ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal25a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain... 30 6.9
2PGP2_SULSO (P95931) Phosphoglycolate phosphatase 2 (EC 3.1.3.18)... 30 6.9
3CYAA_NEUCR (Q01631) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophos... 29 9.0

>PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain-containing|
            protein 16) (Transcription factor MEL1)
          Length = 1276

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 86   PFPFHPISYKASPDPXTTRPSL--GASKSACLRCGHMTNGSADL 211
            P P HP +++ SP P  + P L  G  +  C  CG +   SA+L
Sbjct: 924  PLPHHPFNFR-SPPPTLSDPILRKGKERYTCRYCGKIFPRSANL 966



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>PGP2_SULSO (P95931) Phosphoglycolate phosphatase 2 (EC 3.1.3.18) (PGPase 2)|
           (PGP 2)
          Length = 233

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
 Frame = -3

Query: 559 SPALTQQEQEMLRDVKYRKFVPGISKSQEF-DTKARHMKQSRLIKSNSHSPSSGNRKEFL 383
           SP ++Q+  E  +  KY KFV    + ++F D  A  +K +  I  N       +R+  L
Sbjct: 28  SPIVSQKVNEFSK--KY-KFVVVTGREKKFIDKLAVGLKPTAWILENGSLILFNDREFVL 84

Query: 382 SIRSLLPVIDFEIDRTKALDMIDNLKVQ 299
             +S      FE DR K ++++DNLKV+
Sbjct: 85  CEKSW-----FERDRKKIIEILDNLKVR 107



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>CYAA_NEUCR (Q01631) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 2300

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 92  PFHPISYKASPDPXTTRPSLGASKSACLRCGHMTNGSADLMYTSS 226
           P H    K++ DP   +PSL    SA        NGS+ +M T S
Sbjct: 477 PGHHKHNKSNEDPRALKPSLSREDSAASFARDFRNGSSSMMGTRS 521


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,231,445
Number of Sequences: 219361
Number of extensions: 1774975
Number of successful extensions: 4641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4639
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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