| Clone Name | rbaal25b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184953.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1893 Score = 268 bits (135), Expect = 2e-68 Identities = 276/323 (85%) Strand = Plus / Minus Query: 266 gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325 ||||||||||||||||| || || ||||||||||| || ||| || ||||||||||||| Sbjct: 1574 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 1515 Query: 326 ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385 |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || Sbjct: 1514 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 1455 Query: 386 atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445 || | || | ||| || || |||||||||||||| ||| ||||||| || |||||| Sbjct: 1454 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 1395 Query: 446 acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505 ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 1394 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 1335 Query: 506 aggcccaccttgtcatttgaacacagctcaagtttcacaccctcagataccctgcgctca 565 ||||| ||||||||||||| || |||||||| |||||||||||||| ||||| || ||| Sbjct: 1334 aggccgaccttgtcatttgtgcagagctcaagcttcacaccctcagacaccctccgttca 1275 Query: 566 attgcaccttcaaggcactggat 588 || ||| |||||||||||||||| Sbjct: 1274 atagcagcttcaaggcactggat 1252
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 228 bits (115), Expect = 2e-56 Identities = 241/283 (85%) Strand = Plus / Minus Query: 266 gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325 ||||||||||||||||| || || ||||||||||| || ||| || ||||||||||||| Sbjct: 22092167 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 22092108 Query: 326 ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385 |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || Sbjct: 22092107 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 22092048 Query: 386 atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445 || | || | ||| || || |||||||||||||| ||| ||||||| || |||||| Sbjct: 22092047 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 22091988 Query: 446 acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505 ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 22091987 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 22091928 Query: 506 aggcccaccttgtcatttgaacacagctcaagtttcacaccct 548 ||||| ||||||||||||| || |||||||| |||||||||| Sbjct: 22091927 aggccgaccttgtcatttgtgcagagctcaagcttcacaccct 22091885 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Minus Query: 546 cctcagataccctgcgctcaattgcaccttcaaggcactggat 588 ||||||| ||||| || ||||| ||| |||||||||||||||| Sbjct: 22091794 cctcagacaccctccgttcaatagcagcttcaaggcactggat 22091752
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 228 bits (115), Expect = 2e-56 Identities = 241/283 (85%) Strand = Plus / Minus Query: 266 gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325 ||||||||||||||||| || || ||||||||||| || ||| || ||||||||||||| Sbjct: 22085196 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 22085137 Query: 326 ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385 |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || Sbjct: 22085136 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 22085077 Query: 386 atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445 || | || | ||| || || |||||||||||||| ||| ||||||| || |||||| Sbjct: 22085076 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 22085017 Query: 446 acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505 ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 22085016 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 22084957 Query: 506 aggcccaccttgtcatttgaacacagctcaagtttcacaccct 548 ||||| ||||||||||||| || |||||||| |||||||||| Sbjct: 22084956 aggccgaccttgtcatttgtgcagagctcaagcttcacaccct 22084914 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Minus Query: 546 cctcagataccctgcgctcaattgcaccttcaaggcactggat 588 ||||||| ||||| || ||||| ||| |||||||||||||||| Sbjct: 22084823 cctcagacaccctccgttcaatagcagcttcaaggcactggat 22084781
>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete sequence Length = 167397 Score = 228 bits (115), Expect = 2e-56 Identities = 241/283 (85%) Strand = Plus / Plus Query: 266 gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325 ||||||||||||||||| || || ||||||||||| || ||| || ||||||||||||| Sbjct: 56115 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 56174 Query: 326 ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385 |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || Sbjct: 56175 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 56234 Query: 386 atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445 || | || | ||| || || |||||||||||||| ||| ||||||| || |||||| Sbjct: 56235 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 56294 Query: 446 acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505 ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 56295 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 56354 Query: 506 aggcccaccttgtcatttgaacacagctcaagtttcacaccct 548 ||||| ||||||||||||| || |||||||| |||||||||| Sbjct: 56355 aggccgaccttgtcatttgtgcagagctcaagcttcacaccct 56397 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 546 cctcagataccctgcgctcaattgcaccttcaaggcactggat 588 ||||||| ||||| || ||||| ||| |||||||||||||||| Sbjct: 56488 cctcagacaccctccgttcaatagcagcttcaaggcactggat 56530
>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence Length = 132987 Score = 214 bits (108), Expect = 2e-52 Identities = 231/272 (84%) Strand = Plus / Plus Query: 266 gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325 ||||||||||||||||| || || ||||||||||| || ||| || ||||||||||||| Sbjct: 132713 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 132772 Query: 326 ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385 |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || Sbjct: 132773 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 132832 Query: 386 atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445 || | || | ||| || || |||||||||||||| ||| ||||||| || |||||| Sbjct: 132833 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 132892 Query: 446 acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505 ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 132893 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 132952 Query: 506 aggcccaccttgtcatttgaacacagctcaag 537 ||||| ||||||||||||| || |||||||| Sbjct: 132953 aggccgaccttgtcatttgtgcagagctcaag 132984
>dbj|AK071010.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080P13, full insert sequence Length = 1908 Score = 204 bits (103), Expect = 2e-49 Identities = 160/179 (89%) Strand = Plus / Minus Query: 410 tagaatgtgttgacggccgtccttcccctggtgctcacctctgctcttgtgacggtcagg 469 |||||||||||||| ||| ||||||| || ||||||||||| ||||||||||| |||||| Sbjct: 1445 tagaatgtgttgacagccatccttcctctcgtgctcacctccgctcttgtgacagtcagg 1386 Query: 470 ctgttctcccggaagatgcgggtgacctccgacaggaggcccaccttgtcatttgaacac 529 |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| || Sbjct: 1385 ctgttctcgcggaagattcgggtgacctctgacaggaggccgaccttgtcatttgtgcag 1326 Query: 530 agctcaagtttcacaccctcagataccctgcgctcaattgcaccttcaaggcactggat 588 |||||||| |||||||||||||| ||||| || ||||| ||| |||||||||||||||| Sbjct: 1325 agctcaagcttcacaccctcagacaccctccgttcaatagcagcttcaaggcactggat 1267 Score = 107 bits (54), Expect = 4e-20 Identities = 87/98 (88%) Strand = Plus / Minus Query: 266 gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325 ||||||||||||||||| || || ||||||||||| || ||| || ||||||||||||| Sbjct: 1589 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 1530 Query: 326 ttcacctgaatgttgtgccctatggcttccctgatgga 363 |||||||||||||| || |||||||||| ||||||||| Sbjct: 1529 ttcacctgaatgttctggcctatggcttgcctgatgga 1492
>ref|XM_472299.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 467 aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510 |||| |||||| ||||||||||||||||| || || |||||||| Sbjct: 1118 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 1075
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08, complete sequence Length = 145670 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 467 aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510 |||| |||||| ||||||||||||||||| || || |||||||| Sbjct: 63371 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 63328
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 467 aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510 |||| |||||| ||||||||||||||||| || || |||||||| Sbjct: 19281539 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 19281496
>dbj|AK072197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160N15, full insert sequence Length = 1755 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 467 aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510 |||| |||||| ||||||||||||||||| || || |||||||| Sbjct: 1328 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 1285
>dbj|AK067296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102O07, full insert sequence Length = 1929 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 467 aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510 |||| |||||| ||||||||||||||||| || || |||||||| Sbjct: 1309 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 1266
>ref|XM_673866.1| Plasmodium berghei strain ANKA nucleolar GTP-binding protein 1, (PB000526.00.0) partial mRNA Length = 2031 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 24 tcatatttacattcttcatctacgctataat 54 ||||||||| |||||||||||| |||||||| Sbjct: 1424 tcatatttatattcttcatctatgctataat 1394
>ref|XM_483507.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1950 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 466 caggctgttctcccggaagatgcgggtgacctccgacaggag 507 |||||||||||||||||| | || |||| |||||||||||| Sbjct: 1448 caggctgttctcccggaacacacgcgtgatctccgacaggag 1407
>ref|XM_507598.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702E04.39 mRNA Length = 1988 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 466 caggctgttctcccggaagatgcgggtgacctccgacaggag 507 |||||||||||||||||| | || |||| |||||||||||| Sbjct: 1506 caggctgttctcccggaacacacgcgtgatctccgacaggag 1465
>ref|XM_507306.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702E04.39 mRNA Length = 1988 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 466 caggctgttctcccggaagatgcgggtgacctccgacaggag 507 |||||||||||||||||| | || |||| |||||||||||| Sbjct: 1506 caggctgttctcccggaacacacgcgtgatctccgacaggag 1465
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 466 caggctgttctcccggaagatgcgggtgacctccgacaggag 507 |||||||||||||||||| | || |||| |||||||||||| Sbjct: 26597795 caggctgttctcccggaacacacgcgtgatctccgacaggag 26597754
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 466 caggctgttctcccggaagatgcgggtgacctccgacaggag 507 |||||||||||||||||| | || |||| |||||||||||| Sbjct: 9322 caggctgttctcccggaacacacgcgtgatctccgacaggag 9281
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702E04 Length = 190948 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 466 caggctgttctcccggaagatgcgggtgacctccgacaggag 507 |||||||||||||||||| | || |||| |||||||||||| Sbjct: 146662 caggctgttctcccggaacacacgcgtgatctccgacaggag 146621
>dbj|AK106161.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A12, full insert sequence Length = 1988 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 466 caggctgttctcccggaagatgcgggtgacctccgacaggag 507 |||||||||||||||||| | || |||| |||||||||||| Sbjct: 1506 caggctgttctcccggaacacacgcgtgatctccgacaggag 1465
>dbj|AK098885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I07, full insert sequence Length = 1950 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 466 caggctgttctcccggaagatgcgggtgacctccgacaggag 507 |||||||||||||||||| | || |||| |||||||||||| Sbjct: 1448 caggctgttctcccggaacacacgcgtgatctccgacaggag 1407
>dbj|AK061731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C04, full insert sequence Length = 1988 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 466 caggctgttctcccggaagatgcgggtgacctccgacaggag 507 |||||||||||||||||| | || |||| |||||||||||| Sbjct: 1506 caggctgttctcccggaacacacgcgtgatctccgacaggag 1465
>gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, complete sequence Length = 202851 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 ggctagagagagaccttggcc 254 ||||||||||||||||||||| Sbjct: 58568 ggctagagagagaccttggcc 58548
>gb|AC122266.2| Mus musculus BAC clone RP23-213K18 from 8, complete sequence Length = 195246 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 tgctggtgcctcaggctggcc 324 ||||||||||||||||||||| Sbjct: 101552 tgctggtgcctcaggctggcc 101572
>gb|AC158362.5| Mus musculus BAC clone RP23-214K5 from chromosome 8, complete sequence Length = 201185 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 tgctggtgcctcaggctggcc 324 ||||||||||||||||||||| Sbjct: 148557 tgctggtgcctcaggctggcc 148537
>emb|AL596084.13| Mouse DNA sequence from clone RP23-196B5 on chromosome 11 Contains the Pank3 gene for pantothenate kinase 3, a pseudogene similar to part of ribosomal protein L7a (Rpl7a), a pseudogene similar to part of fibrillarin (Fbl), the Rars gene for arginyl-tRNA synthetase, the 3' end of the gene for a novel protein similar to human KIBRA and two CpG islands, complete sequence Length = 181103 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 ttcagcagctaaggtttgatt 189 ||||||||||||||||||||| Sbjct: 37774 ttcagcagctaaggtttgatt 37754
>ref|XM_688849.1| PREDICTED: Danio rerio hypothetical protein LOC565580 (LOC565580), mRNA Length = 2253 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 tctttcttctgaggtgctggt 310 ||||||||||||||||||||| Sbjct: 1667 tctttcttctgaggtgctggt 1647
>ref|NM_113307.2| Arabidopsis thaliana unknown protein AT3G24020 mRNA, complete cds Length = 919 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 cctgatggaatcaatggtct 374 |||||||||||||||||||| Sbjct: 760 cctgatggaatcaatggtct 741
>ref|NM_113308.3| Arabidopsis thaliana catalytic/ hydroxyethylthiazole kinase AT3G24030 mRNA, complete cds Length = 1504 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 cctgatggaatcaatggtct 374 |||||||||||||||||||| Sbjct: 1196 cctgatggaatcaatggtct 1215
>ref|XM_706998.1| Candida albicans SC5314 putative alanine glyoxylate aminotransferase (CaO19.1078), mRNA Length = 420 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 ttccctgatggaatcaatgg 371 |||||||||||||||||||| Sbjct: 229 ttccctgatggaatcaatgg 248
>ref|XM_706973.1| Candida albicans SC5314 putative alanine glyoxylate aminotransferase (CaO19.8679), mRNA Length = 420 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 ttccctgatggaatcaatgg 371 |||||||||||||||||||| Sbjct: 229 ttccctgatggaatcaatgg 248
>gb|AC061709.25| Homo sapiens 12 BAC RP11-417O18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 208524 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 ttccctgatggaatcaatgg 371 |||||||||||||||||||| Sbjct: 113158 ttccctgatggaatcaatgg 113177
>gb|BT008336.1| Arabidopsis thaliana At3g24020 mRNA, complete cds Length = 732 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 cctgatggaatcaatggtct 374 |||||||||||||||||||| Sbjct: 671 cctgatggaatcaatggtct 652
>emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chromosome 11 Contains part of the Accn1 gene for neuronal amiloride-sensitive cation channel 1 (degenerin), a CpG island and a novel gene, complete sequence Length = 170821 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 ccctggtgctcacctctgct 454 |||||||||||||||||||| Sbjct: 115868 ccctggtgctcacctctgct 115887
>gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, complete sequence Length = 200105 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tgtatgtaaactaaccctgc 127 |||||||||||||||||||| Sbjct: 135905 tgtatgtaaactaaccctgc 135924
>gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, complete sequence Length = 166236 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 58 caatgcatatttacaggtgatgggatgg 85 |||||| ||||| ||||||||||||||| Sbjct: 87401 caatgcttatttccaggtgatgggatgg 87374
>dbj|AP001297.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13 Length = 106203 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 cctgatggaatcaatggtct 374 |||||||||||||||||||| Sbjct: 82341 cctgatggaatcaatggtct 82322
>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence Length = 241077 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggtgcctcaggctggccttt 327 |||||||||||||||||||| Sbjct: 91556 ggtgcctcaggctggccttt 91575 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,300,164 Number of Sequences: 3902068 Number of extensions: 4300164 Number of successful extensions: 73791 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73668 Number of HSP's gapped (non-prelim): 123 length of query: 589 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 566 effective length of database: 17,143,297,704 effective search space: 9703106500464 effective search space used: 9703106500464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)