ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 131 3e-27
2gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome... 131 3e-27
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
4dbj|AK103846.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
5dbj|AK061960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
6dbj|AK058847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
7gb|BT012851.1| Lycopersicon esculentum clone 113930R, mRNA sequence 72 2e-09
8gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
9gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
11dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
12gb|BT016696.1| Zea mays clone Contig529 mRNA sequence 64 5e-07
13gb|BT017551.1| Zea mays clone EL01N0424D04.c mRNA sequence 64 5e-07
14gb|BT017416.1| Zea mays clone EL01N0401B11.c mRNA sequence 64 5e-07
15gb|U84972.1|NTU84972 Nicotiana tabacum GUT15 mRNA, complete cds 58 3e-05
16gb|U75694.1|STU75694 Solanum tuberosum SRE1b (sre1b) mRNA, compl... 50 0.008
17gb|U75693.1|STU75693 Solanum tuberosum SRE1a (sre1a) mRNA, compl... 50 0.008
18gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, c... 44 0.47
19gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, co... 44 0.47
20ref|NM_114656.2| Arabidopsis thaliana binding AT3G47860 mRNA, co... 42 1.9
21ref|NM_127400.2| Arabidopsis thaliana GUT15 (GENE WITH UNSTABLE ... 42 1.9
22emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on ch... 42 1.9
23emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chr... 42 1.9
24emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BA... 42 1.9
25gb|AC006439.4| Arabidopsis thaliana chromosome 2 clone T30D6 map... 42 1.9
26dbj|AK220588.1| Arabidopsis thaliana mRNA for hypothetical prote... 42 1.9
27gb|AY044334.1| Arabidopsis thaliana putative protein (T23J7.190)... 42 1.9
28emb|BX819089.1|CNS0A9QC Arabidopsis thaliana Full-length cDNA Co... 42 1.9
29emb|BX819088.1|CNS0A9PU Arabidopsis thaliana Full-length cDNA Co... 42 1.9
30emb|BX842045.1|CNS09YAE Arabidopsis thaliana Full-length cDNA Co... 42 1.9
31dbj|AK176672.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
32dbj|AK176632.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
33dbj|AK176884.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
34dbj|AK176857.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
35dbj|AK176840.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
36dbj|AK176476.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
37dbj|AK176315.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
38dbj|AK176067.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
39dbj|AK175993.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
40dbj|AK175682.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
41dbj|AK175669.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
42dbj|AK175384.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 42 1.9
43gb|AC153891.6| Mus musculus 10 BAC RP23-415J15 (Roswell Park Can... 42 1.9
44gb|U84973.1|ATU84973 Arabidopsis thaliana GUT15 mRNA, complete cds 42 1.9
45gb|U75695.1|STU75695 Solanum tuberosum SRE1c (sre1c) mRNA, compl... 42 1.9
46gb|AC168272.8| Mus musculus 10 BAC RP24-261C21 (Roswell Park Can... 42 1.9
47gb|AC121784.2| Mus musculus BAC clone RP23-378G4 from 12, comple... 40 7.3
48ref|XM_738248.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 7.3
49gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, comp... 40 7.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/119 (90%), Gaps = 6/119 (5%)
 Strand = Plus / Minus

                                                                           
Query: 424     ggggggagaacccggggctaaaacaagataacccccgtgcgatctccccccgagacacaa 483
               |||||||||||||||||||||| ||| ||||||||||||||| ||||||||  |||||||
Sbjct: 6723408 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 6723350

                                                                          
Query: 484     aaac--catctttattacggtggtggcctgccatgcgagcgcacccaacatggcaaagg 540
               |||   |||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 6723349 aaagatcatctttattacggtgg---cctgccatgcgagcgcacccaacatggcaaagg 6723294
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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
              complete sequence
          Length = 127946

 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/119 (90%), Gaps = 6/119 (5%)
 Strand = Plus / Minus

                                                                          
Query: 424    ggggggagaacccggggctaaaacaagataacccccgtgcgatctccccccgagacacaa 483
              |||||||||||||||||||||| ||| ||||||||||||||| ||||||||  |||||||
Sbjct: 108956 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 108898

                                                                         
Query: 484    aaac--catctttattacggtggtggcctgccatgcgagcgcacccaacatggcaaagg 540
              |||   |||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 108897 aaagatcatctttattacggtgg---cctgccatgcgagcgcacccaacatggcaaagg 108842
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/119 (90%), Gaps = 6/119 (5%)
 Strand = Plus / Minus

                                                                           
Query: 424     ggggggagaacccggggctaaaacaagataacccccgtgcgatctccccccgagacacaa 483
               |||||||||||||||||||||| ||| ||||||||||||||| ||||||||  |||||||
Sbjct: 6722621 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 6722563

                                                                          
Query: 484     aaac--catctttattacggtggtggcctgccatgcgagcgcacccaacatggcaaagg 540
               |||   |||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 6722562 aaagatcatctttattacggtgg---cctgccatgcgagcgcacccaacatggcaaagg 6722507
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>dbj|AK103846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148J22, full
           insert sequence
          Length = 2465

 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/119 (90%), Gaps = 6/119 (5%)
 Strand = Plus / Minus

                                                                       
Query: 424 ggggggagaacccggggctaaaacaagataacccccgtgcgatctccccccgagacacaa 483
           |||||||||||||||||||||| ||| ||||||||||||||| ||||||||  |||||||
Sbjct: 732 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 674

                                                                      
Query: 484 aaac--catctttattacggtggtggcctgccatgcgagcgcacccaacatggcaaagg 540
           |||   |||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 673 aaagatcatctttattacggtgg---cctgccatgcgagcgcacccaacatggcaaagg 618
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>dbj|AK061960.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G02, full
           insert sequence
          Length = 1385

 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/119 (90%), Gaps = 6/119 (5%)
 Strand = Plus / Minus

                                                                       
Query: 424 ggggggagaacccggggctaaaacaagataacccccgtgcgatctccccccgagacacaa 483
           |||||||||||||||||||||| ||| ||||||||||||||| ||||||||  |||||||
Sbjct: 735 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 677

                                                                      
Query: 484 aaac--catctttattacggtggtggcctgccatgcgagcgcacccaacatggcaaagg 540
           |||   |||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 676 aaagatcatctttattacggtgg---cctgccatgcgagcgcacccaacatggcaaagg 621
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>dbj|AK058847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-G07, full
           insert sequence
          Length = 695

 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/119 (90%), Gaps = 6/119 (5%)
 Strand = Plus / Minus

                                                                       
Query: 424 ggggggagaacccggggctaaaacaagataacccccgtgcgatctccccccgagacacaa 483
           |||||||||||||||||||||| ||| ||||||||||||||| ||||||||  |||||||
Sbjct: 141 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 83

                                                                      
Query: 484 aaac--catctttattacggtggtggcctgccatgcgagcgcacccaacatggcaaagg 540
           |||   |||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 82  aaagatcatctttattacggtgg---cctgccatgcgagcgcacccaacatggcaaagg 27
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>gb|BT012851.1| Lycopersicon esculentum clone 113930R, mRNA sequence
          Length = 2584

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                               
Query: 505 tggcctgccatgcgagcgcacccaacatggcaaagg 540
           ||||||||||||||||||||||||||||||||||||
Sbjct: 698 tggcctgccatgcgagcgcacccaacatggcaaagg 663
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>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
             complete sequence
          Length = 164501

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                  
Query: 504   gtggcctgccatgcgagcgcacccaacatggcaaagg 540
             ||||||||||| |||||||||||||||||||||||||
Sbjct: 33515 gtggcctgccaagcgagcgcacccaacatggcaaagg 33479
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>gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19,
             complete sequence
          Length = 158749

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                  
Query: 504   gtggcctgccatgcgagcgcacccaacatggcaaagg 540
             ||||||||||| |||||||||||||||||||||||||
Sbjct: 29728 gtggcctgccaagcgagcgcacccaacatggcaaagg 29764
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                     
Query: 504      gtggcctgccatgcgagcgcacccaacatggcaaagg 540
                ||||||||||| |||||||||||||||||||||||||
Sbjct: 12364103 gtggcctgccaagcgagcgcacccaacatggcaaagg 12364067
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>dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0045D08
          Length = 160541

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                   
Query: 504    gtggcctgccatgcgagcgcacccaacatggcaaagg 540
              ||||||||||| |||||||||||||||||||||||||
Sbjct: 122752 gtggcctgccaagcgagcgcacccaacatggcaaagg 122716
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>gb|BT016696.1| Zea mays clone Contig529 mRNA sequence
          Length = 707

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 505 tggcctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||||||||||||||||| |||||||||||
Sbjct: 634 tggcctgccatgcgagcgcacccatcatggcaaagg 599
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>gb|BT017551.1| Zea mays clone EL01N0424D04.c mRNA sequence
          Length = 1171

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 505 tggcctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||||||||||||||||| |||||||||||
Sbjct: 566 tggcctgccatgcgagcgcacccatcatggcaaagg 531
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>gb|BT017416.1| Zea mays clone EL01N0401B11.c mRNA sequence
          Length = 1133

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 505 tggcctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||||||||||||||||| |||||||||||
Sbjct: 565 tggcctgccatgcgagcgcacccatcatggcaaagg 530
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>gb|U84972.1|NTU84972 Nicotiana tabacum GUT15 mRNA, complete cds
          Length = 1670

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           ||||||||||||||||||||| |||||||||||
Sbjct: 630 cctgccatgcgagcgcacccatcatggcaaagg 598
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>gb|U75694.1|STU75694 Solanum tuberosum SRE1b (sre1b) mRNA, complete cds
          Length = 2467

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           ||||||||||||||||||||  |||||||||||
Sbjct: 719 cctgccatgcgagcgcacccggcatggcaaagg 687
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>gb|U75693.1|STU75693 Solanum tuberosum SRE1a (sre1a) mRNA, complete cds
          Length = 2060

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           ||||||||||||||||||||  |||||||||||
Sbjct: 731 cctgccatgcgagcgcacccgtcatggcaaagg 699
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>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence
          Length = 76158

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 174   gaaagcattcaccaaacttccagaat 199
             ||||||||| ||||||||||||||||
Sbjct: 22245 gaaagcatttaccaaacttccagaat 22220
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>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence
          Length = 171307

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 174    gaaagcattcaccaaacttccagaat 199
              ||||||||| ||||||||||||||||
Sbjct: 149048 gaaagcatttaccaaacttccagaat 149023
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>ref|NM_114656.2| Arabidopsis thaliana binding AT3G47860 mRNA, complete cds
          Length = 1162

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 190  cttccagaatcaaaacactct 210
            |||||||||||||||||||||
Sbjct: 1141 cttccagaatcaaaacactct 1161
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>ref|NM_127400.2| Arabidopsis thaliana GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15)
           AT2G18440 (GUT15) mRNA, complete cds
          Length = 1190

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 297 cctgccatgcaagcgcacctgacatggcaaagg 265
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>emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on chromosome 9 Contains
            the 5' end of the MAPKAP1 gene for mitogen-activated
            protein kinase associated protein 1, a novel gene, the 5'
            end of the PBX3 gene for pre-B-cell leukemia
            transcription factor 3 and three CpG islands, complete
            sequence
          Length = 109081

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 98   aacaacttcacaaatgatttg 118
            |||||||||||||||||||||
Sbjct: 2621 aacaacttcacaaatgatttg 2601
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>emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chromosome 9 Contains a
             pseudogene similar to part of a zinc finger protein, two
             novel pseudogenes, a novel gene similar to DKFZP434I1117,
             a novel pseudogene (FLJ23476), two novel gene, a novel
             gene similar to MGC12954 and four CpG islands, complete
             sequence
          Length = 186108

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   gaggcttcatttgggtactaa 290
             |||||||||||||||||||||
Sbjct: 10135 gaggcttcatttgggtactaa 10115
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>emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7
          Length = 92493

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 190   cttccagaatcaaaacactct 210
             |||||||||||||||||||||
Sbjct: 80883 cttccagaatcaaaacactct 80863
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>gb|AC006439.4| Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete
             sequence
          Length = 92861

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 508   cctgccatgcgagcgcacccaacatggcaaagg 540
             |||||||||| ||||||||  ||||||||||||
Sbjct: 18843 cctgccatgcaagcgcacctgacatggcaaagg 18811
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>dbj|AK220588.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL17-28-H23
          Length = 983

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>gb|AY044334.1| Arabidopsis thaliana putative protein (T23J7.190) mRNA, complete cds
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 190  cttccagaatcaaaacactct 210
            |||||||||||||||||||||
Sbjct: 1122 cttccagaatcaaaacactct 1142
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>emb|BX819089.1|CNS0A9QC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB44ZG08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1314

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 469 cctgccatgcaagcgcacctgacatggcaaagg 437
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>emb|BX819088.1|CNS0A9PU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB44ZF08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1307

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 469 cctgccatgcaagcgcacctgacatggcaaagg 437
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>emb|BX842045.1|CNS09YAE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH69ZH05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1180

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 462 cctgccatgcaagcgcacctgacatggcaaagg 430
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>dbj|AK176672.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-20-O10
          Length = 1382

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK176632.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-17-A12
          Length = 1001

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK176884.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-44-H16
          Length = 1372

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK176857.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-41-F13
          Length = 731

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK176840.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-40-B17
          Length = 734

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK176476.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-27-I20
          Length = 986

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK176315.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-27-P21
          Length = 1000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK176067.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-80-M09
          Length = 1373

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK175993.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-69-A04
          Length = 1373

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK175682.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-19-L10
          Length = 1373

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK175669.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-16-F01
          Length = 1373

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>dbj|AK175384.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-82-G23
          Length = 1372

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 479 cctgccatgcaagcgcacctgacatggcaaagg 447
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>gb|AC153891.6| Mus musculus 10 BAC RP23-415J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 198332

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 38     aaattatgattaacaacagagacaa 62
              ||||||||||| |||||||||||||
Sbjct: 107266 aaattatgattcacaacagagacaa 107290
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>gb|U84973.1|ATU84973 Arabidopsis thaliana GUT15 mRNA, complete cds
          Length = 1377

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           |||||||||| ||||||||  ||||||||||||
Sbjct: 463 cctgccatgcaagcgcacctgacatggcaaagg 431
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>gb|U75695.1|STU75695 Solanum tuberosum SRE1c (sre1c) mRNA, complete cds
          Length = 2395

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 508 cctgccatgcgagcgcacccaacatggcaaagg 540
           ||||||||||||||||||||  |||| ||||||
Sbjct: 745 cctgccatgcgagcgcacccggcatgacaaagg 713
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>gb|AC168272.8| Mus musculus 10 BAC RP24-261C21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 189395

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 38    aaattatgattaacaacagagacaa 62
             ||||||||||| |||||||||||||
Sbjct: 46084 aaattatgattcacaacagagacaa 46060
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>gb|AC121784.2| Mus musculus BAC clone RP23-378G4 from 12, complete sequence
          Length = 163125

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 170    tttggaaagcattcaccaaacttccaga 197
              ||||||||||||||| | ||||||||||
Sbjct: 101409 tttggaaagcattcagccaacttccaga 101436
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>ref|XM_738248.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000956.01.0)
            partial mRNA
          Length = 1935

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   aaattatgattaacaacaga 57
            ||||||||||||||||||||
Sbjct: 1367 aaattatgattaacaacaga 1386
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>gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, complete sequence
          Length = 154939

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 92     tgacacaacaacttcacaaatgatttgc 119
              |||||| |||||| ||||||||||||||
Sbjct: 124123 tgacactacaactccacaaatgatttgc 124096


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,215,626
Number of Sequences: 3902068
Number of extensions: 5215626
Number of successful extensions: 92322
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92113
Number of HSP's gapped (non-prelim): 191
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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