ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal24k20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478106.1| Oryza sativa (japonica cultivar-group), mRNA Length = 873 Score = 186 bits (94), Expect = 4e-44 Identities = 229/274 (83%) Strand = Plus / Minus Query: 164 actacgggaggtggagcagccgatcaacagccaaatctagtgaatcaacgatcttccgca 223 |||| |||||| |||||| | ||| |||||||| |||||||||||||| ||||||| | Sbjct: 519 actaggggaggcggagcaactgattgacagccaagtctagtgaatcaacattcttccgta 460 Query: 224 tgatctttagctgcatacttaggctttccaagcctcgcatttcctcatttaacctcaggc 283 |||||||| ||||| ||||||||||| |||| |||||||||||| ||||||| || Sbjct: 459 aaatctttagttgcatggctaggctttccagacctctcatttcctcattcaacctcaagc 400 Query: 284 acgaatggatgtacttattccctctagaagacgcttcaagtgctgactcctggaggcggc 343 |||||| |||||||||||| ||| | ||||| ||||| ||||| || || |||||||||| Sbjct: 399 acgaattgatgtacttatttcctttcgaagaagcttcgagtgcggattcttggaggcggc 340 Query: 344 ctacaacttcgcccaagcactccatgttatccgctgacgtcgaggtaacattggaaagcg 403 | || || || |||| |||||||||||| ||||| ||||||||||| || |||| || | Sbjct: 339 cgacgacgtctcccaggcactccatgttctccgccgacgtcgaggtgacgttggcgaggg 280 Query: 404 tgatgcggagggaggcgaatagggaggcgtagct 437 || ||||||||||||||| |||||||||||||| Sbjct: 279 cgacgcggagggaggcgaagagggaggcgtagct 246
>dbj|AK108064.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B06, full insert sequence Length = 873 Score = 186 bits (94), Expect = 4e-44 Identities = 229/274 (83%) Strand = Plus / Minus Query: 164 actacgggaggtggagcagccgatcaacagccaaatctagtgaatcaacgatcttccgca 223 |||| |||||| |||||| | ||| |||||||| |||||||||||||| ||||||| | Sbjct: 519 actaggggaggcggagcaactgattgacagccaagtctagtgaatcaacattcttccgta 460 Query: 224 tgatctttagctgcatacttaggctttccaagcctcgcatttcctcatttaacctcaggc 283 |||||||| ||||| ||||||||||| |||| |||||||||||| ||||||| || Sbjct: 459 aaatctttagttgcatggctaggctttccagacctctcatttcctcattcaacctcaagc 400 Query: 284 acgaatggatgtacttattccctctagaagacgcttcaagtgctgactcctggaggcggc 343 |||||| |||||||||||| ||| | ||||| ||||| ||||| || || |||||||||| Sbjct: 399 acgaattgatgtacttatttcctttcgaagaagcttcgagtgcggattcttggaggcggc 340 Query: 344 ctacaacttcgcccaagcactccatgttatccgctgacgtcgaggtaacattggaaagcg 403 | || || || |||| |||||||||||| ||||| ||||||||||| || |||| || | Sbjct: 339 cgacgacgtctcccaggcactccatgttctccgccgacgtcgaggtgacgttggcgaggg 280 Query: 404 tgatgcggagggaggcgaatagggaggcgtagct 437 || ||||||||||||||| |||||||||||||| Sbjct: 279 cgacgcggagggaggcgaagagggaggcgtagct 246
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 334 tggaggcggcctacaacttcgcccaagcactccatgttatccgctgacgtcgaggt 389 ||||||||||| || || || |||| |||||||||||| ||||| ||||||||||| Sbjct: 17630997 tggaggcggccgacgacgtctcccaggcactccatgttctccgccgacgtcgaggt 17630942 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 275 acctcaggcacgaatggatgtacttattccctctagaagacgcttcaagtgctg 328 |||||| |||||||| |||||||||||| ||| | ||||| ||||| ||||||| Sbjct: 17631425 acctcaagcacgaattgatgtacttatttcctttcgaagaagcttcgagtgctg 17631372 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 408 gcggagggaggcgaatagggaggcgtagct 437 ||||||||||||||| |||||||||||||| Sbjct: 17630746 gcggagggaggcgaagagggaggcgtagct 17630717 Score = 44.1 bits (22), Expect = 0.38 Identities = 49/58 (84%) Strand = Plus / Minus Query: 164 actacgggaggtggagcagccgatcaacagccaaatctagtgaatcaacgatcttccg 221 |||| |||||| |||||| | ||| |||||||| |||||||||||||| ||||||| Sbjct: 17631912 actaggggaggcggagcaactgattgacagccaagtctagtgaatcaacattcttccg 17631855 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 243 taggctttccaagcctcgcatttcctcatttaacct 278 ||||||||||| |||| |||||||||||| ||||| Sbjct: 17631694 taggctttccagacctctcatttcctcattcaacct 17631659
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_F08 Length = 134988 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 334 tggaggcggcctacaacttcgcccaagcactccatgttatccgctgacgtcgaggt 389 ||||||||||| || || || |||| |||||||||||| ||||| ||||||||||| Sbjct: 35030 tggaggcggccgacgacgtctcccaggcactccatgttctccgccgacgtcgaggt 34975 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 275 acctcaggcacgaatggatgtacttattccctctagaagacgcttcaagtgctg 328 |||||| |||||||| |||||||||||| ||| | ||||| ||||| ||||||| Sbjct: 35458 acctcaagcacgaattgatgtacttatttcctttcgaagaagcttcgagtgctg 35405 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 408 gcggagggaggcgaatagggaggcgtagct 437 ||||||||||||||| |||||||||||||| Sbjct: 34779 gcggagggaggcgaagagggaggcgtagct 34750 Score = 44.1 bits (22), Expect = 0.38 Identities = 49/58 (84%) Strand = Plus / Minus Query: 164 actacgggaggtggagcagccgatcaacagccaaatctagtgaatcaacgatcttccg 221 |||| |||||| |||||| | ||| |||||||| |||||||||||||| ||||||| Sbjct: 35945 actaggggaggcggagcaactgattgacagccaagtctagtgaatcaacattcttccg 35888 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 243 taggctttccaagcctcgcatttcctcatttaacct 278 ||||||||||| |||| |||||||||||| ||||| Sbjct: 35727 taggctttccagacctctcatttcctcattcaacct 35692
>dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0045A07 Length = 174165 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 334 tggaggcggcctacaacttcgcccaagcactccatgttatccgctgacgtcgaggt 389 ||||||||||| || || || |||| |||||||||||| ||||| ||||||||||| Sbjct: 158946 tggaggcggccgacgacgtctcccaggcactccatgttctccgccgacgtcgaggt 158891 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 275 acctcaggcacgaatggatgtacttattccctctagaagacgcttcaagtgctg 328 |||||| |||||||| |||||||||||| ||| | ||||| ||||| ||||||| Sbjct: 159374 acctcaagcacgaattgatgtacttatttcctttcgaagaagcttcgagtgctg 159321 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 408 gcggagggaggcgaatagggaggcgtagct 437 ||||||||||||||| |||||||||||||| Sbjct: 158695 gcggagggaggcgaagagggaggcgtagct 158666 Score = 44.1 bits (22), Expect = 0.38 Identities = 49/58 (84%) Strand = Plus / Minus Query: 164 actacgggaggtggagcagccgatcaacagccaaatctagtgaatcaacgatcttccg 221 |||| |||||| |||||| | ||| |||||||| |||||||||||||| ||||||| Sbjct: 159861 actaggggaggcggagcaactgattgacagccaagtctagtgaatcaacattcttccg 159804 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 243 taggctttccaagcctcgcatttcctcatttaacct 278 ||||||||||| |||| |||||||||||| ||||| Sbjct: 159643 taggctttccagacctctcatttcctcattcaacct 159608
>gb|AC068664.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-376O11, complete sequence Length = 94429 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 aaggggaaaacttctccgttgcttg 83 ||||||||||||||||| ||||||| Sbjct: 168 aaggggaaaacttctccattgcttg 192
>gb|AC069309.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-154D15, complete sequence Length = 174754 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 aaggggaaaacttctccgttgcttg 83 ||||||||||||||||| ||||||| Sbjct: 173116 aaggggaaaacttctccattgcttg 173140
>gb|AC122485.3| Mus musculus BAC clone RP24-377J10 from chromosome 3, complete sequence Length = 157739 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ttgattgcctcttcaaatgc 129 |||||||||||||||||||| Sbjct: 65609 ttgattgcctcttcaaatgc 65628
>gb|AC164313.3| Mus musculus BAC clone RP23-24F12 from chromosome 3, complete sequence Length = 196368 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aagagttgggagaatttcat 48 |||||||||||||||||||| Sbjct: 65374 aagagttgggagaatttcat 65355
>gb|AC141561.5| Mus musculus BAC clone RP23-457C15 from chromosome 3, complete sequence Length = 169547 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aagagttgggagaatttcat 48 |||||||||||||||||||| Sbjct: 20996 aagagttgggagaatttcat 20977
>gb|AE011631.1| Xanthomonas axonopodis pv. citri str. 306, section 9 of 469 of the complete genome Length = 11483 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ggcggcctacaacttcgccc 357 |||||||||||||||||||| Sbjct: 8441 ggcggcctacaacttcgccc 8460
>gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 7 of 460 of the complete genome Length = 10647 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ggcggcctacaacttcgccc 357 |||||||||||||||||||| Sbjct: 8276 ggcggcctacaacttcgccc 8295
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ggcggcctacaacttcgccc 357 |||||||||||||||||||| Sbjct: 73123 ggcggcctacaacttcgccc 73142
>gb|AC091759.2| Sus scrofa clone RP44-484M10, complete sequence Length = 168703 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 agtgctgactcctggaggcg 341 |||||||||||||||||||| Sbjct: 133087 agtgctgactcctggaggcg 133106
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aagatttacagtacttgatt 115 |||||||||||||||||||| Sbjct: 3212875 aagatttacagtacttgatt 3212856
>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete sequence Length = 217775 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tttcctcatttaacctcagg 282 |||||||||||||||||||| Sbjct: 94093 tttcctcatttaacctcagg 94112 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,279,690 Number of Sequences: 3902068 Number of extensions: 3279690 Number of successful extensions: 59971 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59884 Number of HSP's gapped (non-prelim): 87 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
