Clone Name	rbaal24k14
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	1209	0.0
2	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	771	0.0
3	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	712	0.0
4	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	668	0.0
5	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	668	0.0
6	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	565	e-158
7	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	535	e-149
8	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	486	e-134
9	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	236	7e-59
10	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	236	7e-59
11	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	143	8e-31
12	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	143	8e-31
13	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	143	8e-31
14	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	143	8e-31
15	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	143	8e-31
16	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	143	8e-31
17	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	143	8e-31
18	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	143	8e-31
19	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	137	5e-29
20	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
21	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
22	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	8e-28
23	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
24	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	3e-24
25	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	119	1e-23
26	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	119	1e-23
27	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	3e-18
28	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	98	4e-17
29	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	98	4e-17
30	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	2e-16
31	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	2e-16
32	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	2e-16
33	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	96	2e-16
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
35	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
36	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
37	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	70	1e-08
38	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	70	1e-08
39	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	70	1e-08
40	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	70	1e-08
41	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	70	1e-08
42	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	70	1e-08
43	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	70	1e-08
44	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	70	1e-08
45	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	70	1e-08
46	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	70	1e-08
47	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	70	1e-08
48	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	70	1e-08
49	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	68	4e-08
50	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	68	4e-08
51	emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphat...	64	6e-07
52	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	60	1e-05
53	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	60	1e-05
54	gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence	60	1e-05
55	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	60	1e-05
56	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	1e-04
57	gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 gen...	52	0.002
58	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	52	0.002
59	gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/...	50	0.009
60	emb|Y10657.1|CLRCAGENE C.littorale rca gene	50	0.009
61	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	50	0.009
62	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	48	0.036
63	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	48	0.036
64	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	48	0.036
65	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	48	0.036
66	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	44	0.57
67	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.57
68	emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase	44	0.57
69	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.57
70	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	2.2
71	emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom...	42	2.2
72	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	2.2
73	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
74	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.2
75	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	2.2
76	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	2.2
77	gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complet...	40	8.9
78	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	8.9
79	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	8.9
80	ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (...	40	8.9
81	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	8.9
82	emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding prot...	40	8.9
83	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	8.9
84	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	8.9
85	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	8.9
86	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	8.9
87	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	40	8.9
88	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	8.9
89	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	8.9
90	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	8.9
91	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	8.9
92	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	8.9
93	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	8.9
94	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	8.9
95	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	8.9
96	gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome	40	8.9
97	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	8.9
98	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	8.9
99	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	40	8.9
100	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	8.9

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score = 1209 bits (610), Expect = 0.0
 Identities = 619/622 (99%)
 Strand = Plus / Minus

                                                                        
Query: 28   aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 87
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 88   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 148  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213

                                                                        
Query: 208  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 1153

                                                                        
Query: 268  agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 1093

                                                                        
Query: 328  aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 1033

                                                                        
Query: 388  cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 973

                                                                        
Query: 448  cctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgta 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  cctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgta 913

                                                                        
Query: 508  cacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgat 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  cacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgat 853

                                                                        
Query: 568  cttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgat 627
            ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 852  ctttacgacagactcgtcacagacattgtcggtctggaagatacccttgcagacaccgat 793

                                  
Query: 628  acggtcgtcacgggtgggagcc 649
            ||||||||||||||||||||||
Sbjct: 792  acggtcgtcacgggtgggagcc 771

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  771 bits (389), Expect = 0.0
 Identities = 395/397 (99%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1363

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1303

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1302 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 1243

                                                                        
Query: 433  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 1183

                                                                        
Query: 493  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 1123

                                                                        
Query: 553  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 612
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1122 gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 1063

                                                 
Query: 613  cttgcagacaccgatacggtcgtcacgggtgggagcc 649
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1062 cttgcagacaccgatacggtcgtcacgggtgggagcc 1026



 Score =  389 bits (196), Expect = e-105
 Identities = 227/232 (97%), Gaps = 4/232 (1%)
 Strand = Plus / Minus

                                                                        
Query: 28   aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 86
            ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                                                                        
Query: 87   gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 145
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583

                                                                        
Query: 146  gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 204
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523

                                                                
Query: 205  gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacc 255
            |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacc 1471

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  712 bits (359), Expect = 0.0
 Identities = 479/519 (92%)
 Strand = Plus / Minus

                                                                        
Query: 127  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 186
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 187  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 246
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                                                                        
Query: 247  tcctttaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgc 306
            |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgc 1310

                                                                        
Query: 307  ctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgag 366
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1309 ctggctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaag 1250

                                                                        
Query: 367  catgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacggg 426
            |||||| |||||||| |||| |||||| || |||||||| |||||||||||||| |||||
Sbjct: 1249 catgtggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacggg 1190

                                                                        
Query: 427  cccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgaccca 486
             ||||||||||||||||||||||||||||| |||||||| |||||||| ||    |||||
Sbjct: 1189 tccgtcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacaccca 1130

                                                                        
Query: 487  cttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattg 546
            |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 1129 cttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactg 1070

                                                                        
Query: 547  tcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaa 606
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1069 tcctgggaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaa 1010

                                                   
Query: 607  gatacccttgcagacaccgatacggtcgtcacgggtggg 645
            ||||||||||||||| ||||||||||| || ||||||||
Sbjct: 1009 gatacccttgcagacgccgatacggtcctcgcgggtggg 971

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  668 bits (337), Expect = 0.0
 Identities = 382/397 (96%)
 Strand = Plus / Minus

                                                                       
Query: 253 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 433

                                                                       
Query: 313 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 373

                                                                       
Query: 373 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
           ||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct: 372 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 313

                                                                       
Query: 433 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 492
           |||||||||||||||| ||||||||||||||||||| |||||||||   |||||||||||
Sbjct: 312 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 253

                                                                       
Query: 493 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 552
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgg 193

                                                                       
Query: 553 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 612
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 192 gaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacc 133

                                                
Query: 613 cttgcagacaccgatacggtcgtcacgggtgggagcc 649
           |||||||||||||||||||||||| ||||||||||||
Sbjct: 132 cttgcagacaccgatacggtcgtcgcgggtgggagcc 96



 Score =  248 bits (125), Expect = 2e-62
 Identities = 206/230 (89%), Gaps = 11/230 (4%)
 Strand = Plus / Minus

                                                                       
Query: 32  ggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgc 91
           |||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggtatactcaatatcttta----tatattaacaaaacatgcccagcaatcgcttggatgc 709

                                                                       
Query: 92  gatgcgg-acttaggta-----ggtaaaacatcagatattaaaagtggcatgcttaaaag 145
           ||||||| |||||||||     | |||||||||||||||||||  |||||||||||||||
Sbjct: 708 gatgcggtacttaggtacaaaggataaaacatcagatattaaat-tggcatgcttaaaag 650

                                                                       
Query: 146 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
           ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||
Sbjct: 649 gtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagttcttggcagtctgg 590

                                                             
Query: 206 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 255
           |||||||| ||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 589 tcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctttacc 540

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  668 bits (337), Expect = 0.0
 Identities = 382/397 (96%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1283

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1223

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
            ||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct: 1222 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 1163

                                                                        
Query: 433  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 492
            |||||||||||||||| ||||||||||||||||||| |||||||||   |||||||||||
Sbjct: 1162 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 1103

                                                                        
Query: 493  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 552
            |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1102 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgg 1043

                                                                        
Query: 553  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 612
            |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 1042 gaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacc 983

                                                 
Query: 613  cttgcagacaccgatacggtcgtcacgggtgggagcc 649
            |||||||||||||||||||||||| ||||||||||||
Sbjct: 982  cttgcagacaccgatacggtcgtcgcgggtgggagcc 946



 Score =  246 bits (124), Expect = 8e-62
 Identities = 189/208 (90%), Gaps = 7/208 (3%)
 Strand = Plus / Minus

                                                                        
Query: 54   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 107
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 108  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 167
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 168  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 227
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                        
Query: 228  gcaaagtaccttgctgtgctcctttacc 255
            ||||||||||||||||||| ||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  565 bits (285), Expect = e-158
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 7246

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7245 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 7186

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7185 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 7126

                                                                        
Query: 433  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7125 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 7066

                                                         
Query: 493  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 537
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7065 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 7021



 Score =  470 bits (237), Expect = e-129
 Identities = 254/257 (98%), Gaps = 2/257 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgataagt-ggtgtattggtctttgccaa-tgggtatactcaatatatttagagatata 58
            ||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 7781 atgataagtaggtgtattggtctttgccaaatgggtatacacaatatatttagagatata 7722

                                                                        
Query: 59   ttaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatc 118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7721 ttaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatc 7662

                                                                        
Query: 119  agatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgcc 178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7661 agatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgcc 7602

                                                                        
Query: 179  gttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacct 238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7601 gttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacct 7542

                             
Query: 239  tgctgtgctcctttacc 255
            |||||||||||||||||
Sbjct: 7541 tgctgtgctcctttacc 7525



 Score =  224 bits (113), Expect = 3e-55
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                        
Query: 537  caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821

                                                                 
Query: 597  cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6820 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 6768



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 138/168 (82%)
 Strand = Plus / Minus

                                                                        
Query: 478  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 537
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753

                                                                        
Query: 538  aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 597
             ||||| || || ||||||||||| || | | | || || | ||||||   ||| |||||
Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693

                                                            
Query: 598  ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtggg 645
            |||  ||||||| |||||||| || ||||| ||||| || ||||||||
Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtggg 3645



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 329  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 388
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 389  ttctcgactgtcatctttggctgctcgaa 417
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  535 bits (270), Expect = e-149
 Identities = 362/393 (92%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1353 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1294

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1293 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1234

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1233 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1174

                                                                        
Query: 433  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 492
            |||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||||
Sbjct: 1173 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1114

                                                                        
Query: 493  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 552
            ||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1113 cacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1054

                                                                        
Query: 553  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 612
            ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1053 gaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 994

                                             
Query: 613  cttgcagacaccgatacggtcgtcacgggtggg 645
            ||||||||| ||||||||||| || ||||||||
Sbjct: 993  cttgcagacgccgatacggtcctcgcgggtggg 961



 Score =  180 bits (91), Expect = 4e-42
 Identities = 171/195 (87%), Gaps = 7/195 (3%)
 Strand = Plus / Minus

                                                                        
Query: 68   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 121
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 122  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 180
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 181  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 240
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                           
Query: 241  ctgtgctcctttacc 255
             ||||||||||||||
Sbjct: 1413 ttgtgctcctttacc 1399

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  486 bits (245), Expect = e-134
 Identities = 275/285 (96%)
 Strand = Plus / Minus

                                                                       
Query: 253 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 227

                                                                       
Query: 313 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 167

                                                                       
Query: 373 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
           |||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 166 cccgtactctagcagcttctcgactgtcatctttggctgctcaaaggtcactggtccgtc 107

                                                                       
Query: 433 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 492
           |||||||||||| ||| ||||||||||||||||||| |||||||||   |||||||||||
Sbjct: 106 ccgcgagttcacaagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 47

                                                        
Query: 493 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 537
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 46  cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 2

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  236 bits (119), Expect = 7e-59
 Identities = 280/333 (84%), Gaps = 3/333 (0%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                                                        
Query: 196  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 252
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1310 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1251

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1250 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1191

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1190 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1131

                                             
Query: 433  ccgcgagttcaccagcctcttgccaatgttctc 465
            || ||||||||||||||||||||||||||||||
Sbjct: 1130 cctcgagttcaccagcctcttgccaatgttctc 1098



 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                        
Query: 482  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022

                                                                        
Query: 542  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962

                                                            
Query: 602  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
             ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 961  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 914

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  236 bits (119), Expect = 7e-59
 Identities = 280/333 (84%), Gaps = 3/333 (0%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                                                        
Query: 196  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 252
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1345 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1286

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1285 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1226

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1225 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1166

                                             
Query: 433  ccgcgagttcaccagcctcttgccaatgttctc 465
            || ||||||||||||||||||||||||||||||
Sbjct: 1165 cctcgagttcaccagcctcttgccaatgttctc 1133



 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                        
Query: 482  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057

                                                                        
Query: 542  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997

                                                            
Query: 602  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
             ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 996  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 949

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                        
Query: 482  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027

                                                                        
Query: 542  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967

                                                            
Query: 602  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
             ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 966  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 919



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1315 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1256

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1255 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1196

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1195 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1136

                                             
Query: 433  ccgcgagttcaccagcctcttgccaatgttctc 465
            || ||||||||||||||||||||||||||||||
Sbjct: 1135 cctcgagttcaccagcctcttgccaatgttctc 1103

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                       
Query: 482 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276

                                                                       
Query: 542 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
           ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216

                                                           
Query: 602 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
            ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 215 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 168



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                       
Query: 253 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
           |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 564 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 505

                                                                       
Query: 313 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
           || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 504 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 445

                                                                       
Query: 373 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 444 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 385

                                            
Query: 433 ccgcgagttcaccagcctcttgccaatgttctc 465
           || ||||||||||||||||||||||||||||||
Sbjct: 384 cctcgagttcaccagcctcttgccaatgttctc 352

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                        
Query: 482  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070

                                                                        
Query: 542  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010

                                                            
Query: 602  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
             ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 1009 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 962



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1358 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1299

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1298 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1239

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1238 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1179

                                             
Query: 433  ccgcgagttcaccagcctcttgccaatgttctc 465
            || ||||||||||||||||||||||||||||||
Sbjct: 1178 cctcgagttcaccagcctcttgccaatgttctc 1146



 Score =  117 bits (59), Expect = 5e-23
 Identities = 87/95 (91%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                        
Query: 482  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021

                                                                        
Query: 542  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961

                                                            
Query: 602  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
             ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 960  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 913



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1309 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1250

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1249 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1190

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1189 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1130

                                             
Query: 433  ccgcgagttcaccagcctcttgccaatgttctc 465
            || ||||||||||||||||||||||||||||||
Sbjct: 1129 cctcgagttcaccagcctcttgccaatgttctc 1097

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                        
Query: 482  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059

                                                                        
Query: 542  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999

                                                            
Query: 602  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
             ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 998  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 951



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1347 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1288

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1287 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1228

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1227 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1168

                                             
Query: 433  ccgcgagttcaccagcctcttgccaatgttctc 465
            || ||||||||||||||||||||||||||||||
Sbjct: 1167 cctcgagttcaccagcctcttgccaatgttctc 1135

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                        
Query: 482  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058

                                                                        
Query: 542  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998

                                                            
Query: 602  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
             ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 997  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 950



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1346 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1287

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1286 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1227

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1226 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1167

                                             
Query: 433  ccgcgagttcaccagcctcttgccaatgttctc 465
            || ||||||||||||||||||||||||||||||
Sbjct: 1166 cctcgagttcaccagcctcttgccaatgttctc 1134

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                       
Query: 482 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842

                                                                       
Query: 542 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
           ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782

                                                           
Query: 602 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
            ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 781 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 734



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1130 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1071

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1070 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1011

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1010 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 951

                                             
Query: 433  ccgcgagttcaccagcctcttgccaatgttctc 465
            || ||||||||||||||||||||||||||||||
Sbjct: 950  cctcgagttcaccagcctcttgccaatgttctc 918

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  143 bits (72), Expect = 8e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                        
Query: 482  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063

                                                                        
Query: 542  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 601
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003

                                                            
Query: 602  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
             ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 1002 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 955



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 136  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 196  ggcattttggtcggtgcaaccttccggcacgggca 230
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 253  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1351 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1292

                                                                        
Query: 313  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1291 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1232

                                                                        
Query: 373  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1231 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1172

                                             
Query: 433  ccgcgagttcaccagcctcttgccaatgttctc 465
            || ||||||||||||||||||||||||||||||
Sbjct: 1171 cctcgagttcaccagcctcttgccaatgttctc 1139

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  137 bits (69), Expect = 5e-29
 Identities = 255/317 (80%)
 Strand = Plus / Minus

                                                                        
Query: 329  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 388
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                                                        
Query: 389  ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 448
            |||||||  |||||||| ||||| ||||| |||   ||||| ||||  ||||| || |||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123

                                                                        
Query: 449  ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 508
            | ||||   ||||||||||  ||| |   ||||||||||||||||||||| |||||||||
Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063

                                                                        
Query: 509  acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 568
            ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | |
Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003

                                                                        
Query: 569  ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 628
             | || || | ||||||   ||| ||||||||  ||||||| |||||||| || ||||| 
Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgatg 943

                             
Query: 629  cggtcgtcacgggtggg 645
            ||||| || ||||||||
Sbjct: 942  cggtcctcccgggtggg 926

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 136    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 196    ggcattttggtcggtgcaaccttccggcacgggca 230
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                          
Query: 253    accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
              |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 108310 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 108369

                                                                          
Query: 313    catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
              || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 108370 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 108429

                                                                          
Query: 373    cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
               |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 108430 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 108489

                                               
Query: 433    ccgcgagttcaccagcctcttgccaatgttctc 465
              || ||||||||||||||||||||||||||||||
Sbjct: 108490 cctcgagttcaccagcctcttgccaatgttctc 108522



 Score =  101 bits (51), Expect = 3e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                          
Query: 539    atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 598
              |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747

                                                                 
Query: 599    gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
              ||  ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 108748 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 108798



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 154    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 213
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 214    accttccggcacggg 228
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 482    acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 531
              ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 437    gagttcaccagcctcttgccaatgttctc 465
              ||||||||||||||| |||| ||||||||
Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 136   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 196   ggcattttggtcggtgcaaccttccggcacgggca 230
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                         
Query: 253   accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
             |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 30187 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 30246

                                                                         
Query: 313   catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
             || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 30247 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 30306

                                                                         
Query: 373   cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 30307 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 30366

                                              
Query: 433   ccgcgagttcaccagcctcttgccaatgttctc 465
             || ||||||||||||||||||||||||||||||
Sbjct: 30367 cctcgagttcaccagcctcttgccaatgttctc 30399



 Score =  101 bits (51), Expect = 3e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                         
Query: 539   atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 598
             |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624

                                                                
Query: 599   gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
             ||  ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 30625 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 30675



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 154   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 213
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 214   accttccggcacggg 228
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 482   acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 531
             ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 437   gagttcaccagcctcttgccaatgttctc 465
             ||||||||||||||| |||| ||||||||
Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 136      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 196      ggcattttggtcggtgcaaccttccggcacgggca 230
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                            
Query: 253      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28303449 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28303508

                                                                            
Query: 313      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28303509 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28303568

                                                                            
Query: 373      cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
                 |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 28303569 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28303628

                                                 
Query: 433      ccgcgagttcaccagcctcttgccaatgttctc 465
                || ||||||||||||||||||||||||||||||
Sbjct: 28303629 cctcgagttcaccagcctcttgccaatgttctc 28303661



 Score =  101 bits (51), Expect = 3e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                            
Query: 539      atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 598
                |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886

                                                                   
Query: 599      gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
                ||  ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 28303887 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 28303937



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 154      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 213
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 214      accttccggcacggg 228
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 482      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 531
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 437      gagttcaccagcctcttgccaatgttctc 465
                ||||||||||||||| |||| ||||||||
Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 136      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 196      ggcattttggtcggtgcaaccttccggcacgggca 230
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                            
Query: 253      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 312
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28285898 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28285957

                                                                            
Query: 313      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 372
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28285958 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28286017

                                                                            
Query: 373      cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 432
                 |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 28286018 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28286077

                                                 
Query: 433      ccgcgagttcaccagcctcttgccaatgttctc 465
                || ||||||||||||||||||||||||||||||
Sbjct: 28286078 cctcgagttcaccagcctcttgccaatgttctc 28286110



 Score =  101 bits (51), Expect = 3e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                            
Query: 539      atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 598
                |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335

                                                                   
Query: 599      gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 649
                ||  ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 28286336 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcc 28286386



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 154      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 213
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 214      accttccggcacggg 228
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 482      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 531
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 437      gagttcaccagcctcttgccaatgttctc 465
                ||||||||||||||| |||| ||||||||
Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 142 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 201
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 202 ttggtcggtgcaaccttccggcacgggca 230
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 257  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 316
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1000 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 941

                                                                        
Query: 317  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 376
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 940  tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 881

                                                                        
Query: 377  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 436
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 880  tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 821

                                
Query: 437  gagttcaccagcctcttgcc 456
            ||||||||||||||||||||
Sbjct: 820  gagttcaccagcctcttgcc 801



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 484 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 543
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714

                                             
Query: 544 ttgtcctgggaaggtgtcgacgatcttgacgaca 577
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgaca 680



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 146  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 206  tcggtgcaaccttc 219
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 257  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 316
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 317  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 376
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                                        
Query: 377  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 436
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015

                                
Query: 437  gagttcaccagcctcttgcc 456
            ||||||||||||||||||||
Sbjct: 1014 gagttcaccagcctcttgcc 995



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 484 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 543
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908

                                             
Query: 544 ttgtcctgggaaggtgtcgacgatcttgacgaca 577
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgaca 874



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 146  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 206  tcggtgcaaccttc 219
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 136 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 196 ggcattttggtcggtgcaaccttccggcacgggca 230
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 257  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 316
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1301 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1242

                                                                        
Query: 317  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 376
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1241 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1182

                                                                        
Query: 377  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 436
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1181 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1122

                             
Query: 437  gagttcaccagcctctt 453
            |||||||||||||||||
Sbjct: 1121 gagttcaccagcctctt 1105



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                        
Query: 484  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 543
            |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015

                                              
Query: 544  ttgtcctgggaaggtgtcgacgatcttgacgaca 577
            ||| || |||||||||||||||| ||||| ||||
Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgaca 981



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 146  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 206  tcggtgcaaccttc 219
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 257  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 316
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105

                                                                        
Query: 317  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 376
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045

                                                                        
Query: 377  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 436
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985

                             
Query: 437  gagttcaccagcctctt 453
            |||||||||||||||||
Sbjct: 984  gagttcaccagcctctt 968



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 484 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 543
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878

                                             
Query: 544 ttgtcctgggaaggtgtcgacgatcttgacgaca 577
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgaca 844



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 146  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 205
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 206  tcggtgcaaccttc 219
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 258 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 317
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 318 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 377
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 378 actctagcagcttctcgactgtcatctttggctgctcgaa 417
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 122/152 (80%)
 Strand = Plus / Minus

                                                                       
Query: 494 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 553
           ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || |||
Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624

                                                                       
Query: 554 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 613
           ||||||||||| | || ||||||   ||| ||   |||   ||||||  ||||||| |||
Sbjct: 623 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 564

                                           
Query: 614 ttgcagacaccgatacggtcgtcacgggtggg 645
           |||||||| ||||| ||||| || ||||||||
Sbjct: 563 ttgcagacgccgatgcggtcctcgcgggtggg 532

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 258  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 317
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 318  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 377
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 378  actctagcagcttctcgactgtcatctttggctgctcgaa 417
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Minus

                                                                        
Query: 494  acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 553
            ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || |||
Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019

                                                                        
Query: 554  aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 613
            ||||||||||| | || ||||||   ||| ||   |||   ||||||  ||||||| |||
Sbjct: 1018 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 959

                                            
Query: 614  ttgcagacaccgatacggtcgtcacgggtggg 645
            |||||||| ||||| ||||| || ||||||||
Sbjct: 958  ttgcagacgccgatgcggtcctcgcgggtggg 927

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 258  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 317
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 318  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 377
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 378  actctagcagcttctcgactgtcatctttggctgctcgaa 417
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 603 ggaagatacccttgcagacaccgatacggtcgtcacgggtggg 645
           ||||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 969 ggaagatgcccttgcagacgccgatgcggtcctcgcgggtggg 927

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 138/168 (82%)
 Strand = Plus / Minus

                                                                        
Query: 478  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 537
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184

                                                                        
Query: 538  aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 597
             ||||| || || ||||||||||| || | | | || || | ||||||   ||| |||||
Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124

                                                            
Query: 598  ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtggg 645
            |||  ||||||| |||||||| || ||||| ||||| || ||||||||
Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtggg 1076



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 329  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 388
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 389  ttctcgactgtcatctttggctgctcgaa 417
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 275 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 334
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 335 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 390
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 136     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 196     ggcattttggtcggtgcaaccttccggcacgggca 230
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 136   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 195
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 196   ggcattttggtcggtgcaaccttccggcacgggca 230
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggt 1096

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggt 1096

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggt 1125

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
            (At2g39730) mRNA, complete cds
          Length = 1697

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggt 1007

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                  
Query: 604 gaagatacccttgcagacaccgatacggtcgtcacgggt 642
           |||||||||||||||||||||||||||||| ||||||||
Sbjct: 960 gaagatacccttgcagacaccgatacggtcttcacgggt 922

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                    
Query: 604   gaagatacccttgcagacaccgatacggtcgtcacgggt 642
             |||||||||||||||||||||||||||||| ||||||||
Sbjct: 14154 gaagatacccttgcagacaccgatacggtcttcacgggt 14192

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggt 1010

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1037 gaagatacccttgcagacaccgatacggtcttcacgggt 999

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggt 1007

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds
          Length = 1674

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggt 1010

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggt 1125

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 604  gaagatacccttgcagacaccgatacggtcgtcacgggt 642
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 3129 gaagatacccttgcagacaccgatacggtcttcacgggt 3091

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 103/126 (81%)
 Strand = Plus / Minus

                                                                        
Query: 524  gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 583
            |||||||| || ||||| ||||| || |||||||||||||||| |||||| ||    || 
Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105

                                                                        
Query: 584  tcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtg 643
            |||   ||||||||||||  |||||||||  ||   |||||||||||||| |||||||||
Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgatacggtcctcacgggtg 1045

                  
Query: 644  ggagcc 649
            ||||||
Sbjct: 1044 ggagcc 1039

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 520  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 561
            ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072

---

>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase
           (pTA1.1)
          Length = 1011

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 107/132 (81%)
 Strand = Plus / Minus

                                                                       
Query: 493 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 552
           ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| ||
Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403

                                                                       
Query: 553 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 612
           |||||| ||||| ||||| || ||||  || |||   || |||||||||  ||| |||||
Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343

                       
Query: 613 cttgcagacacc 624
           |||||| |||||
Sbjct: 342 cttgcaaacacc 331

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 520  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 573
            |||||||||||| || ||||| |||||||| |||||| | ||||||||||||||
Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 500  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 559
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664

              
Query: 560  tc 561
            ||
Sbjct: 2663 tc 2662

---

>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence
          Length = 619

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 117/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 500 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 559
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559

                                                                       
Query: 560 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 619
           ||||||| || ||||||   ||||||   |||   ||||||  ||||||| |||||||| 
Sbjct: 558 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 499

                                     
Query: 620 acaccgatacggtcgtcacgggtggg 645
           || ||||| |||||||| ||||||||
Sbjct: 498 acgccgatgcggtcgtcgcgggtggg 473

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 500  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 559
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974

              
Query: 560  tc 561
            ||
Sbjct: 973  tc 972

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 286  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 345
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 346  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 405
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 406  tggctgctcgaa 417
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 484  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 543
            |||||| | ||| ||||||||||| |||| ||| | ||  ||||| || || ||||| ||
Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106

                              
Query: 544  ttgtcctgggaaggtgtc 561
            ||| ||||||||||||||
Sbjct: 1105 ttggcctgggaaggtgtc 1088

---

>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence
          Length = 627

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 116/146 (79%)
 Strand = Plus / Minus

                                                                       
Query: 500 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 559
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567

                                                                       
Query: 560 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 619
           ||||||| || ||||||   ||||||   |||   ||||||  ||||||| |||||||| 
Sbjct: 566 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 507

                                     
Query: 620 acaccgatacggtcgtcacgggtggg 645
           || ||||| ||||| || ||||||||
Sbjct: 506 acgccgatgcggtcctcccgggtggg 481

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 483  cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 542
            ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || |
Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102

                                  
Query: 543  attgtcctgggaaggtgtcgac 564
            | ||||||||||||||||||||
Sbjct: 1101 actgtcctgggaaggtgtcgac 1080

---

>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase
            {alternatively spliced} [spinach, Genomic, 3691 nt]
          Length = 3691

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 617  cagacaccgatacggtcgtcacgggtgggagcc 649
            |||||||| |||||||| |||||||||||||||
Sbjct: 2813 cagacaccaatacggtcctcacgggtgggagcc 2781

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 601  ctggaagatacccttgcagacaccgatacggtcgtcacgggtggg 645
            ||||||||| ||| ||||||| ||||| ||||| |||||||||||
Sbjct: 1861 ctggaagattcccatgcagacgccgatgcggtcctcacgggtggg 1817



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 329  agctgcacacgcttgacattgtcctgctc 357
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 617  cagacaccgatacggtcgtcacgggtgggagcc 649
            |||||||| |||||||| |||||||||||||||
Sbjct: 1185 cagacaccaatacggtcctcacgggtgggagcc 1153



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 497  tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 556
            ||||||||||| || ||||| | ||  || ||||||||||| || |||||||| ||||||
Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246

                      
Query: 557  gtgtcgacga 566
            | ||| ||||
Sbjct: 1245 gcgtcaacga 1236

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 503 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 562
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885

               
Query: 563 acga 566
           ||||
Sbjct: 884 acga 881

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 590  acattgtcggtctggaagatacccttgcagacaccgatacggtc 633
            |||||||| |||  ||| ||||||||||||||||| ||||||||
Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaatacggtc 1000



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 278  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 327
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                       
Query: 482 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 541
           |||||||| | ||| ||||| |||||||| | ||| | ||  |||||||| || || |||
Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530

                                           
Query: 542 gattgtcctgggaaggtgtcgacgatcttgac 573
           ||||| || ||||||||||| || ||||||||
Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 503 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 562
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886

               
Query: 563 acga 566
           ||||
Sbjct: 885 acga 882



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 595 gtcggtctggaagatacccttgcagacaccgatacggtcgtc 636
           |||||||  ||| ||||| ||||| |||||||||||||||||
Sbjct: 853 gtcggtcctgaaaatacctttgcaaacaccgatacggtcgtc 812

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 524 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 573
           |||||||||||||| || |||||||| |||||| | || || ||||||||
Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 291   catcacccagagctgcctggct 312
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase
          Length = 1652

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 617  cagacaccgatacggtcgtcacgggt 642
            ||||||||||||||||| ||||||||
Sbjct: 1016 cagacaccgatacggtcttcacgggt 991

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 41    aatatatttagagatatattaa 62
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    tatatttagagatatattaac 63
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 551  gggaaggtgtcgacgatcttg 571
            |||||||||||||||||||||
Sbjct: 3653 gggaaggtgtcgacgatcttg 3673

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    tatatttagagatatattaac 63
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 112     aaacatcagatattaaaagtg 132
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 112     aaacatcagatattaaaagtg 132
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 112    aaacatcagatattaaaagtg 132
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 43   tatatttagagatatattaac 63
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence
          Length = 98713

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 601   ctggaagatacccttgcagacacc 624
             ||||| ||||||||||||||||||
Sbjct: 67288 ctggatgatacccttgcagacacc 67265

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 291  catcacccagagctgcctggctca 314
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 287  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 346
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 347  ttgtcctgctcctggacgagcatg 370
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (hsp70) partial mRNA
          Length = 3732

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   ggtctttgccaatgggtata 37
            ||||||||||||||||||||
Sbjct: 2247 ggtctttgccaatgggtata 2266

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gtcagcaagctgcacacgct 341
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B
          Length = 1010

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 569 ttgacgacagactcgtcact 588
           ||||||||||||||||||||
Sbjct: 289 ttgacgacagactcgtcact 308

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tcagatattaaaagtggcat 136
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tcagatattaaaagtggcat 136
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   tcagatattaaaagtggcat 136
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 291  catcacccagagctgcctggctca 314
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aatatatttagagatatatt 60
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    ttgacattgtcctgctcctg 360
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 291  catcacccagagctgcctggctca 314
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 145  ggtgtaaaggcagctgccgtcgtcgctc 172
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    aaacatgcccagcaatcgcttgga 88
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 291  catcacccagagctgcctggctca 314
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 291  catcacccagagctgcctggctca 314
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 291  catcacccagagctgcctggctca 314
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   tggcatgcttaaaaggtgta 150
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 620     acaccgatacggtcgtcacg 639
               ||||||||||||||||||||
Sbjct: 3056308 acaccgatacggtcgtcacg 3056327

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    ttgacattgtcctgctcctg 360
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 291  catcacccagagctgcctggctca 314
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    aatatatttagagatatatt 60
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    atcagatattaaaagtggcatgct 139
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,235,517
Number of Sequences: 3902068
Number of extensions: 4235517
Number of successful extensions: 77925
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 77484
Number of HSP's gapped (non-prelim): 380
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---