || ||||| |||||||||| Sbjct: 803 cccttaaaccacctcttgtcaccagcttgagccttgcaga 764
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 232 cgccttgcagacgtagagcttgccgtcggcg 262 |||||||||| ||||| |||||||||||||| Sbjct: 3966281 cgccttgcagtcgtagggcttgccgtcggcg 3966251
>gb|AC010064.7| Drosophila melanogaster 3L BAC RP98-22I16 (Roswell Park Cancer Institute Drosophila BAC library) complete sequence Length = 199396 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 441 actgctggccgaggaggaagcc 462 |||||||||||||||||||||| Sbjct: 39205 actgctggccgaggaggaagcc 39184
>ref|NM_141003.2| Drosophila melanogaster CG3634-RA (CG3634), mRNA Length = 2312 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 441 actgctggccgaggaggaagcc 462 |||||||||||||||||||||| Sbjct: 873 actgctggccgaggaggaagcc 894
>gb|AY071424.1| Drosophila melanogaster RE50559 full length cDNA Length = 2327 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 441 actgctggccgaggaggaagcc 462 |||||||||||||||||||||| Sbjct: 873 actgctggccgaggaggaagcc 894
>emb|X99320.1|STPSBPGEN S.tuberosum mRNA for 23 kDa oxygen evolving protein of photosystem II Length = 1089 Score = 44.1 bits (22), Expect = 0.41 Identities = 88/110 (80%) Strand = Plus / Minus Query: 182 ttctcgacgaacttcttggcgcccttgaaccacctcttgtctccggcttgcgccttgcag 241 ||||| || ||||| ||||| ||||| ||||| |||||||| || ||||| |||||||| Sbjct: 822 ttctccacaaactttttggcacccttaaaccatctcttgtcaccagcttgtgccttgcaa 763 Query: 242 acgtagagcttgccgtcggcgacggtggcggtgatgagctggtgcttccc 291 | ||| || ||||| || || ||||| ||||| | |||||||||||| Sbjct: 762 atgtaaagtttgccatcattcactgtggctgtgatcaactggtgcttccc 713
>gb|AE003592.3| Drosophila melanogaster chromosome 3L, section 73 of 83 of the complete sequence Length = 323816 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 441 actgctggccgaggaggaagcc 462 |||||||||||||||||||||| Sbjct: 179513 actgctggccgaggaggaagcc 179492
>gb|AY486007.1| Thlaspi caerulescens oxygen-evolving system subunit-like mRNA, partial sequence Length = 861 Score = 42.1 bits (21), Expect = 1.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 tggcgcccttgaaccacctcttgtctcc 225 |||| |||||||||| |||||||||||| Sbjct: 749 tggctcccttgaaccncctcttgtctcc 722
>gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, complete sequence Length = 214124 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 tccatcctcatgtacaaatca 65 ||||||||||||||||||||| Sbjct: 136776 tccatcctcatgtacaaatca 136756
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 acgtagagcttgccgtcggcgacg 265 |||||| ||||||||||||||||| Sbjct: 1153026 acgtagggcttgccgtcggcgacg 1153049
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgtagagcttgccgtcggcg 262 |||||||||||||||||||| Sbjct: 88384 cgtagagcttgccgtcggcg 88365
>gb|AC158392.2| Mus musculus BAC clone RP24-87B5 from chromosome 14, complete sequence Length = 187798 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 acaaatcaaagaaacacacatgca 81 |||||| ||||||||||||||||| Sbjct: 74134 acaaatgaaagaaacacacatgca 74157
>ref|XM_672016.1| Plasmodium berghei strain ANKA hypothetical protein (PB000859.01.0) partial mRNA Length = 1608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 attccattaaattcgccgat 140 |||||||||||||||||||| Sbjct: 751 attccattaaattcgccgat 770
>gb|AF333150.1| Dermatocarpon miniatum var. complicatum isolate SH50 16S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; 28S ribosomal RNA gene, partial sequence Length = 555 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gccgtcggcgacggtggcgg 272 |||||||||||||||||||| Sbjct: 371 gccgtcggcgacggtggcgg 390
>emb|X57568.1|SGAMYLASE S.griseus DNA for alpha amylase gene, amy Length = 2271 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 tgccgtcggcgacggtggcggtga 275 ||||| |||||||||||||||||| Sbjct: 1659 tgccggcggcgacggtggcggtga 1636
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 cagacgtagagcttgccgtcggcg 262 |||||||||| ||||||||||||| Sbjct: 1236698 cagacgtagatcttgccgtcggcg 1236721
>emb|AJ505987.1|SGA505987 Streptomyces galbus secD, secF and apt genes Length = 4312 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 cgaacttcttggcgcccttg 208 |||||||||||||||||||| Sbjct: 948 cgaacttcttggcgcccttg 929
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 cgtccaccaccggcgccgag 367 |||||||||||||||||||| Sbjct: 1285623 cgtccaccaccggcgccgag 1285642
>dbj|AK124745.1| Homo sapiens cDNA FLJ42755 fis, clone BRAWH3001475 Length = 3636 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 acaaatcaaagaaacacaca 77 |||||||||||||||||||| Sbjct: 1906 acaaatcaaagaaacacaca 1887
>gb|AC023283.10| Homo sapiens chromosome 10 clone RP11-539I5, complete sequence Length = 218074 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 acaaatcaaagaaacacaca 77 |||||||||||||||||||| Sbjct: 108556 acaaatcaaagaaacacaca 108575
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gccgtcggcgacggtggcgg 272 |||||||||||||||||||| Sbjct: 2933968 gccgtcggcgacggtggcgg 2933987
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 ccgtcggcgacggtggcggtgatg 277 ||||||| |||||||||||||||| Sbjct: 2651022 ccgtcggggacggtggcggtgatg 2651045
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ggtggcggtgatgagctggt 284 |||||||||||||||||||| Sbjct: 3268701 ggtggcggtgatgagctggt 3268682
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tcgacgaacttcttggcgcc 204 |||||||||||||||||||| Sbjct: 2923401 tcgacgaacttcttggcgcc 2923420
>gb|AE004997.1| Halobacterium sp. NRC-1 section 28 of 170 of the complete genome Length = 17112 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cgtcggcgacggtggcggtg 274 |||||||||||||||||||| Sbjct: 5429 cgtcggcgacggtggcggtg 5410
>dbj|AK110218.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-D08, full insert sequence Length = 3457 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cgtcggcgacggtggcggtg 274 |||||||||||||||||||| Sbjct: 2578 cgtcggcgacggtggcggtg 2559
>gb|AC005661.1|AC005661 citb_54_o_2, complete sequence Length = 84633 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 acaaatcaaagaaacacaca 77 |||||||||||||||||||| Sbjct: 25815 acaaatcaaagaaacacaca 25834
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gtcggcgacggtggcggtga 275 |||||||||||||||||||| Sbjct: 1946850 gtcggcgacggtggcggtga 1946869
>emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3, COMPLETE SEQUENCE Length = 211224 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 209 aaccacctcttgtctccggcttgcgccttgca 240 ||||||||||||||||| ||||| || ||||| Sbjct: 39365 aaccacctcttgtctccagcttgagctttgca 39396
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 cgtccaccaccggcgccgag 367 |||||||||||||||||||| Sbjct: 1309400 cgtccaccaccggcgccgag 1309419
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cgtagagcttgccgtcggcg 262 |||||||||||||||||||| Sbjct: 440189 cgtagagcttgccgtcggcg 440208
>gb|M18244.1|STMAMYSL Streptomyces limosus alpha-amylase gene, complete cds Length = 2291 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 tgccgtcggcgacggtggcggtga 275 ||||| |||||||||||||||||| Sbjct: 1652 tgccggcggcgacggtggcggtga 1629 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,500,386 Number of Sequences: 3902068 Number of extensions: 3500386 Number of successful extensions: 76220 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 75071 Number of HSP's gapped (non-prelim): 1144 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)