ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106210.1| Zea mays PCO090267 mRNA sequence 387 e-104
2ref|XM_483740.1| Oryza sativa (japonica cultivar-group), mRNA 347 2e-92
3dbj|AK121536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 2e-92
4dbj|AK121358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 2e-92
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
6dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
7ref|NM_130337.3| Arabidopsis thaliana unknown protein AT2G47690 ... 66 1e-07
8emb|BX821932.1|CNS0A7X6 Arabidopsis thaliana Full-length cDNA Co... 66 1e-07
9gb|AY271664.1| Gossypium barbadense fiber protein Fb14 mRNA, com... 62 2e-06
10gb|DQ023531.1| Gossypium hirsutum cultivar CIM707 Fb14 mRNA, com... 60 7e-06
11ref|NM_116144.2| Arabidopsis thaliana unknown protein AT3G62790 ... 56 1e-04
12gb|AY114576.1| Arabidopsis thaliana putative protein (At3g62790)... 56 1e-04
13gb|AY062842.1| Arabidopsis thaliana putative protein (At3g62790;... 56 1e-04
14gb|AY088460.1| Arabidopsis thaliana clone 6853 mRNA, complete se... 56 1e-04
15emb|BX821178.1|CNS0A86O Arabidopsis thaliana Full-length cDNA Co... 50 0.007
16gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 ma... 44 0.41
17gb|AC010215.7| Drosophila melanogaster clone BACR43O11, complete... 42 1.6
18gb|AC150552.1| Drosophila melanogaster clone BACR12I17, complete... 42 1.6
19gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosom... 42 1.6
20gb|AE003781.5| Drosophila melanogaster chromosome 2L, section 80... 42 1.6
21gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, co... 42 1.6
22emb|AL731676.5| Mouse DNA sequence from clone RP23-460B8 on chro... 42 1.6
23gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 42 1.6
24gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 42 1.6
25gb|BC114275.1| Danio rerio similar to CDNA sequence BC019977, mR... 40 6.4
26emb|AL138880.14| Human DNA sequence from clone RP11-491H9 on chr... 40 6.4
27emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on ch... 40 6.4
28emb|AL845340.11| Mouse DNA sequence from clone RP23-169D3 on chr... 40 6.4
29ref|XM_688457.1| PREDICTED: Danio rerio similar to CDNA sequence... 40 6.4
30dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 6.4
31emb|BX640750.1|HSM806828 Homo sapiens mRNA; cDNA DKFZp686K10126 ... 40 6.4
32gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q2... 40 6.4
33emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 ... 40 6.4
34gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromoso... 40 6.4
35dbj|AP000560.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 6.4
36gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer... 40 6.4
37gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complet... 40 6.4
38gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, c... 40 6.4
39dbj|AB045573.1| Danio rerio DNA, fkk-7a locus, insertion site of... 40 6.4
40dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.4
41dbj|AB082522.1| Homo sapiens mRNA for KIAA1991 protein 40 6.4 
>gb|AY106210.1| Zea mays PCO090267 mRNA sequence
          Length = 586

 Score =  387 bits (195), Expect = e-104
 Identities = 243/259 (93%)
 Strand = Plus / Minus

                                                                       
Query: 213 tggtgagctgcaacagcaggagctccttcggcttcctctttggccttgcgagcagcagct 272
           ||||| |||||||||||||| || || || |||||||| |||||||| ||||||||||||
Sbjct: 378 tggtgtgctgcaacagcaggggcaccctcagcttcctccttggccttacgagcagcagct 319

                                                                       
Query: 273 ctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtgg 332
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctgatctgacgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtgg 259

                                                                       
Query: 333 tggaggcactcgaggtagtcctcgcggaggaggccgcagtcggagggctggcggcagcgg 392
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tggaggcactcgagatagtcctcgcggaggaggccgcagtcggagggctggcggcagcgg 199

                                                                       
Query: 393 ctcatacacgagctgaagtccagccagaagtcgtagcaccgccccttgttcccgttgatg 452
           ||||| |||  |||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 198 ctcatgcactcgctgaactccagccagaagtcgtagcagcggcccttgttcccgttgatg 139

                              
Query: 453 ccccacccggacgccatcg 471
           ||||| |||||||||||||
Sbjct: 138 ccccagccggacgccatcg 120
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>ref|XM_483740.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 545

 Score =  347 bits (175), Expect = 2e-92
 Identities = 199/207 (96%)
 Strand = Plus / Minus

                                                                       
Query: 266 agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaactcctt 325
           ||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 300 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaactcctt 241

                                                                       
Query: 326 ggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggagggctggcg 385
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 240 ggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtgggctggcg 181

                                                                       
Query: 386 gcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgccccttgttccc 445
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgccccttgttccc 121

                                      
Query: 446 gttgatgccccacccggacgccatcgc 472
           |||||||||||||||||||||||||||
Sbjct: 120 gttgatgccccacccggacgccatcgc 94



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 130 gggaattattgccttgctcatagc 153
           ||||||||||||||||||| ||||
Sbjct: 454 gggaattattgccttgctcttagc 431
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>dbj|AK121536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031D23, full
           insert sequence
          Length = 2052

 Score =  347 bits (175), Expect = 2e-92
 Identities = 199/207 (96%)
 Strand = Plus / Minus

                                                                       
Query: 266 agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaactcctt 325
           ||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 294 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaactcctt 235

                                                                       
Query: 326 ggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggagggctggcg 385
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 234 ggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtgggctggcg 175

                                                                       
Query: 386 gcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgccccttgttccc 445
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgccccttgttccc 115

                                      
Query: 446 gttgatgccccacccggacgccatcgc 472
           |||||||||||||||||||||||||||
Sbjct: 114 gttgatgccccacccggacgccatcgc 88
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>dbj|AK121358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123D21, full
           insert sequence
          Length = 545

 Score =  347 bits (175), Expect = 2e-92
 Identities = 199/207 (96%)
 Strand = Plus / Minus

                                                                       
Query: 266 agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaactcctt 325
           ||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 300 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaactcctt 241

                                                                       
Query: 326 ggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggagggctggcg 385
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 240 ggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtgggctggcg 181

                                                                       
Query: 386 gcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgccccttgttccc 445
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgccccttgttccc 121

                                      
Query: 446 gttgatgccccacccggacgccatcgc 472
           |||||||||||||||||||||||||||
Sbjct: 120 gttgatgccccacccggacgccatcgc 94



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 130 gggaattattgccttgctcatagc 153
           ||||||||||||||||||| ||||
Sbjct: 454 gggaattattgccttgctcttagc 431
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  272 bits (137), Expect = 1e-69
 Identities = 149/153 (97%)
 Strand = Plus / Minus

                                                                            
Query: 320      ctccttggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggaggg 379
                |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 27849840 ctccttggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtggg 27849781

                                                                            
Query: 380      ctggcggcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgcccctt 439
                ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 27849780 ctggcggcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgcccctt 27849721

                                                 
Query: 440      gttcccgttgatgccccacccggacgccatcgc 472
                |||||||||||||||||||||||||||||||||
Sbjct: 27849720 gttcccgttgatgccccacccggacgccatcgc 27849688



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 266      agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaact 321
                ||||||||| | || ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 27850904 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaact 27850849



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 130      gggaattattgccttgctcatagc 153
                ||||||||||||||||||| ||||
Sbjct: 27851058 gggaattattgccttgctcttagc 27851035
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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score =  272 bits (137), Expect = 1e-69
 Identities = 149/153 (97%)
 Strand = Plus / Minus

                                                                         
Query: 320   ctccttggagtggtggaggcactcgaggtagtcctcgcggaggaggccgcagtcggaggg 379
             |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 57918 ctccttggagtggtggaggcactcgaggtagtcctcccggaggaggccgcagtcggtggg 57859

                                                                         
Query: 380   ctggcggcagcggctcatacacgagctgaagtccagccagaagtcgtagcaccgcccctt 439
             ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 57858 ctggcggcagcggctcatacactcgctgaagtccagccagaagtcgtagcaccgcccctt 57799

                                              
Query: 440   gttcccgttgatgccccacccggacgccatcgc 472
             |||||||||||||||||||||||||||||||||
Sbjct: 57798 gttcccgttgatgccccacccggacgccatcgc 57766



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 266   agcagctctaatctgacgttgctcctccttgtagatcctgttcctgcgctggaact 321
             ||||||||| | || ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 58982 agcagctcttaacttacgttgctcctccttgtagattctgttcctgcgctggaact 58927



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   gggaattattgccttgctcatagc 153
             ||||||||||||||||||| ||||
Sbjct: 59136 gggaattattgccttgctcttagc 59113
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>ref|NM_130337.3| Arabidopsis thaliana unknown protein AT2G47690 mRNA, complete cds
          Length = 589

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 285 tgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggcactcg 344
           |||||||||||||| ||||||||||| |  || ||||| ||||| |||||||| ||||||
Sbjct: 290 tgctcctccttgtatatcctgttccttctttgaaactctttggaatggtggagacactcg 231

                
Query: 345 aggta 349
           |||||
Sbjct: 230 aggta 226
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>emb|BX821932.1|CNS0A7X6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL86ZA01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 506

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 285 tgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggcactcg 344
           |||||||||||||| ||||||||||| |  || ||||| ||||| |||||||| ||||||
Sbjct: 170 tgctcctccttgtatatcctgttccttctttgaaactctttggaatggtggagacactcg 111

                
Query: 345 aggta 349
           |||||
Sbjct: 110 aggta 106
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>gb|AY271664.1| Gossypium barbadense fiber protein Fb14 mRNA, complete cds
          Length = 568

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 404 gctgaagtccagccagaagtcgtagcaccgccccttgttcccgttgatgccccacccgga 463
           ||||||||| | |||||| ||||||||||  || ||||| |||||||| |||||||||||
Sbjct: 111 gctgaagtcgacccagaaatcgtagcacctgcctttgttaccgttgattccccacccgga 52

                  
Query: 464 cgccatc 470
            ||||||
Sbjct: 51  tgccatc 45
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>gb|DQ023531.1| Gossypium hirsutum cultivar CIM707 Fb14 mRNA, complete cds
          Length = 252

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                       
Query: 404 gctgaagtccagccagaagtcgtagcaccgccccttgttcccgttgatgccccacccgga 463
           ||||||||| | |||||| ||||||||||  || ||||| |||||||| |||||||||||
Sbjct: 66  gctgaagtcgacccagaaatcgtagcacctgcctttgttaccgttgattccccacccgga 7

                 
Query: 464 cgccat 469
            |||||
Sbjct: 6   tgccat 1
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>ref|NM_116144.2| Arabidopsis thaliana unknown protein AT3G62790 mRNA, complete cds
          Length = 576

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 281 acgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggca 340
           |||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || ||
Sbjct: 276 acgttgttcttctttgtatatcctgtttcttcgttggaactctttggaatggtgaagaca 217

                       
Query: 341 ctcgaggtagtc 352
           ||||||||||||
Sbjct: 216 ctcgaggtagtc 205
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>gb|AY114576.1| Arabidopsis thaliana putative protein (At3g62790) mRNA, complete
           cds
          Length = 437

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 281 acgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggca 340
           |||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || ||
Sbjct: 189 acgttgttcttctttgtatatcctgtttcttcgttggaactctttggaatggtgaagaca 130

                       
Query: 341 ctcgaggtagtc 352
           ||||||||||||
Sbjct: 129 ctcgaggtagtc 118
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>gb|AY062842.1| Arabidopsis thaliana putative protein (At3g62790; F26K9_220) mRNA,
           complete cds
          Length = 576

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 281 acgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggca 340
           |||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || ||
Sbjct: 276 acgttgttcttctttgtatatcctgtttcttcgttggaactctttggaatggtgaagaca 217

                       
Query: 341 ctcgaggtagtc 352
           ||||||||||||
Sbjct: 216 ctcgaggtagtc 205
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>gb|AY088460.1| Arabidopsis thaliana clone 6853 mRNA, complete sequence
          Length = 562

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 281 acgttgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggca 340
           |||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || ||
Sbjct: 271 acgttgttcttctttgtatatcctgtttcttcgttggaactctttggaatggtgaagaca 212

                       
Query: 341 ctcgaggtagtc 352
           ||||||||||||
Sbjct: 211 ctcgaggtagtc 200
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>emb|BX821178.1|CNS0A86O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL22ZC05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 583

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 285 tgctcctccttgtagatcctgttcctgcgctggaactccttggagtggtggaggcactcg 344
           |||||||||||||| || |||||||| |  || ||||| || || |||||||| ||||||
Sbjct: 199 tgctcctccttgtatatactgttccttctttgaaactctttagaatggtggagacactcg 140

                
Query: 345 aggta 349
           |||||
Sbjct: 139 aggta 135
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>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete
             sequence
          Length = 106355

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 285   tgctcctccttgtagatcctgttcct 310
             |||||||||||||| |||||||||||
Sbjct: 19421 tgctcctccttgtatatcctgttcct 19396
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>gb|AC010215.7| Drosophila melanogaster clone BACR43O11, complete sequence
          Length = 171888

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 182   aagcataagaaaaatcaaaaa 202
             |||||||||||||||||||||
Sbjct: 87034 aagcataagaaaaatcaaaaa 87054
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>gb|AC150552.1| Drosophila melanogaster clone BACR12I17, complete sequence
          Length = 174573

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 182  aagcataagaaaaatcaaaaa 202
            |||||||||||||||||||||
Sbjct: 6630 aagcataagaaaaatcaaaaa 6610
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>gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosome 17, complete
             sequence
          Length = 181002

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    tgcacaaacttcatgaccagg 69
             |||||||||||||||||||||
Sbjct: 78633 tgcacaaacttcatgaccagg 78613
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>gb|AE003781.5| Drosophila melanogaster chromosome 2L, section 80 of 83 of the complete
             sequence
          Length = 323775

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   aagcataagaaaaatcaaaaa 202
             |||||||||||||||||||||
Sbjct: 27570 aagcataagaaaaatcaaaaa 27550
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>gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, complete sequence
          Length = 180605

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     tgcacaaacttcatgaccagg 69
              |||||||||||||||||||||
Sbjct: 131266 tgcacaaacttcatgaccagg 131246
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>emb|AL731676.5| Mouse DNA sequence from clone RP23-460B8 on chromosome X, complete
             sequence
          Length = 180106

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 289   cctccttgtagatcctgttcc 309
             |||||||||||||||||||||
Sbjct: 54473 cctccttgtagatcctgttcc 54453
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>gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
            clone KBrH015H17, complete sequence
          Length = 110885

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 324  ttggagtggtggaggcactcgaggtagtc 352
            ||||| |||||||| ||||||||||||||
Sbjct: 4492 ttggaatggtggagacactcgaggtagtc 4520
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>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH001H24, complete sequence
          Length = 118144

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 324   ttggagtggtggaggcactcgaggtagtc 352
             ||||| |||||||| ||||||||||||||
Sbjct: 90643 ttggaatggtggagacactcgaggtagtc 90671
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>gb|BC114275.1| Danio rerio similar to CDNA sequence BC019977, mRNA (cDNA clone
           IMAGE:7055214), partial cds
          Length = 1226

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 tcggcttcctctttggcctt 259
           ||||||||||||||||||||
Sbjct: 252 tcggcttcctctttggcctt 233
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>emb|AL138880.14| Human DNA sequence from clone RP11-491H9 on chromosome 6 Contains part of
              the SUPT3H gene for suppressor of Ty 3 homolog (S.
              cerevisiae), a novel pseudogene and a pseudogene similar to
              part of poly(rC) binding protein 3 (PCBP3), complete
              sequence
          Length = 165454

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     tttaccaaactcatgatttt 93
              ||||||||||||||||||||
Sbjct: 134610 tttaccaaactcatgatttt 134591
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>emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on chromosome 13 Contains the
              3' end of the gene similar to G protein coupled receptor
              affecting testicular descent (H. sapiens)(GREAT)and a CpG
              island, complete sequence
          Length = 170522

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    aacaaaagcataagaaaaat 196
              ||||||||||||||||||||
Sbjct: 161997 aacaaaagcataagaaaaat 162016
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>emb|AL845340.11| Mouse DNA sequence from clone RP23-169D3 on chromosome 4 Contains a
             novel gene and a CpG island, complete sequence
          Length = 193243

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   aaaagcataagaaaaatcaa 199
             ||||||||||||||||||||
Sbjct: 14770 aaaagcataagaaaaatcaa 14751
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>ref|XM_688457.1| PREDICTED: Danio rerio similar to CDNA sequence BC019977 (LOC565172),
            mRNA
          Length = 2781

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  tcggcttcctctttggcctt 259
            ||||||||||||||||||||
Sbjct: 1826 tcggcttcctctttggcctt 1807
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 16     gattgaataagcgtttattatcgc 39
              ||||| ||||||||||||||||||
Sbjct: 203982 gattggataagcgtttattatcgc 203959
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>emb|BX640750.1|HSM806828 Homo sapiens mRNA; cDNA DKFZp686K10126 (from clone DKFZp686K10126)
          Length = 6744

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   tttaccaaactcatgatttt 93
            ||||||||||||||||||||
Sbjct: 2971 tttaccaaactcatgatttt 2990
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>gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q22, complete sequence
          Length = 128978

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   acttgcagcaaacaaaagca 186
             ||||||||||||||||||||
Sbjct: 52682 acttgcagcaaacaaaagca 52663
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>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16,
              complete sequence
          Length = 196875

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    tcggcttcctctttggcctt 259
              ||||||||||||||||||||
Sbjct: 100003 tcggcttcctctttggcctt 100022
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>gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromosome ul, complete sequence
          Length = 179537

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    aaacaaaagcataagaaaaa 195
              ||||||||||||||||||||
Sbjct: 168050 aaacaaaagcataagaaaaa 168031
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>dbj|AP000560.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-8M21, complete
             sequence
          Length = 118300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    tttaccaaactcatgatttt 93
             ||||||||||||||||||||
Sbjct: 90188 tttaccaaactcatgatttt 90207
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>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208921

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 391    ggctcatacacgagctgaagtcca 414
              |||||||||| |||||||||||||
Sbjct: 112729 ggctcatacatgagctgaagtcca 112752
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>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence
          Length = 207908

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 391    ggctcatacacgagctgaagtcca 414
              |||||||||| |||||||||||||
Sbjct: 192939 ggctcatacatgagctgaagtcca 192962
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>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence
          Length = 140942

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   aacaaaagcataagaaaaat 196
             ||||||||||||||||||||
Sbjct: 45466 aacaaaagcataagaaaaat 45485
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>dbj|AB045573.1| Danio rerio DNA, fkk-7a locus, insertion site of the medaka fish
           Tol2 element
          Length = 703

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 240 tcggcttcctctttggcctt 259
           ||||||||||||||||||||
Sbjct: 651 tcggcttcctctttggcctt 670
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>dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-864N7, complete
              sequences
          Length = 230157

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tttaccaaactcatgatttt 93
              ||||||||||||||||||||
Sbjct: 217454 tttaccaaactcatgatttt 217473
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>dbj|AB082522.1| Homo sapiens mRNA for KIAA1991 protein
          Length = 7811

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   tttaccaaactcatgatttt 93
            ||||||||||||||||||||
Sbjct: 4067 tttaccaaactcatgatttt 4086


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,443,873
Number of Sequences: 3902068
Number of extensions: 4443873
Number of successful extensions: 92620
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92505
Number of HSP's gapped (non-prelim): 113
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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