ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_184953.1| Oryza sativa (japonica cultivar-group), mRNA 268 2e-68
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 228 2e-56
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 228 2e-56
4gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom... 228 2e-56
5gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic ... 214 2e-52
6dbj|AK071010.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
7ref|XM_472299.1| Oryza sativa (japonica cultivar-group), predic... 48 0.033
8emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4,... 48 0.033
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.033
10dbj|AK072197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.033
11dbj|AK067296.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.033
12ref|XM_673866.1| Plasmodium berghei strain ANKA nucleolar GTP-bi... 46 0.13
13ref|XM_483507.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.51
14ref|XM_507598.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.51
15ref|XM_507306.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.51
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
17dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
18dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
19dbj|AK106161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.51
20dbj|AK098885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.51
21dbj|AK061731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.51
22gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, co... 42 2.0
23gb|AC122266.2| Mus musculus BAC clone RP23-213K18 from 8, comple... 42 2.0
24gb|AC158362.5| Mus musculus BAC clone RP23-214K5 from chromosome... 42 2.0
25emb|AL596084.13| Mouse DNA sequence from clone RP23-196B5 on chr... 42 2.0
26ref|XM_688849.1| PREDICTED: Danio rerio hypothetical protein LOC... 42 2.0
27ref|NM_113307.2| Arabidopsis thaliana unknown protein AT3G24020 ... 40 8.0
28ref|NM_113308.3| Arabidopsis thaliana catalytic/ hydroxyethylthi... 40 8.0
29ref|XM_706998.1| Candida albicans SC5314 putative alanine glyoxy... 40 8.0
30ref|XM_706973.1| Candida albicans SC5314 putative alanine glyoxy... 40 8.0
31gb|AC061709.25| Homo sapiens 12 BAC RP11-417O18 (Roswell Park Ca... 40 8.0
32gb|BT008336.1| Arabidopsis thaliana At3g24020 mRNA, complete cds 40 8.0
33emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chr... 40 8.0
34gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, com... 40 8.0
35gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, co... 40 8.0
36dbj|AP001297.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.0
37gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome ... 40 8.0

>ref|NM_184953.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1893

 Score =  268 bits (135), Expect = 2e-68
 Identities = 276/323 (85%)
 Strand = Plus / Minus

                                                                        
Query: 266  gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325
            ||||||||||||||||| || || ||||||||||| ||  ||| || |||||||||||||
Sbjct: 1574 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 1515

                                                                        
Query: 326  ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385
            |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || 
Sbjct: 1514 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 1455

                                                                        
Query: 386  atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445
             || | || |  |||   || || |||||||||||||| ||| ||||||| || ||||||
Sbjct: 1454 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 1395

                                                                        
Query: 446  acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505
            ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1394 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 1335

                                                                        
Query: 506  aggcccaccttgtcatttgaacacagctcaagtttcacaccctcagataccctgcgctca 565
            ||||| |||||||||||||  || |||||||| |||||||||||||| ||||| || |||
Sbjct: 1334 aggccgaccttgtcatttgtgcagagctcaagcttcacaccctcagacaccctccgttca 1275

                                   
Query: 566  attgcaccttcaaggcactggat 588
            || ||| ||||||||||||||||
Sbjct: 1274 atagcagcttcaaggcactggat 1252



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  228 bits (115), Expect = 2e-56
 Identities = 241/283 (85%)
 Strand = Plus / Minus

                                                                            
Query: 266      gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325
                ||||||||||||||||| || || ||||||||||| ||  ||| || |||||||||||||
Sbjct: 22092167 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 22092108

                                                                            
Query: 326      ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385
                |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || 
Sbjct: 22092107 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 22092048

                                                                            
Query: 386      atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445
                 || | || |  |||   || || |||||||||||||| ||| ||||||| || ||||||
Sbjct: 22092047 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 22091988

                                                                            
Query: 446      acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505
                ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 22091987 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 22091928

                                                           
Query: 506      aggcccaccttgtcatttgaacacagctcaagtttcacaccct 548
                ||||| |||||||||||||  || |||||||| ||||||||||
Sbjct: 22091927 aggccgaccttgtcatttgtgcagagctcaagcttcacaccct 22091885



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 546      cctcagataccctgcgctcaattgcaccttcaaggcactggat 588
                ||||||| ||||| || ||||| ||| ||||||||||||||||
Sbjct: 22091794 cctcagacaccctccgttcaatagcagcttcaaggcactggat 22091752



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  228 bits (115), Expect = 2e-56
 Identities = 241/283 (85%)
 Strand = Plus / Minus

                                                                            
Query: 266      gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325
                ||||||||||||||||| || || ||||||||||| ||  ||| || |||||||||||||
Sbjct: 22085196 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 22085137

                                                                            
Query: 326      ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385
                |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || 
Sbjct: 22085136 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 22085077

                                                                            
Query: 386      atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445
                 || | || |  |||   || || |||||||||||||| ||| ||||||| || ||||||
Sbjct: 22085076 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 22085017

                                                                            
Query: 446      acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505
                ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 22085016 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 22084957

                                                           
Query: 506      aggcccaccttgtcatttgaacacagctcaagtttcacaccct 548
                ||||| |||||||||||||  || |||||||| ||||||||||
Sbjct: 22084956 aggccgaccttgtcatttgtgcagagctcaagcttcacaccct 22084914



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 546      cctcagataccctgcgctcaattgcaccttcaaggcactggat 588
                ||||||| ||||| || ||||| ||| ||||||||||||||||
Sbjct: 22084823 cctcagacaccctccgttcaatagcagcttcaaggcactggat 22084781



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>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete
             sequence
          Length = 167397

 Score =  228 bits (115), Expect = 2e-56
 Identities = 241/283 (85%)
 Strand = Plus / Plus

                                                                         
Query: 266   gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325
             ||||||||||||||||| || || ||||||||||| ||  ||| || |||||||||||||
Sbjct: 56115 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 56174

                                                                         
Query: 326   ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385
             |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || 
Sbjct: 56175 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 56234

                                                                         
Query: 386   atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445
              || | || |  |||   || || |||||||||||||| ||| ||||||| || ||||||
Sbjct: 56235 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 56294

                                                                         
Query: 446   acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505
             ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 56295 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 56354

                                                        
Query: 506   aggcccaccttgtcatttgaacacagctcaagtttcacaccct 548
             ||||| |||||||||||||  || |||||||| ||||||||||
Sbjct: 56355 aggccgaccttgtcatttgtgcagagctcaagcttcacaccct 56397



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 546   cctcagataccctgcgctcaattgcaccttcaaggcactggat 588
             ||||||| ||||| || ||||| ||| ||||||||||||||||
Sbjct: 56488 cctcagacaccctccgttcaatagcagcttcaaggcactggat 56530



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>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete
              sequence
          Length = 132987

 Score =  214 bits (108), Expect = 2e-52
 Identities = 231/272 (84%)
 Strand = Plus / Plus

                                                                          
Query: 266    gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325
              ||||||||||||||||| || || ||||||||||| ||  ||| || |||||||||||||
Sbjct: 132713 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 132772

                                                                          
Query: 326    ttcacctgaatgttgtgccctatggcttccctgatggaatcaatggtcttctggtcgact 385
              |||||||||||||| || |||||||||| ||||||||| || || |||||||| || || 
Sbjct: 132773 ttcacctgaatgttctggcctatggcttgcctgatggagtctattgtcttctgatcaacc 132832

                                                                          
Query: 386    atctcccccgcagaactccggacgtagaatgtgttgacggccgtccttcccctggtgctc 445
               || | || |  |||   || || |||||||||||||| ||| ||||||| || ||||||
Sbjct: 132833 gtccctcctgtggaatcgcgaacatagaatgtgttgacagccatccttcctctcgtgctc 132892

                                                                          
Query: 446    acctctgctcttgtgacggtcaggctgttctcccggaagatgcgggtgacctccgacagg 505
              ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 132893 acctccgctcttgtgacagtcaggctgttctcgcggaagattcgggtgacctctgacagg 132952

                                              
Query: 506    aggcccaccttgtcatttgaacacagctcaag 537
              ||||| |||||||||||||  || ||||||||
Sbjct: 132953 aggccgaccttgtcatttgtgcagagctcaag 132984



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>dbj|AK071010.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080P13, full
            insert sequence
          Length = 1908

 Score =  204 bits (103), Expect = 2e-49
 Identities = 160/179 (89%)
 Strand = Plus / Minus

                                                                        
Query: 410  tagaatgtgttgacggccgtccttcccctggtgctcacctctgctcttgtgacggtcagg 469
            |||||||||||||| ||| ||||||| || ||||||||||| ||||||||||| ||||||
Sbjct: 1445 tagaatgtgttgacagccatccttcctctcgtgctcacctccgctcttgtgacagtcagg 1386

                                                                        
Query: 470  ctgttctcccggaagatgcgggtgacctccgacaggaggcccaccttgtcatttgaacac 529
            |||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||  || 
Sbjct: 1385 ctgttctcgcggaagattcgggtgacctctgacaggaggccgaccttgtcatttgtgcag 1326

                                                                       
Query: 530  agctcaagtttcacaccctcagataccctgcgctcaattgcaccttcaaggcactggat 588
            |||||||| |||||||||||||| ||||| || ||||| ||| ||||||||||||||||
Sbjct: 1325 agctcaagcttcacaccctcagacaccctccgttcaatagcagcttcaaggcactggat 1267



 Score =  107 bits (54), Expect = 4e-20
 Identities = 87/98 (88%)
 Strand = Plus / Minus

                                                                        
Query: 266  gcgaagaggaaccatgtcggggagtctttcttctgaggtgctggtgcctcaggctggcct 325
            ||||||||||||||||| || || ||||||||||| ||  ||| || |||||||||||||
Sbjct: 1589 gcgaagaggaaccatgtgggtgactctttcttctgtggctctgatggctcaggctggcct 1530

                                                  
Query: 326  ttcacctgaatgttgtgccctatggcttccctgatgga 363
            |||||||||||||| || |||||||||| |||||||||
Sbjct: 1529 ttcacctgaatgttctggcctatggcttgcctgatgga 1492



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>ref|XM_472299.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1413

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 467  aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510
            |||| |||||| ||||||||||||||||| || || ||||||||
Sbjct: 1118 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 1075



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>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
             complete sequence
          Length = 145670

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 467   aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510
             |||| |||||| ||||||||||||||||| || || ||||||||
Sbjct: 63371 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 63328



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 467      aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510
                |||| |||||| ||||||||||||||||| || || ||||||||
Sbjct: 19281539 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 19281496



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>dbj|AK072197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160N15, full
            insert sequence
          Length = 1755

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 467  aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510
            |||| |||||| ||||||||||||||||| || || ||||||||
Sbjct: 1328 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 1285



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>dbj|AK067296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102O07, full
            insert sequence
          Length = 1929

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 467  aggctgttctcccggaagatgcgggtgacctccgacaggaggcc 510
            |||| |||||| ||||||||||||||||| || || ||||||||
Sbjct: 1309 aggccgttctcgcggaagatgcgggtgacgtcggagaggaggcc 1266



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>ref|XM_673866.1| Plasmodium berghei strain ANKA nucleolar GTP-binding protein 1,
            (PB000526.00.0) partial mRNA
          Length = 2031

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 24   tcatatttacattcttcatctacgctataat 54
            ||||||||| |||||||||||| ||||||||
Sbjct: 1424 tcatatttatattcttcatctatgctataat 1394



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>ref|XM_483507.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1950

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 466  caggctgttctcccggaagatgcgggtgacctccgacaggag 507
            |||||||||||||||||| |  || |||| ||||||||||||
Sbjct: 1448 caggctgttctcccggaacacacgcgtgatctccgacaggag 1407



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>ref|XM_507598.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702E04.39 mRNA
          Length = 1988

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 466  caggctgttctcccggaagatgcgggtgacctccgacaggag 507
            |||||||||||||||||| |  || |||| ||||||||||||
Sbjct: 1506 caggctgttctcccggaacacacgcgtgatctccgacaggag 1465



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>ref|XM_507306.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702E04.39 mRNA
          Length = 1988

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 466  caggctgttctcccggaagatgcgggtgacctccgacaggag 507
            |||||||||||||||||| |  || |||| ||||||||||||
Sbjct: 1506 caggctgttctcccggaacacacgcgtgatctccgacaggag 1465



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 466      caggctgttctcccggaagatgcgggtgacctccgacaggag 507
                |||||||||||||||||| |  || |||| ||||||||||||
Sbjct: 26597795 caggctgttctcccggaacacacgcgtgatctccgacaggag 26597754



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>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0702C09
          Length = 138203

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 466  caggctgttctcccggaagatgcgggtgacctccgacaggag 507
            |||||||||||||||||| |  || |||| ||||||||||||
Sbjct: 9322 caggctgttctcccggaacacacgcgtgatctccgacaggag 9281



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>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0702E04
          Length = 190948

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 466    caggctgttctcccggaagatgcgggtgacctccgacaggag 507
              |||||||||||||||||| |  || |||| ||||||||||||
Sbjct: 146662 caggctgttctcccggaacacacgcgtgatctccgacaggag 146621



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>dbj|AK106161.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A12, full
            insert sequence
          Length = 1988

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 466  caggctgttctcccggaagatgcgggtgacctccgacaggag 507
            |||||||||||||||||| |  || |||| ||||||||||||
Sbjct: 1506 caggctgttctcccggaacacacgcgtgatctccgacaggag 1465



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>dbj|AK098885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I07, full
            insert sequence
          Length = 1950

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 466  caggctgttctcccggaagatgcgggtgacctccgacaggag 507
            |||||||||||||||||| |  || |||| ||||||||||||
Sbjct: 1448 caggctgttctcccggaacacacgcgtgatctccgacaggag 1407



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>dbj|AK061731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C04, full
            insert sequence
          Length = 1988

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 466  caggctgttctcccggaagatgcgggtgacctccgacaggag 507
            |||||||||||||||||| |  || |||| ||||||||||||
Sbjct: 1506 caggctgttctcccggaacacacgcgtgatctccgacaggag 1465



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>gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, complete sequence
          Length = 202851

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   ggctagagagagaccttggcc 254
             |||||||||||||||||||||
Sbjct: 58568 ggctagagagagaccttggcc 58548



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>gb|AC122266.2| Mus musculus BAC clone RP23-213K18 from 8, complete sequence
          Length = 195246

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 304    tgctggtgcctcaggctggcc 324
              |||||||||||||||||||||
Sbjct: 101552 tgctggtgcctcaggctggcc 101572



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>gb|AC158362.5| Mus musculus BAC clone RP23-214K5 from chromosome 8, complete sequence
          Length = 201185

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 304    tgctggtgcctcaggctggcc 324
              |||||||||||||||||||||
Sbjct: 148557 tgctggtgcctcaggctggcc 148537



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>emb|AL596084.13| Mouse DNA sequence from clone RP23-196B5 on chromosome 11 Contains the
             Pank3 gene for pantothenate kinase 3, a pseudogene similar
             to part of ribosomal protein L7a (Rpl7a), a pseudogene
             similar to part of fibrillarin (Fbl), the Rars gene for
             arginyl-tRNA synthetase, the 3' end of the gene for a
             novel protein similar to human KIBRA and two CpG islands,
             complete sequence
          Length = 181103

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 169   ttcagcagctaaggtttgatt 189
             |||||||||||||||||||||
Sbjct: 37774 ttcagcagctaaggtttgatt 37754



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>ref|XM_688849.1| PREDICTED: Danio rerio hypothetical protein LOC565580 (LOC565580),
            mRNA
          Length = 2253

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 290  tctttcttctgaggtgctggt 310
            |||||||||||||||||||||
Sbjct: 1667 tctttcttctgaggtgctggt 1647



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>ref|NM_113307.2| Arabidopsis thaliana unknown protein AT3G24020 mRNA, complete cds
          Length = 919

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 cctgatggaatcaatggtct 374
           ||||||||||||||||||||
Sbjct: 760 cctgatggaatcaatggtct 741



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>ref|NM_113308.3| Arabidopsis thaliana catalytic/ hydroxyethylthiazole kinase AT3G24030
            mRNA, complete cds
          Length = 1504

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  cctgatggaatcaatggtct 374
            ||||||||||||||||||||
Sbjct: 1196 cctgatggaatcaatggtct 1215



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>ref|XM_706998.1| Candida albicans SC5314 putative alanine glyoxylate
           aminotransferase (CaO19.1078), mRNA
          Length = 420

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 352 ttccctgatggaatcaatgg 371
           ||||||||||||||||||||
Sbjct: 229 ttccctgatggaatcaatgg 248



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>ref|XM_706973.1| Candida albicans SC5314 putative alanine glyoxylate
           aminotransferase (CaO19.8679), mRNA
          Length = 420

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 352 ttccctgatggaatcaatgg 371
           ||||||||||||||||||||
Sbjct: 229 ttccctgatggaatcaatgg 248



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>gb|AC061709.25| Homo sapiens 12 BAC RP11-417O18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 208524

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    ttccctgatggaatcaatgg 371
              ||||||||||||||||||||
Sbjct: 113158 ttccctgatggaatcaatgg 113177



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>gb|BT008336.1| Arabidopsis thaliana At3g24020 mRNA, complete cds
          Length = 732

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 cctgatggaatcaatggtct 374
           ||||||||||||||||||||
Sbjct: 671 cctgatggaatcaatggtct 652



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>emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chromosome 11 Contains part
              of the Accn1 gene for neuronal amiloride-sensitive cation
              channel 1 (degenerin), a CpG island and a novel gene,
              complete sequence
          Length = 170821

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 435    ccctggtgctcacctctgct 454
              ||||||||||||||||||||
Sbjct: 115868 ccctggtgctcacctctgct 115887



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>gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, complete sequence
          Length = 200105

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    tgtatgtaaactaaccctgc 127
              ||||||||||||||||||||
Sbjct: 135905 tgtatgtaaactaaccctgc 135924



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>gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, complete sequence
          Length = 166236

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 58    caatgcatatttacaggtgatgggatgg 85
             |||||| ||||| |||||||||||||||
Sbjct: 87401 caatgcttatttccaggtgatgggatgg 87374



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>dbj|AP001297.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13
          Length = 106203

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   cctgatggaatcaatggtct 374
             ||||||||||||||||||||
Sbjct: 82341 cctgatggaatcaatggtct 82322



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>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence
          Length = 241077

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   ggtgcctcaggctggccttt 327
             ||||||||||||||||||||
Sbjct: 91556 ggtgcctcaggctggccttt 91575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,300,164
Number of Sequences: 3902068
Number of extensions: 4300164
Number of successful extensions: 73791
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73668
Number of HSP's gapped (non-prelim): 123
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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