ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF523525.1| Gavia immer clone TUMWGi6.1.8 microsatellite sequ... 40 3.1
2gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Can... 40 3.1
3emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, ... 40 3.1
4emb|BX247950.12| Zebrafish DNA sequence from clone CH211-51G21, ... 40 3.1
5gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, c... 40 3.1
6emb|AJ421479.1| Mus musculus X-inactivation center region; segme... 40 3.1
7emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chr... 40 3.1

>gb|AF523525.1| Gavia immer clone TUMWGi6.1.8 microsatellite sequence
          Length = 479

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 agagacaggctcacatctta 194
           ||||||||||||||||||||
Sbjct: 219 agagacaggctcacatctta 238



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>gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75001

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aaatacataaataaggagaa 132
             ||||||||||||||||||||
Sbjct: 15221 aaatacataaataaggagaa 15202



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>emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, complete sequence
          Length = 202570

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    ggcaccaacacagagacagg 183
              ||||||||||||||||||||
Sbjct: 123380 ggcaccaacacagagacagg 123361



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>emb|BX247950.12| Zebrafish DNA sequence from clone CH211-51G21, complete sequence
          Length = 172752

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    ggcaccaacacagagacagg 183
              ||||||||||||||||||||
Sbjct: 163530 ggcaccaacacagagacagg 163511



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>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence
          Length = 184139

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   acaggctcacatcttagagg 198
             ||||||||||||||||||||
Sbjct: 98897 acaggctcacatcttagagg 98916



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>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3
          Length = 252150

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tcatgatgcatcacaacagt 57
              ||||||||||||||||||||
Sbjct: 247239 tcatgatgcatcacaacagt 247220



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>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete
             sequence
          Length = 229724

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    tcatgatgcatcacaacagt 57
             ||||||||||||||||||||
Sbjct: 35009 tcatgatgcatcacaacagt 35028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,807,896
Number of Sequences: 3902068
Number of extensions: 1807896
Number of successful extensions: 42546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42535
Number of HSP's gapped (non-prelim): 11
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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