ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7i18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLA2R_RABIT (P49260) 180 kDa secretory phospholipase A2 receptor... 34 0.42
2RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote... 33 0.54
3RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro... 33 0.93
4HLES_DROME (Q02308) Protein hairless 32 1.6
5RIG_DROME (Q86BY9) Protein rigor mortis 32 1.6
6AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-al... 32 2.1
7AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Pro... 30 6.0
8LGT_RHOPA (P60973) Prolipoprotein diacylglyceryl transferase (EC... 30 7.9

>PLA2R_RABIT (P49260) 180 kDa secretory phospholipase A2 receptor precursor|
            (PLA2-R)
          Length = 1458

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 448  KW--GNPPPLENGSTSNLSTPPNGASSSDQPER**REV*SVRPFYHFDSSWWYESLTKMG 275
            KW  GNP    N S S++   P+  +++DQ       + S  P +HF   W++E   K G
Sbjct: 1030 KWLNGNPVAYSNWSPSDIINIPSYNTTADQKPIPLCALLSSNPNFHFTGKWYFEDCGKEG 1089

Query: 274  F 272
            +
Sbjct: 1090 Y 1090



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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -2

Query: 604  QCRILPASYL-PPNIS-SNVHPVVVAAHPSEANQFALGLTDGSVYVMEPLESERKWGNPP 431
            Q + LP+S   PP ++ S   P   A+HP+      +     S +   P       G PP
Sbjct: 984  QSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGGLHQV--PSQSPFPQHPFVP----GGPP 1037

Query: 430  PLENGSTSNLSTPPNGASSSDQP 362
            P+   S    STPP G SSS QP
Sbjct: 1038 PITPPSCPPTSTPPAGPSSSSQP 1060



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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -2

Query: 442  GNPPPLENGSTSNLSTPPNGASSSDQP 362
            G PPP+   S    STPP G SSS QP
Sbjct: 1034 GGPPPITPPSCPPTSTPPAGPSSSSQP 1060



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>HLES_DROME (Q02308) Protein hairless|
          Length = 1077

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -2

Query: 589  PASYLPPNIS---SNVHPVVVAAHPSEANQFALGLTDGSVYVMEPLESERKWGNPPPLEN 419
            P+ +  P+++    + HP  +  H S A+     LTD S   M    S R     P   +
Sbjct: 980  PSPHTHPHLAHPHQHPHPAALTTHHSPAHLATPKLTDSSTDQMSATSSHRTASTSPSSSS 1039

Query: 418  GSTSNLSTPPNGASSS 371
             S S+ S   +GASSS
Sbjct: 1040 ASASS-SAATSGASSS 1054



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>RIG_DROME (Q86BY9) Protein rigor mortis|
          Length = 1235

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 538 VAAHPSEANQFALGLTDGSVYVMEPLESERKW 443
           +A  P ++N+FA+   D SVYVME   +ER W
Sbjct: 747 IAWCPLDSNKFAVSGNDRSVYVMEFQPTERNW 778



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>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 538 VAAHPSEANQFALGLTDGSVYVMEPLESERKWGNPPPLENGSTSNLSTPPNGASSS 371
           + +  S  + F LG+ +G   V++P   + +W   PP  + ++ +L  P   AS +
Sbjct: 30  LGSRASPVSGFQLGVVEGEWRVVQPAYGQARWTTSPPPASPTSGSLRRPTLSASKA 85



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>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4) (FEL protein)
          Length = 1210

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
 Frame = -2

Query: 589 PASYLPPNISSNVHPVVVAAHPSEANQFALGLTDGS-----------VYVMEPLESERKW 443
           P+S  PP+   ++   V +AH S A   +   +D S               EPLE+    
Sbjct: 445 PSSSAPPSAPQSLPEPVASAHSSSAESESTSDSDSSSDSESESSSSDSEENEPLETPAPE 504

Query: 442 GNPP-----PLENGST--SNLSTPPNGASSSDQPER 356
             PP      L+N  T  S  + PP G  S++ P R
Sbjct: 505 PEPPTTNKWQLDNWLTKVSQPAAPPEGPRSTEPPRR 540



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>LGT_RHOPA (P60973) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 286

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 547 PVVVAAHPSEANQFAL----GLTDGSVYVMEPLESERKWGNPPPL 425
           PV VA  P     +AL    G+  G +Y    L+ +R WG P P+
Sbjct: 13  PVAVAIGPFAIRWYALAYIAGIVIGWLYARMLLQRQRLWGGPSPI 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,760,372
Number of Sequences: 219361
Number of extensions: 1859506
Number of successful extensions: 4964
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4959
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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