ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24l18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3 32 0.89
2M3K4_MOUSE (O08648) Mitogen-activated protein kinase kinase kina... 30 4.4
3ACC2B_BRARE (Q708S7) Amiloride-sensitive cation channel 2-B, neu... 29 9.9
4ZFP6_ARATH (Q39265) Zinc finger protein 6 29 9.9
5UL16_HHV11 (P10200) Protein UL16 29 9.9

>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 320 AILATDCVCVCVCLFAKKKDCCCVIHVFLFHVCV 219
           +IL++ CVCVCVC+      C CV+     +VCV
Sbjct: 367 SILSSVCVCVCVCVCMYV--CMCVMESACVYVCV 398



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>M3K4_MOUSE (O08648) Mitogen-activated protein kinase kinase kinase 4 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4)
           (MEKK 4)
          Length = 1597

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 541 RPSPLHQCCPRAILWCFXSR*APPSIESDASPSIDSAGWRTLF 413
           +P P  +CCP A   C     A  S+ESD     D     TL+
Sbjct: 32  QPEPDPECCPAARQECMLGESARKSMESDPEDFSDETNTETLY 74



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>ACC2B_BRARE (Q708S7) Amiloride-sensitive cation channel 2-B, neuronal|
           (Acid-sensing ion channel 1.2) (ZASIC1.2)
          Length = 501

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 353 TLHGLPHIWRFAILATDCVCVCVCLFAKKKDCCCVIHVFLFHVCVD 216
           TLHG+ HI+ +  +   C C+ V  F            FL +VC+D
Sbjct: 31  TLHGISHIFSYEKITAKC-CLWVVFFLSSL-------TFLMYVCID 68



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>ZFP6_ARATH (Q39265) Zinc finger protein 6|
          Length = 197

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 495 VXSVARLPHLLNQMH--PHRLIRPAGEHYXWI 406
           + + A LPHLL+Q H  PH ++ P+     W+
Sbjct: 95  LSAFAPLPHLLSQPHPPPHMMLSPSSSSSKWL 126



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>UL16_HHV11 (P10200) Protein UL16|
          Length = 373

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
 Frame = -2

Query: 431 RLENIIXGLHNCAPI*RKASPKQKVCTLHGLPHI------WRFAILATDCVCVCVCLFAK 270
           R+ N   G  +CAP                 PHI      W  +++   C CV  CL+AK
Sbjct: 236 RITNHPGGCESCAPP----------------PHIDSANALWLSSVVTESCPCVAPCLWAK 279

Query: 269 KKDCCCVI 246
              C   +
Sbjct: 280 MAQCTLAV 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,775,277
Number of Sequences: 219361
Number of extensions: 1786135
Number of successful extensions: 3777
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3747
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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